View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12431_low_7 (Length: 334)

Name: NF12431_low_7
Description: NF12431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12431_low_7
NF12431_low_7
[»] chr8 (5 HSPs)
chr8 (5-334)||(22915682-22916013)
chr8 (11-77)||(38388027-38388093)
chr8 (11-89)||(46132-46210)
chr8 (9-89)||(4489629-4489709)
chr8 (220-252)||(7313413-7313445)
[»] chr1 (2 HSPs)
chr1 (10-89)||(4397375-4397454)
chr1 (10-89)||(38710049-38710128)
[»] chr5 (7 HSPs)
chr5 (10-89)||(25362370-25362449)
chr5 (10-89)||(35847195-35847274)
chr5 (10-77)||(17218824-17218891)
chr5 (11-89)||(29685923-29686001)
chr5 (10-76)||(39368972-39369037)
chr5 (9-77)||(2707170-2707238)
chr5 (10-89)||(40377692-40377771)
[»] chr3 (5 HSPs)
chr3 (10-85)||(16285167-16285242)
chr3 (10-75)||(17324062-17324127)
chr3 (10-89)||(23087608-23087687)
chr3 (20-89)||(29016576-29016644)
chr3 (10-89)||(45181691-45181770)
[»] chr6 (1 HSPs)
chr6 (91-190)||(25914425-25914521)
[»] chr4 (3 HSPs)
chr4 (9-89)||(26500179-26500259)
chr4 (9-89)||(10388658-10388738)
chr4 (10-77)||(1799255-1799322)
[»] chr2 (4 HSPs)
chr2 (10-89)||(41958329-41958408)
chr2 (9-67)||(23873955-23874013)
chr2 (10-89)||(37128828-37128907)
chr2 (44-87)||(4397369-4397412)
[»] chr7 (2 HSPs)
chr7 (10-77)||(2570425-2570492)
chr7 (10-77)||(6003483-6003550)


Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 334
Target Start/End: Complemental strand, 22916013 - 22915682
Alignment:
Q  5 cagtaccaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaatttccggtctattagaacacagcagtg 104  Q
    ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  22916013 cagtaccaacactgatcaatttggcatccgatagtgaatttgcttcaaacgttcagcttcgactaccactcaatttccggtctatcagaacacagcagtg 22915914  T
Q  105 atttgaatcttcttatatcagaccgaaagaaaaaattgacaaacaagaactccaccaaaagaagcaatccaacagaaaccgattaataatagaaacaatt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  22915913 atttgaatcttcttatatcagaccgaaagaaaaaattgacaaacaagaactccgccaaaagaagcaatccaacagataccgattaataatagaaacaatt 22915814  T
Q  205 gtaaatctaaaaatgttattattataaggcttaaatatgtatttgatcttgcgcaacttcgcgtcgtttaaaaatttgtccaattaatctctaa-catgg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||  |  ||||||||||||| |||||  ||||| |||| | |||    
T  22915813 gtaaatctaaaaatgttattattataaggcttaaatatgtatttgatcct-tgcaactagggatcgtttaaaaattggtccatgtaatcgctaatcttgg 22915715  T
Q  304 caattttccctt--attgttaaataatttaaaa 334  Q
    |||||| |||||  |||||| ||| ||||||||    
T  22915714 caatttacccttgcattgtttaatcatttaaaa 22915682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 77
Target Start/End: Complemental strand, 38388093 - 38388027
Alignment:
Q  11 caacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaa 77  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  38388093 caacagtgatcaattaggcacccgatagtgattttgcttcaaacgttcagcttcgaccaccactcaa 38388027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 46132 - 46210
Alignment:
Q  11 caacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaatttccggtctat 89  Q
    ||||| ||||||||| | | || |||||||| ||||||||||||||||| ||| |||||| |||||| |||| ||||||    
T  46132 caacaatgatcaattcgacgcctgatagtgattttgcttcaaacgttcaactttgaccaccactcaagttccagtctat 46210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 4489629 - 4489709
Alignment:
Q  9 accaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaatttccggtctat 89  Q
    ||||| |||| | ||||| |||| ||||| ||| ||||||||||||||| |||||| ||||| |||||| |||| ||||||    
T  4489629 accaatagtgttaaattaagcactcgataatgattttgcttcaaacgtttagcttctaccaccactcaagttccagtctat 4489709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 7313445 - 7313413
Alignment:
Q  220 ttattattataaggcttaaatatgtatttgatc 252  Q
    |||||||||| ||||||||||||||||||||||    
T  7313445 ttattattattaggcttaaatatgtatttgatc 7313413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 4397375 - 4397454
Alignment:
