View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12430_high_14 (Length: 301)
Name: NF12430_high_14
Description: NF12430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12430_high_14 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 25 - 301
Target Start/End: Complemental strand, 44731784 - 44731508
Alignment:
| Q |
25 |
gtttgtaatttgacctttcctcacattgattccagcatttatctcaccctgtgcatgacgattcctcagctcagtaacaatcgcaatcggattcaaacca |
124 |
Q |
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| T |
44731784 |
gtttgtaaattgacctttcctcacatcgattccagcatttatctcaccttgtgcatgacgattcctcagctcagtaacaatcgcaatcggattcaaacca |
44731685 |
T |
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| Q |
125 |
gcattctcggccaaagtatacggaacgacttcaagtgcctcagcaaatgcttgaatgcaggaactttccatcccatgcagcacctttgcccaaacaccca |
224 |
Q |
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| T |
44731684 |
gcattctcggccaaagtatacggaatgacttcgagtgcctcagcaaatgcttgaatgcaggaaccttccatcccatgcagcacctttgcccaagcaccca |
44731585 |
T |
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| Q |
225 |
actgcctcgacaactcaatctggggcgctccaccaccagcaatcaaaaacctcttaccaaccaaacacctaacaaca |
301 |
Q |
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| T |
44731584 |
actgcctcgacaactcaatctcgggcgctccaccaccagcaatcaaaaacctcttaccaaccaaacacctaacaaca |
44731508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 50702326 - 50702047
Alignment:
| Q |
22 |
gatgtttgtaatttgacctttcctcacattgattccagcatttatctcaccctgtgcatgacgattcctcagctcagtaacaatcgcaatcggattcaaa |
121 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||| |||||||| | |||||||||||||| |||||||||||||| |||||||| |||||| |
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| T |
50702326 |
gatgtttgtaatttgacctttcctgacattgattccagtattgatctcacctttagcatgacgattccttagctcagtaacaattgcaatcgggttcaaa |
50702227 |
T |
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| Q |
122 |
ccagcattctcggccaaagtatacggaacgacttcaagtgcctcagcaaatgcttgaatgcaggaactttccatcccatgcagcacctttgcccaaacac |
221 |
Q |
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| T |
50702226 |
cccgcattctcagcaagtgtatatggaacaacttcaagtgcctcagcaaatgcacgaatacagtaaccctccatgccatgcaaaaccttagcccaagcac |
50702127 |
T |
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| Q |
222 |
ccaactgcctcgacaactcaatctggggcgctccaccaccagcaatcaaaaacctcttaccaaccaaacacctaacaaca |
301 |
Q |
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|||| |||||||||| ||| |||| || || |||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
50702126 |
ccaattgcctcgacagctctatctccggagcaccaccacctgcaatcaaaaacctcttggcaaccaaacacctaacaaca |
50702047 |
T |
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