View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12430_high_15 (Length: 301)
Name: NF12430_high_15
Description: NF12430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12430_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 149 - 274
Target Start/End: Original strand, 14539252 - 14539377
Alignment:
| Q |
149 |
agaacctgtgaaaagctgttatcttttattagcattttcattaaattaaattttttcacttggaatcagggacatatgcatgttgctttatgtgtgggcc |
248 |
Q |
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| T |
14539252 |
agaacctgtgaaaagctattatcttttattagcattttcattaaattaaattttttcacttggaatcagggacaaatgcatgttgctttatgtgtgggct |
14539351 |
T |
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| Q |
249 |
tgtgcctacacaaaatttttagaaac |
274 |
Q |
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| T |
14539352 |
tgtgcctacacaaaatttttagaaac |
14539377 |
T |
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Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 46 - 141
Target Start/End: Original strand, 27934914 - 27935009
Alignment:
| Q |
46 |
cgggccaaatagccaaggtaaaagcacaacaagatccacatgcttacttgtttggttgtgaattagacaaaaacaaatgtactctaaaaatcagtg |
141 |
Q |
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| T |
27934914 |
cgggccaaatagccaaggtaaaagcacaacaagatccacatgcttacttgtttggttgtgaattagacaaaaacaaatgtactctaaaaatcagtg |
27935009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 274
Target Start/End: Complemental strand, 13029123 - 13029086
Alignment:
| Q |
237 |
tatgtgtgggcctgtgcctacacaaaatttttagaaac |
274 |
Q |
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| T |
13029123 |
tatgtgtgggcttgtgcctacacaaaaattttagaaac |
13029086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 274
Target Start/End: Original strand, 18250689 - 18250751
Alignment:
| Q |
212 |
aatcagggacatatgcatgttgctttatgtgtgggcctgtgcctacacaaaatttttagaaac |
274 |
Q |
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| T |
18250689 |
aatcagggacggatgcatgttgggatatgtgtgggcttgtgactacacaaaatttttagaaac |
18250751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 31339746 - 31339792
Alignment:
| Q |
228 |
atgttgctttatgtgtgggcctgtgcctacacaaaatttttagaaac |
274 |
Q |
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| T |
31339746 |
atgttggttcatgtgtgggcttgtgcctacacaaaatttttagaaac |
31339792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 7729591 - 7729627
Alignment:
| Q |
238 |
atgtgtgggcctgtgcctacacaaaatttttagaaac |
274 |
Q |
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| T |
7729591 |
atgtgtgggcttgtgcctacacaaaaattttagaaac |
7729627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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