View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12430_high_10 (Length: 317)
Name: NF12430_high_10
Description: NF12430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12430_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 131 - 301
Target Start/End: Complemental strand, 6583181 - 6583011
Alignment:
| Q |
131 |
tcggattcattcacgatggagtggacgacattacagcatcttgatcttcgtcacgtaggtcacggtgttgttccgtttcaacctcatgctgcttgcttcc |
230 |
Q |
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| T |
6583181 |
tcggattcattcacgatggagtggacaacattacagcatcttgatcttcgtcacgtaggtcacggtgttgttccgtttcaacctcatgctgcttgcttcc |
6583082 |
T |
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| Q |
231 |
attctcatcaggctctcattgccgtcgccgtcggaacttacatcgtcggtaagttttgtttagttcctgca |
301 |
Q |
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| T |
6583081 |
attctcatcaggctctcattgccgtcgccatcggaacttacatcgtcggtaagttttgtttagttcctgca |
6583011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 6583299 - 6583198
Alignment:
| Q |
1 |
acagttataacgcttttttgtagcatctcaactacgaaacaagatctgaatcatttcgattcgcaaagtaacaaaaatgaagctgttgtatgtggaaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6583299 |
acagttataacgcttttttgtagcatctcaactacgaaacaaaatctgaatcatttcgattcgcaaagtaacaaaaatgaagctgttgtatgtggaaaat |
6583200 |
T |
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| Q |
101 |
tg |
102 |
Q |
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|| |
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| T |
6583199 |
tg |
6583198 |
T |
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