View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12430_high_3 (Length: 369)
Name: NF12430_high_3
Description: NF12430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12430_high_3 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 41890898 - 41890542
Alignment:
| Q |
13 |
tatactataggtttatgcaatgcctgtttttgatttgattgagaggatgatgatgcgaagattgaacttccctcccggtgtagcgcttagacttgtagct |
112 |
Q |
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| T |
41890898 |
tatattataggtttatgcaatgcctgtttttgatttgattgagaggatgatgatgcgaagattgaacttccctcccggtgtagcgcttagacttgtagct |
41890799 |
T |
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| Q |
113 |
cgatctgcttatgtaggtaagatgtcaaaactcgaggcgaaactaattttctgcagtatagatagaagaattattttcttcatgataggtctttgttgaa |
212 |
Q |
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| T |
41890798 |
cgatctgcttatgtaggtaagatgtcaaaactcgaggcgaaactaattttctgcagtatagatagaagaattattttcttcatgataggtctttgttgaa |
41890699 |
T |
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| Q |
213 |
atgtttcagcttttacattattctttggagtcacttttccattctttggtgatcttcttggattctttggtggatttggttttgctcccacttcatattt |
312 |
Q |
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| T |
41890698 |
acgtttcagcttttacattattctttggagtcacttttccattctttggtgatcttcttggattctttggtggatttggttttgctcccacttcatattt |
41890599 |
T |
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| Q |
313 |
tgtaaggctctcttgtcctctctattcttatgtcaaattgtcaatttaagatgaatt |
369 |
Q |
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| T |
41890598 |
tgtaaggctctcttgtcctctctattcttatgtcaaattgtcaatttaaaatgaatt |
41890542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 204 - 334
Target Start/End: Complemental strand, 41896319 - 41896189
Alignment:
| Q |
204 |
tttgttgaaatgtttcagcttttacattattctttggagtcacttttccattctttggtgatcttcttggattctttggtggatttggttttgctcccac |
303 |
Q |
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| T |
41896319 |
tttgttgatatgtttcagcttttacattattatttggggtgagttttcctttctttggagatcttcttgggttctttggtggatttggttttgctcccac |
41896220 |
T |
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| Q |
304 |
ttcatattttgtaaggctctcttgtcctctc |
334 |
Q |
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| T |
41896219 |
gtcatattttgtaaggcactcttgtcctctc |
41896189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 41896559 - 41896418
Alignment:
| Q |
18 |
tataggtttatgcaatgcctgtttttgatttgattgagaggatgatgatgcgaagattgaacttccctcccggtgtagcgcttagacttgtagctcgatc |
117 |
Q |
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| T |
41896559 |
tataggtttatgccatgcctgttttcgacttgattgaggggacgatggttcgacgattgaacttccctcctagtgtagcgcttagacttgtagctcgatc |
41896460 |
T |
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| Q |
118 |
tgcttatgtaggtaagatgtcaaaactcgaggcgaaactaat |
159 |
Q |
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| T |
41896459 |
cgcctatgtaggtaagatggcaaaacttgagtcaaaactaat |
41896418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 22551910 - 22551974
Alignment:
| Q |
254 |
ttctttggtgatcttcttggattctttggtggatttggttttgctcccacttcatattttgtaag |
318 |
Q |
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| T |
22551910 |
ttctttggcgatcttcttggcttctttggtggatttggttttgctcccacttcatattttgtaag |
22551974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 22550823 - 22550866
Alignment:
| Q |
23 |
gtttatgcaatgcctgtttttgatttgattgagaggatgatgat |
66 |
Q |
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| T |
22550823 |
gtttatgctatgcctgtttttgatttgattgagaggatgatgat |
22550866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 43855185 - 43855252
Alignment:
| Q |
251 |
ccattctttggtgatcttcttggattctttggtggatttggttttgctcccacttcatattttgtaag |
318 |
Q |
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| T |
43855185 |
ccattctttggtgctctccttggattttttggaggattggcatttgctcccacaacatattttgtaag |
43855252 |
T |
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