View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12431_low_3 (Length: 449)
Name: NF12431_low_3
Description: NF12431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12431_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 4 - 385
Target Start/End: Complemental strand, 27935295 - 27934914
Alignment:
| Q |
4 |
ggagcaaaatcaccgaaatccctattacctgagttctggctacgccactgattacctgactttaaaagctatacatgatccaaaatttcacacaaaatat |
103 |
Q |
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| T |
27935295 |
ggagcaaaatcaccgaaatccctattacctgagttctggctacgccactgattacctgactttaaaagctatacatgatccaaaatttcacacaaaatat |
27935196 |
T |
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| Q |
104 |
ctgtacaaatcgccgaagtgtaacaacaggactacctttgaagagtagtgattagaaacatcccatttcttaatgttactagtcgcttgccaggtaaggt |
203 |
Q |
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| T |
27935195 |
ctgtacaaatcaccgaagtgtaacaacaggactacctttgaagagtagtgattagaaacatcccattttttaatgttactagtcgcttgccaggtaaggt |
27935096 |
T |
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| Q |
204 |
cacaaggccaggcacagagaaagtgcatagccatatgtctatgagctatcaatgcatgtggtttttaaaacaagattctgtcatgccactgatttttaga |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27935095 |
cacaaggccaggcacagagaaagtgcatagccatatgtctatgagctatcaatgcatgtggtttttaaaacaagattctgtcatgccactgatttttaga |
27934996 |
T |
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| Q |
304 |
gtacatttgtttttgtctaattcacaaccaaacaagtaagcatgtggatcttgttgtgcttttaccttggctatttggcccg |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27934995 |
gtacatttgtttttgtctaattcacaaccaaacaagtaagcatgtggatcttgttgtgcttttaccttggctatttggcccg |
27934914 |
T |
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