View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12431_high_4 (Length: 430)
Name: NF12431_high_4
Description: NF12431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12431_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 40092685 - 40092282
Alignment:
| Q |
18 |
catcttgctcaaaagaggtgttggaaggtatggaaaacttaaattttcatcaattgttgaacctagttgtcttagtatagttttaatttattcagaagca |
117 |
Q |
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| T |
40092685 |
catcttgctcaaaagaggtgttggaaggtatggaaaacttaatttttcatcaattgttgaacctagttgtcttagtatagttttaatttattcagaagca |
40092586 |
T |
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| Q |
118 |
aatattagtactagtagtagttaccagaatgtagctttttatgatttttaccgtatcattggttatgtcctccatggcttacgtggccagtatagtatat |
217 |
Q |
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| T |
40092585 |
aattttagtactagtagt---taccggaatgtagctttttatgatttttacggtatcattggttatgtcctccatggcttacgtggccagtatagtatat |
40092489 |
T |
|
| Q |
218 |
ggcagtttcaagacggattggtgccaatttaatcggcggcaacgaggtcatttataattgtctttttgttcatgagatcttgtaccgtcattctcttaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40092488 |
ggcagtttcaagacggattggtgccaatttaatcggcggcaacgaggtcatttataattgcctttttgttcatgagatcttgtaccgtcattctcttaaa |
40092389 |
T |
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| Q |
318 |
taagagtgcacatgggcgagtgagatcatagattcaaaatgtacaatttatgaatcttgcctttttgttcattttcacagtagcatacttttgatacaca |
417 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40092388 |
taagagtgtacatgggcgagtgagatcatagattcaaaatgtacaatttatgaatcttgcctttttgttcattttcacagtagcatacttttgatataca |
40092289 |
T |
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| Q |
418 |
ggttctg |
424 |
Q |
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| T |
40092288 |
ggctctg |
40092282 |
T |
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