View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12430_high_2 (Length: 469)
Name: NF12430_high_2
Description: NF12430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12430_high_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 14 - 469
Target Start/End: Complemental strand, 41067154 - 41066698
Alignment:
| Q |
14 |
gaatgtataccctattactattggggtgagtggggttatataaccttcaaaaagcaagggagtattgttacccaatgaagaaacagacttattccatcaa |
113 |
Q |
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| T |
41067154 |
gaatgtataccctattactattggggtgagtggggttatataaccttcaaaaagcaagggagtattgttacccaatgaagaaacagacttattccatcaa |
41067055 |
T |
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| Q |
114 |
tttacatcagagagatgcagaatacttatgtgtaattggttttaccgtacctttacaatattagtattatttcacaacaaagaatatacctttatttata |
213 |
Q |
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| T |
41067054 |
tttacatcagagagatgcagaatacttatgtgtaattggttttaccgtacctttacaatattagtattatttcacaacaaagaatatacctttatttata |
41066955 |
T |
|
| Q |
214 |
tatacaacccaactaactacatcggtggacattgatgagtgatgacttataaggagagacaccgaagcctaactaaagaagaagaaaaatgcagctcaat |
313 |
Q |
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| T |
41066954 |
tatataacccaactaactacatcggtggacattgatgagtgatgacttataaggagagacaccgaagcctaactaaagaagaagaaaaatgcagctcaat |
41066855 |
T |
|
| Q |
314 |
ttcaacccttaacacctagcatcac-tactccctcattaattgtcccaactttctgttttacaacatcctttctttcttttatataaatcacttttcctc |
412 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066854 |
ttcaactcttaacacctagcatcacttactccctcattaattgtcccaactttctgttttacaacatcctttctttcttttatataaatcacttttcctc |
41066755 |
T |
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| Q |
413 |
actcttcttgctcagaaacaaacaactctcttaaatctcttcaccctctatcacagc |
469 |
Q |
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| T |
41066754 |
actcttcttgctcagaaacaaacaactctcttaaatctcttcaccctctatcacagc |
41066698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 96 - 370
Target Start/End: Complemental strand, 43220411 - 43220147
Alignment:
| Q |
96 |
acagacttattccatcaatttacatcagagagatgcagaatacttatgtgtaattggttttaccgtacctttacaatattagtattatttcacaacaaag |
195 |
Q |
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| T |
43220411 |
acagacttactccatcaatttaagtcagaga--tgtataatactaatatgt--ttggttttatattaccttcacaatattagtatc---tcacaacaa-g |
43220320 |
T |
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| Q |
196 |
aatatacctttatttatatatacaacccaactaactacatcggtggacattgatgagtgatgacttataaggagagacaccgaagcctaactaaaga-ag |
294 |
Q |
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| T |
43220319 |
aatatacctttatt---atatacatcc-aactaactacatcagtggacattgatgagtgatgacttataaggagagacaccgaagcctaaccaaacaggg |
43220224 |
T |
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| Q |
295 |
aagaa-aaatgcagctcaatttcaacccttaacacctagcatcacta-ctccctcattaattgtcccaactttctgtt |
370 |
Q |
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| T |
43220223 |
aagaacaaatgcagctcagtttcaacac-taacacctagcatctctacctctctcattaattgtttcaactttctgtt |
43220147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 96 - 370
Target Start/End: Original strand, 695905 - 696169
Alignment:
| Q |
96 |
acagacttattccatcaatttacatcagagagatgcagaatacttatgtgtaattggttttaccgtacctttacaatattagtattatttcacaacaaag |
195 |
Q |
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| T |
695905 |
acagacttactccatcaatttaagtcagaga--tgtataatactaatatgt--ttggttttatattaccttcacaatattagtatc---tcacaacaa-g |
695996 |
T |
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| Q |
196 |
aatatacctttatttatatatacaacccaactaactacatcggtggacattgatgagtgatgacttataaggagagacaccgaagcctaactaaaga-ag |
294 |
Q |
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| T |
695997 |
