View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12430_high_8 (Length: 345)
Name: NF12430_high_8
Description: NF12430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12430_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 99; Significance: 8e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 230 - 332
Target Start/End: Complemental strand, 53135076 - 53134974
Alignment:
| Q |
230 |
ccagagttttataagatataaaacttaagtactaaaaataagcatcagagtcatggaagtactatactataagataaacaccgctcgcaaatacacgagc |
329 |
Q |
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| T |
53135076 |
ccagagttttataagatataaaacttaagtactaaaaaaaagcatcagagtcatggaagtactatactataagataaacaccgctcgcaaatacacgagc |
53134977 |
T |
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| Q |
330 |
ttc |
332 |
Q |
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| T |
53134976 |
ttc |
53134974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 53135237 - 53135142
Alignment:
| Q |
63 |
tagcatcagagtcatggaagtattaggataaacatcgctcgcaaatacacgagcttctccttatcacaaaataactctcatcacttgctacttgct |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53135237 |
tagcatcagagtcatggaagtattaggataaacatcgctcgcaaatacacgagcttctccttatcacaaaataactctcatcacttgctacttgct |
53135142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 53135004 - 53134947
Alignment:
| Q |
89 |
gataaacatcgctcgcaaatacacgagcttctccttatcacaaaat-aactctcatca |
145 |
Q |
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| T |
53135004 |
gataaacaccgctcgcaaatacacgagcttcttgtcatcgcaaaataaactctcatca |
53134947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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