View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12430_high_1_N (Length: 561)
Name: NF12430_high_1_N
Description: NF12430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12430_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 2 - 549
Target Start/End: Complemental strand, 12149082 - 12148540
Alignment:
| Q |
2 |
ctacaatggataagtgaggctgtgtattctccaattagtagctgacatatggaatcttgccacattagaatgaaatcttgcctcactataaccattgtca |
101 |
Q |
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| T |
12149082 |
ctacaatggataagtgaggctgtgtattctccaattagtagctgacatatggaatcttgccacattagaatgaaatcttgcctcactataaccattgtca |
12148983 |
T |
|
| Q |
102 |
ttcttagttgtatcaacattcagcaggcttttcagtatccacctggtacctttatcttttacataaactaatgctaagtcgtcaaaatgggggaacgatt |
201 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12148982 |
ttcttagttgtatcaacattcagcaggcttttaagtatccacctggtacctttatcttttacataaactaatgctaagtcatcaaaatgggggaacgatt |
12148883 |
T |
|
| Q |
202 |
tcttatacaagcctcgagcataaacgatattgcacatatccacccgtatttactaccccgatcagtgatgtcaatcacatatcgcgtaaaataacaattt |
301 |
Q |
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| T |
12148882 |
tcttatacaagcctcgagcataaacgatattgcacatatccacccgtatttactaccccgatcagtgatgtcaatcacatatcgcgtaaaataacaattt |
12148783 |
T |
|
| Q |
302 |
gttcaaattcttctatgttacggtgctatagtgctgctataatcactacttgacaacacattgtaccaaatagcataccgcggaactataaccatttgtt |
401 |
Q |
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| T |
12148782 |
gttcaaattcttctatgttacggtgctatagtgctgctataatcactacttgacaacacattgtaccaaatagcataccgcggaactataaccatttgtt |
12148683 |
T |
|
| Q |
402 |
caaattcactatagctgctatttgacaacactgtctctgatcctccacagttaacccacttgtcagttccaaaatgggaacttttgtcttcggaggatta |
501 |
Q |
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| T |
12148682 |
caaattcactatagctgctatttgacaacactggctctgat-----taagttaacccacttgtcagttccaaaatgggaacttttgtcttcggaggatta |
12148588 |
T |
|
| Q |
502 |
acaaatatagcggccttttttatcaagctgatgttaggtcatgatatt |
549 |
Q |
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| T |
12148587 |
acaaatatagcggccttttttatcaagctgatgttgggtcatgatatt |
12148540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 360
Target Start/End: Complemental strand, 38434252 - 38434156
Alignment:
| Q |
264 |
cagtgatgtcaatcacatatcgcgtaaaataacaatttgttcaaattcttctatgttacggtgctatagtgctgctataatcactacttgacaacac |
360 |
Q |
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| T |
38434252 |
cagtgttgtcaatcgcagaacacggaaaatagcagtttgttcaaattctgctatgttacagtgctatagcaatgctataatcgctatttaacaacac |
38434156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 408
Target Start/End: Original strand, 6025948 - 6026032
Alignment:
| Q |
324 |
gtgctatagtgctgctataatcactacttgacaacacattgtaccaaatagcataccgcggaactataaccatttgttcaaattc |
408 |
Q |
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| T |
6025948 |
gtgctatagcgctgctatagccactatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaattc |
6026032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 408
Target Start/End: Complemental strand, 24808457 - 24808348
Alignment:
| Q |
299 |
tttgttcaaattcttctatgttacggtgctatagtgctgctataatcactacttgacaacacattgtaccaaatagcataccgcggaactataaccattt |
398 |
Q |
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|
|||||||||||||| ||||| ||| ||||| ||| ||||||| | || || |||||||||| ||| || ||||| |||| ||||||| ||| |||| |
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| T |
24808457 |
tttgttcaaattctgctatgctacagtgctttagcactgctatgaccattatttgacaacactttgaactaaataccatatcgcggaataatagtaattt |
24808358 |
T |
|
| Q |
399 |
gttcaaattc |
408 |
Q |
| |
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|||||||||| |
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|
| T |
24808357 |
gttcaaattc |
24808348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 15956934 - 15956878
Alignment:
| Q |
351 |
ttgacaacacattgtaccaaatagcataccgcggaactataaccatttgttcaaatt |
407 |
Q |
| |
|
|||||||||| |||||| ||||||| || ||||||| ||||| ||||||||||||| |
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|
| T |
15956934 |
ttgacaacactttgtactaaatagcgtatggcggaacaataacaatttgttcaaatt |
15956878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 408
Target Start/End: Complemental strand, 264611 - 264554
Alignment:
| Q |
351 |
ttgacaacacattgtaccaaatagcataccgcggaactataaccatttgttcaaattc |
408 |
Q |
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|||||||||| |||||| ||||||| |||| | |||| ||||| |||||||||||||| |
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| T |
264611 |
ttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaattc |
264554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 3296162 - 3296130
Alignment:
| Q |
289 |
aaaataacaatttgttcaaattcttctatgtta |
321 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
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| T |
3296162 |
aaaataacaatttgttcaaattctactatgtta |
3296130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 45656865 - 45656901
Alignment:
| Q |
299 |
tttgttcaaattcttctatgttacggtgctatagtgc |
335 |
Q |
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|||||||||||||| ||||| |||||||||||||||| |
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| T |
45656865 |
tttgttcaaattctgctatgctacggtgctatagtgc |
45656901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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