View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12430_low_1 (Length: 495)
Name: NF12430_low_1
Description: NF12430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12430_low_1 |
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| [»] scaffold0716 (1 HSPs) |
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| [»] scaffold0421 (2 HSPs) |
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Alignment Details
Target: scaffold0716 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: scaffold0716
Description:
Target: scaffold0716; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 10 - 480
Target Start/End: Complemental strand, 3488 - 3017
Alignment:
| Q |
10 |
tgtgctcttgggtaaatcttcctgcataattgttctacctgcatactattatcccatgaaaattaaacagtacatcactccataaacacgcc-tgacttt |
108 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3488 |
tgtgctcttgggtaaaccttcctgcataattgttctacctgcatactattatctcatgaaaattaaacagtacatcactccataaacacgccctgacttt |
3389 |
T |
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| Q |
109 |
taaataattagaaagatcccaacacacataataagcttctaaactcttacaaccctttctctttgaaaacatccaaggttttatatccactttacataaa |
208 |
Q |
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| T |
3388 |
aaaataattagaaagatcccaacacacataataagcttctaaactcttacaaccctttctctttgaaaacatccaaggttttatatccactttacataaa |
3289 |
T |
|
| Q |
209 |
cattgaattgatggatcatcagtcccataaacattgaattgacccatcaaacccatatgtgattgtaatcaaagaagatctacctataattgaacacaca |
308 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
3288 |
cattgagttgatggatcatcagtcccataaacattgaattgacccatcaaacccatatgtgattgtaatcaaaaaagatctacctataattgaacacata |
3189 |
T |
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| Q |
309 |
aaaacacaaataatcaaaatttgtgcagttttgcttcaacttgaagctgctaccataactgcattttcaccaaacacaagatggaaataaaactcaaata |
408 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3188 |
aaaacacaaataatcaaaatttgtgcagttatccttcaacttgaagctgctaccataactgcattttcaccaaacacaagatgaaaataaaactcaaata |
3089 |
T |
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| Q |
409 |
accatagatgtaaacaatcaattagaccagatattggaagaggtaaaaacaagaaatagaaataactcacct |
480 |
Q |
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| T |
3088 |
accctagatgtaaacaatcaatcaggccagatattggaagaggtaaaaacgagaaatggaaataactcacct |
3017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 184 - 480
Target Start/End: Complemental strand, 45633135 - 45632839
Alignment:
| Q |
184 |
aggttttatatccactttacataaacattgaattgatggatcatcagtcccataaacattgaattgacccatcaaacccatatgtgattgtaatcaaaga |
283 |
Q |
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| T |
45633135 |
aggttttatatccactttacataaacattgagttgatggatcatcagtcccataaacattgaattgacccatcaaacccatatgtgattgtaatcaaaga |
45633036 |
T |
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| Q |
284 |
agatctacctataattgaacacacaaaaacacaaataatcaaaatttgtgcagttttgcttcaacttgaagctgctaccataactgcattttcaccaaac |
383 |
Q |
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| T |
45633035 |
agatctacctataattgaacacacaaaaacacaaataatcaaaatttgtgcagttttgcttcaacttgaagctgctaccataactgcattttcacccaac |
45632936 |
T |
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| Q |
384 |
acaagatggaaataaaactcaaataaccatagatgtaaacaatcaattagaccagatattggaagaggtaaaaacaagaaatagaaataactcacct |
480 |
Q |
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| T |
45632935 |
acaagatggaaataaaactcaaataaccctagatgtaaacaatcaatcagaccagatattggaagaggtaaaaacaagaaatagaaattactcacct |
45632839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 138 - 228
Target Start/End: Complemental strand, 29171771 - 29171681
Alignment:
| Q |
138 |
aataagcttctaaactcttacaaccctttctctttgaaaacatccaaggttttatatccactttacataaacattgaattgatggatcatc |
228 |
Q |
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||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||| | | |||||| |||||| |
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| T |
29171771 |
aataagcttctaaactcttacaaacatttctctttgaaaacacccaaggttttatatccactttacataaacacttatttgatgaatcatc |
29171681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 341
Target Start/End: Complemental strand, 29171639 - 29171563
Alignment:
| Q |
265 |
atgtgattgtaatcaaagaagatctacctataattgaacacacaaaaacacaaataatcaaaatttgtgcagttttg |
341 |
Q |
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| T |
29171639 |
atgtgattgtaattaagcaagatctacctctaattgaacattgataaacacaaataactaaactatgtgcagttttg |
29171563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 36162411 - 36162500
Alignment:
| Q |
140 |
taagcttctaaactcttacaaccctttctctttgaaaacatccaaggttttatatccactttacataaacattgaattgatggatcatca |
229 |
Q |
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| T |
36162411 |
taagcttctaaactcttacaaccctttctcttagaaaacacccaaggttttatatcaactttacataaacactgatttgaagcatcatca |
36162500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 14601 - 14678
Alignment:
| Q |
247 |
ttgacccatcaaacccatatgtgattgtaatcaaagaagatctacctataattgaacacacaaaaacacaaataatca |
324 |
Q |
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| T |
14601 |
ttgacccatcaaacccatatgtgattgtaatcaaacaagatctacctctaattaaacacatgaaaacacaaataatca |
14678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 411
Target Start/End: Original strand, 14691 - 14731
Alignment:
| Q |
372 |
ttttcaccaa-acacaagatggaaataaaactcaaataacc |
411 |
Q |
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| T |
14691 |
ttttcaccaacacacaagatggaaataaaactcaagtaacc |
14731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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