View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12431_high_6 (Length: 370)
Name: NF12431_high_6
Description: NF12431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12431_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 38706837 - 38707021
Alignment:
| Q |
14 |
agagacaaaaacacccaacttaaagactcc----aaaccttagcccaccctaagagaacccaaataatccacaacaattccctcctatcagtaaggacca |
109 |
Q |
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| T |
38706837 |
agagacaaaaacacccaacttaaagactccgaccaaaccttagcccaccctaagggaacccaaat---ccacaacaattccctcctatcagtaaggacca |
38706933 |
T |
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| Q |
110 |
acagccgctgagaccacaaagagatcaacccctaaaccatgatctatctaccagtattattctaatgaaaacggaactatcaagcttgt |
198 |
Q |
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| T |
38706934 |
acagccgctgagaccacaaagagatcaa-ccctaaaccatgatctatctaccagtattattctaatgaaaatggagctatcaagcttgt |
38707021 |
T |
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Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 260 - 355
Target Start/End: Original strand, 38707123 - 38707218
Alignment:
| Q |
260 |
ctgtttcttttctcttgttggcaaagctgctaagctgttagggtaaattccttttatagagtaacggtttggctaactttgtgctcttttatttat |
355 |
Q |
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| T |
38707123 |
ctgtttcttttctcttgttggcaaagctgctaagctgttagggtaaattccttttatagagtaacggtttggctaactttgtgctcttttatttat |
38707218 |
T |
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