View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12430_high_5 (Length: 350)
Name: NF12430_high_5
Description: NF12430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12430_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 350
Target Start/End: Original strand, 21369192 - 21369528
Alignment:
| Q |
14 |
gagctggagccttaaaaggatttctgagtttggttatctaagagcacatgctactaggaatgatttaaacctagaggttagtatttaaacacttatattc |
113 |
Q |
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| T |
21369192 |
gagctggagccttaaaaggatttccgagtttggttatctaagagcacatgctactaggaatgatttaaacctagaggttagtatttaaacacttatattc |
21369291 |
T |
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| Q |
114 |
caaactcataaaattatcattgcttgttttgtaatttaccatattatatttaagtttgtgattttgtgcacttagaattacttgaaccttcattgcagtt |
213 |
Q |
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| T |
21369292 |
caaactcataaaattatcattccttgttttgtaatttaccatattatatttaagtttgtgattttgtgcacttagaattacttcaaccttcattgcagtt |
21369391 |
T |
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| Q |
214 |
tgtgacctcagaaacaagagaagttaaggatagtttccgcataacaaagtaaaagctcactcgaggaaaaagcgaggaacaaatatagaagtagaaggtc |
313 |
Q |
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| T |
21369392 |
tgtgacatcagatacaagagaagttaaggatagtttccgcataacaaagtaaaagctcactcgaggaaaaagcgaggaacaaatatagaagtagaaggtc |
21369491 |
T |
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| Q |
314 |
taataaagatcgagacagacagacaaatagatagata |
350 |
Q |
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| T |
21369492 |
taataaagatcaagacagacagacaaatagatagata |
21369528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 166 - 323
Target Start/End: Original strand, 15030241 - 15030400
Alignment:
| Q |
166 |
agtttgtgattttgtgcacttagaattacttgaaccttcattgcagtttgtgacctcagaaacaagagaagttaaggatagtttccgcataacaaagtaa |
265 |
Q |
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| T |
15030241 |
agtttgtgattttgtgcactaagaattacttcaaccttcattgcagtttgtgacatcagatacaagagaagttaaggacagttttcgcataacaaagtga |
15030340 |
T |
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| Q |
266 |
aagctcactcgaggaaaaagcgaggaacaaatataga--agtagaaggtctaataaagat |
323 |
Q |
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| T |
15030341 |
aggcttactcaaagaaaaagagagaaagaaatgtagagttgtacaaggtctaataaagat |
15030400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 15030122 - 15030234
Alignment:
| Q |
14 |
gagctggagccttaaaaggatttctgagtttggttatctaagagcacatgctactaggaatgatttaaacctagaggttagtatttaaacacttatattc |
113 |
Q |
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|||||||||| | |||||||||||||||||||||||| |||| |||||||||||||| |||||||||| | ||||||||||||| |||| |||||||||| |
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| T |
15030122 |
gagctggagcttgaaaaggatttctgagtttggttatttaagggcacatgctactagaaatgatttaagcttagaggttagtatctaaatacttatattc |
15030221 |
T |
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| Q |
114 |
caaactcataaaa |
126 |
Q |
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||| ||||||||| |
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| T |
15030222 |
caacctcataaaa |
15030234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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