View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12430_high_6 (Length: 346)
Name: NF12430_high_6
Description: NF12430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12430_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 175 - 301
Target Start/End: Original strand, 13059035 - 13059161
Alignment:
| Q |
175 |
gaactttctgagacctatattataagcatggtcgaataatttcaacaaaatagtccttttcttcatgatttttacatgcatcttttattgtgttatacta |
274 |
Q |
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| T |
13059035 |
gaactttctgagacctatattataagcatggtcgaataatttcaacaaaatagtcctttttttcgtgattttgacatgcatcttttattgtgttatacta |
13059134 |
T |
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| Q |
275 |
ggttttcaggttatatattacctccgt |
301 |
Q |
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| T |
13059135 |
ggttttctggttatatactacctccgt |
13059161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 175 - 265
Target Start/End: Original strand, 13042741 - 13042831
Alignment:
| Q |
175 |
gaactttctgagacctatattataagcatggtcgaataatttcaacaaaatagtccttttcttcatgatttttacatgcatcttttattgt |
265 |
Q |
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| T |
13042741 |
gaactttctgaggcctatattataagcatggtcgaataatttcaacaaaaaagttcttttcttcgtgatttttacatgcaccttttattgt |
13042831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 13042270 - 13042331
Alignment:
| Q |
18 |
actatattatttcagaaataagtagtttatacgccaatgaatactacatactgactttaatg |
79 |
Q |
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| T |
13042270 |
actatattatttcagaaataagtagtttatacgccaatgaatactacatactgactttaatg |
13042331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 13058873 - 13058939
Alignment:
| Q |
16 |
atactatattatttcagaaataagtagtttatacgccaatg---aatactacatactgactttaatg |
79 |
Q |
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| T |
13058873 |
atactatattatttcaaaaataagtagtttatacgccaatgaataatactacatactgactttaatg |
13058939 |
T |
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