aatatacctttatt---atatacatcc-aactaactacatcagtggacattgatgagtgatgacttataaggagagacaccgaagcctaaccaaacaggg |
696092 |
T |
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| Q |
295 |
aagaa-aaatgcagctcaatttcaacccttaacacctagcatcacta-ctccctcattaattgtcccaactttctgtt |
370 |
Q |
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| T |
696093 |
aagaacaaatgcagctcagtttcaacac-taacacctagcatctctacctctctcattaattgtttcaactttctgtt |
696169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 17770946 - 17770877
Alignment:
| Q |
346 |
tcattaattgtcccaactttctgttttacaacatcctttctttcttttatataaatcacttttcctcact |
415 |
Q |
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| T |
17770946 |
tcattatttgtttcaactttctattttaccacatcctttctttcttttatataaatcacttttcctcact |
17770877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 467
Target Start/End: Complemental strand, 17770871 - 17770842
Alignment:
| Q |
438 |
ctctcttaaatctcttcaccctctatcaca |
467 |
Q |
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| T |
17770871 |
ctctcttaaatctcttcaccctctatcaca |
17770842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 96 - 370
Target Start/End: Complemental strand, 39724007 - 39723743
Alignment:
| Q |
96 |
acagacttattccatcaatttacatcagagagatgcagaatacttatgtgtaattggttttaccgtacctttacaatattagtattatttcacaacaaag |
195 |
Q |
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| T |
39724007 |
acagacttactccatcaatttaagtcagaga--tgtataatactaatatgt--ttggttttatattaccttcacaatattagtatc---tcacaacaa-g |
39723916 |
T |
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| Q |
196 |
aatatacctttatttatatatacaacccaactaactacatcggtggacattgatgagtgatgacttataaggagagacaccgaagcctaactaaaga-ag |
294 |
Q |
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| T |
39723915 |
aatatacctttatt---atatacatcc-aactaactacatcagtggacattgatgagtgatgacttataaggagagacaccgaagcctaaccaaacaggg |
39723820 |
T |
|
| Q |
295 |
aagaa-aaatgcagctcaatttcaacccttaacacctagcatcacta-ctccctcattaattgtcccaactttctgtt |
370 |
Q |
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||||| |||||||||||| ||||||| | |||||||||||||| ||| ||| |||||||||||| |||||||||||| |
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| T |
39723819 |
aagaacaaatgcagctcagtttcaacac-taacacctagcatctctacctctctcattaattgtttcaactttctgtt |
39723743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 149 - 282
Target Start/End: Original strand, 5391282 - 5391409
Alignment:
| Q |
149 |
ttggttttaccgtacctttacaatattagtattatttcacaacaaagaatatacctttatttatatatacaacccaactaactacatcggtggacattga |
248 |
Q |
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| T |
5391282 |
ttggttttacagtaccttcacaatattagtatc---tcacaacaaagaatataccttttattatatacag---ccaactaactacatcggcggacaatga |
5391375 |
T |
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| Q |
249 |
tgagtgatgacttataaggagagacaccgaagcc |
282 |
Q |
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| T |
5391376 |
tgagtgataacttataaggagagacaccgaagcc |
5391409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 367
Target Start/End: Original strand, 5391662 - 5391731
Alignment:
| Q |
298 |
aaaaatgcagctcaatttcaacccttaacacctagcatcactac-tccctcattaattgtcccaactttct |
367 |
Q |
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| T |
5391662 |
aaaaatgcagctcagtttcaacac-taacacctagcatctctacttctctcactaattgtctcaactttct |
5391731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 411
Target Start/End: Original strand, 5391726 - 5391756
Alignment:
| Q |
381 |
ctttctttcttttatataaatcacttttcct |
411 |
Q |
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| T |
5391726 |
ctttctttcttttatataaatcacttttcct |
5391756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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