View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12431_high_9 (Length: 280)
Name: NF12431_high_9
Description: NF12431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12431_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 28379756 - 28380029
Alignment:
| Q |
1 |
taaggttcgtccatgtcttatttcctttcttgttgaaattcttttaattatcattacatttatatatggtatggtagtttaatagcattaaattttttaa |
100 |
Q |
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| T |
28379756 |
taaggttcgtccatgtcttatttcctttcttgttgaaattcttttaattatcattacatttatatatggtatggtagtttaatagcattaatttttttaa |
28379855 |
T |
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| Q |
101 |
ttattttcttctattttagccttgaactatgtttctgatgaaatgcagcttcatatttttacttttgcaggttaaga------gaagatgaagatgttga |
194 |
Q |
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| T |
28379856 |
ttattttcttctattttagccttgaactatgtttctgatgaaatgcagcttcaaatttttacttttgtaggttaagagaagatgaagatgaagatgttga |
28379955 |
T |
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| Q |
195 |
gtaagaagaacaataatgttatcttcttttggtggttaggaatgattatgaagttttgtttcttgctctgtgct |
268 |
Q |
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| T |
28379956 |
gtaagaagaacaataatgttatcttcttttggtggttaggaatgattatgaagttttgtttcttgctctgtgct |
28380029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 28389393 - 28389662
Alignment:
| Q |
1 |
taaggttcgtccatgtctt-----atttcctttcttgttgaaattcttttaattatcattacatttatatatggtatggtagtttaatagcattaaattt |
95 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||| ||| |
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| T |
28389393 |
taaggttcgtccatgtctttaaaaatttcttttcttgttgaaattcttttaattatcatcatatttatatatggtatagtagtttaatagcattaatttt |
28389492 |
T |
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| Q |
96 |
tttaattattttcttctattttagccttgaactatgtttctgatgaaatgcagcttcatatttttacttttgcaggttaaga------gaagatgaagat |
189 |
Q |
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| T |
28389493 |
tttaattaatttctacttttttagccttgaaatatgtttcttatgaaatgcagcttcaaatttttacttttgtaggttaagaaatgatgaagatgaaagt |
28389592 |
T |
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| Q |
190 |
gttgagtaagaagaacaataatgttatcttcttttggtggttaggaatgattatgaagttttgtttcttg |
259 |
Q |
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| T |
28389593 |
gttgagtaagaagaacaaacatgttatcttatattggtggtttggaatgattgtgcaattctgtttcttg |
28389662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 28415085 - 28414995
Alignment:
| Q |
178 |
gaagatgaagatgttgagtaagaagaacaataatgttatcttcttttggtggttaggaatgattatgaagttttgtttcttgctctgtgct |
268 |
Q |
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| T |
28415085 |
gaagatgaacgtgttgagtatgaagaacaataatgttatcttcttttggtggtttggaatgattgtgaagttctgtttcttgctatgtgct |
28414995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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