View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12430_high_7 (Length: 345)
Name: NF12430_high_7
Description: NF12430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12430_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 5282339 - 5282011
Alignment:
| Q |
1 |
atatttcatttatttaaatgtaaaacatcacttgagacnnnnnnnnnnngtctaaatacgtagaagcaatgatacacatgacgtggcatgggttgtgtgg |
100 |
Q |
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| T |
5282339 |
atatttcatttatttaaatgtaaaacatcacttgagacaaaaaaaa---gtctaaatatgtagaagcaatgatacacatgacgtggcatgggctgtgtga |
5282243 |
T |
|
| Q |
101 |
atgtctgaatgagacatgcattgagaattagtgaccatatagtatatgaatatattgttaaattaattagatcagtttggtaagacagtttaataaggac |
200 |
Q |
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| T |
5282242 |
atgtctgaatgagacatgcattgagaattagtgaccatatagtat--gaatatattgttaaattaattagttcagtttggtaagacagtttaataaggac |
5282145 |
T |
|
| Q |
201 |
gaaaagagctgtcatcatatattgtacttcaatgctttaaaattgcacacaattttttgaagaacttgagggcacggtatatattaatagatggagtttc |
300 |
Q |
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| T |
5282144 |
gaaaagagctgtcatcatatattgtacttcaatgctttaaa-ttgcacacaattttttgaagaacttgagggcacggtatatattaatagatggagtttc |
5282046 |
T |
|
| Q |
301 |
tgtaaagagaataaaatcagatttttattttctct |
335 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
5282045 |
tgtaaagagaataaaatcagatttttattttctct |
5282011 |
T |
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