View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12431_low_5 (Length: 393)
Name: NF12431_low_5
Description: NF12431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12431_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 40962113 - 40961894
Alignment:
| Q |
7 |
gtttgtggtggcatatggaagcttgttggtagaagggtacccaattgaagatctagttgtgaagctaccgggccaacccaaagttaaattcagtcaatat |
106 |
Q |
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| T |
40962113 |
gtttgtggtggcatatggaagcttgttggtagaagggtacccaattgaagatctagttgtgaagctaccaggccaacccaaagttaaattcagtcaatat |
40962014 |
T |
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| Q |
107 |
gctggttatgttgatatagatataaaacatgggaggagtctcttctattattttgttgaggctgaccatctccctcacaaaaagcctctcaccctatggc |
206 |
Q |
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| T |
40962013 |
gctggttatgttgatatagatataaaacatgggaggagtctcttctattattttgttgaggctgaccatctccctcacaaaaagcctctcaccctatggc |
40961914 |
T |
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| Q |
207 |
tcaatggaggtaataataat |
226 |
Q |
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| T |
40961913 |
tcaatggaggtaataataat |
40961894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 34 - 223
Target Start/End: Original strand, 40971646 - 40971835
Alignment:
| Q |
34 |
ggtagaagggtacccaattgaagatctagttgtgaagctaccgggccaacccaaagttaaattcagtcaatatgctggttatgttgatatagatataaaa |
133 |
Q |
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| T |
40971646 |
ggtagaagggtacccaattgaagatttcattgtgaagttgccaggccaacctaaggttgaattcaaacaatatgctggctatattgatatagatgtaagg |
40971745 |
T |
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| Q |
134 |
catgggaggagtctcttctattattttgttgaggctgaccatctccctcacaaaaagcctctcaccctatggctcaatggaggtaataat |
223 |
Q |
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| T |
40971746 |
catgggagaagcctcttctattattttgttgaggctgatcatgaccctcacaaaaagcctctcaccctttggctcaatggaggtaataat |
40971835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 38 - 227
Target Start/End: Complemental strand, 30907045 - 30906855
Alignment:
| Q |
38 |
gaagggtacccaattgaagatctagttgtgaagctaccgggccaacccaaagttaaattcagtcaatatgctggttatgttgatatagatataaaacatg |
137 |
Q |
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||||||||||| ||||| ||||| ||||| | || || || ||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
30907045 |
gaagggtaccctattgaggatctggttgttagtcttccaggtcaacctaaagttgaattcagtcaatatgctggttatgttgatattgatgtaaaacatg |
30906946 |
T |
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| Q |
138 |
ggaggagtctcttctattattttgttgaggctgaccatctccctcacaaaaagcctctcaccctatggctcaatggaggt-aataataatt |
227 |
Q |
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| T |
30906945 |
gtagaagcttgttttattattttgttgaagctgatcataaacctcaaaataaacccctcactctttggctcaatggaggtaaataataatt |
30906855 |
T |
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