Q  10 ccaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaatttccggtctat 89  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||  ||||||||||    
T  4397375 ccaacaatgatcaattaggcacccgatagtgattttgcttcaaacgttcagcttcgaccaccactcaagatccggtctat 4397454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 38710128 - 38710049
Alignment:
Q  10 ccaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaatttccggtctat 89  Q
    |||||||||||||||| ||||||| || |||| |||||||||| ||||||||||||||||| |||||| |||||||||||    
T  38710128 ccaacagtgatcaatttggcacccaatggtgattttgcttcaagcgttcagcttcgaccaccactcaagttccggtctat 38710049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 25362449 - 25362370
Alignment:
Q  10 ccaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaatttccggtctat 89  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||| | ||| |||||| |||||||||||    
T  25362449 ccaacagtgatcaattaggcacccgatagagattttgcttcaaacgttcagcttcaatcaccactcaagttccggtctat 25362370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 35847274 - 35847195
Alignment:
Q  10 ccaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaatttccggtctat 89  Q
    |||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| | |||||||||    
T  35847274 ccaacatttatcaattaggcacccgatagtgattttgcttcaaacgttcagcttcgaccaccactcaagtcccggtctat 35847195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 17218891 - 17218824
Alignment:
Q  10 ccaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaa 77  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||    
T  17218891 ccaacagtgaacaattaggcacccaatagtgattttgcttcaaaagttcagcttcgaccaccactcaa 17218824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 29686001 - 29685923
Alignment:
Q  11 caacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaatttccggtctat 89  Q
    |||||||| ||||||| ||||| |||| ||| |||||||||||||||||||||| ||||| || ||| |||||||||||    
T  29686001 caacagtggtcaattaagcacctgataatgactttgcttcaaacgttcagcttccaccaccacacaaattccggtctat 29685923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 39369037 - 39368972
Alignment:
Q  10 ccaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactca 76  Q
    ||||||||||| ||| |||||||||| |||||  ||||||||||||||||||||||||||| |||||    
T  39369037 ccaacagtgataaataaggcacccga-agtgacattgcttcaaacgttcagcttcgaccaccactca 39368972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 2707238 - 2707170
Alignment:
Q  9 accaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaa 77  Q
    ||||||||| |||||||| ||||||  || ||| ||||||||||||||||||||| |||||| ||||||    
T  2707238 accaacagtaatcaattaagcacccagtaatgattttgcttcaaacgttcagctttgaccaccactcaa 2707170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 40377771 - 40377692
Alignment:
Q  10 ccaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaatttccggtctat 89  Q
    |||||||||||||||||||  | | ||||||| ||| |||||||||||||| ||| ||||| ||||||  ||||||||||    
T  40377771 ccaacagtgatcaattaggtcctcaatagtgattttacttcaaacgttcaggttccaccaccactcaagatccggtctat 40377692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 16285242 - 16285167
Alignment:
Q  10 ccaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaatttccggt 85  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| |||||| |||||| |||||||    
T  16285242 ccaacagtgattaattaggcacccgatagtgattttgcttcaaatgttcagctttgaccaccactcaagttccggt 16285167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 17324062 - 17324127
Alignment:
Q  10 ccaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactc 75  Q
    |||||||||||||||| | |||| |||||||| |||||||||||||||||||||||||||| ||||    
T  17324062 ccaacagtgatcaattcgacacctgatagtgattttgcttcaaacgttcagcttcgaccaccactc 17324127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 23087687 - 23087608
Alignment:
Q  10 ccaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaatttccggtctat 89  Q
    |||||| |||||||||||||| |||||||||| ||| ||||||||||||||||||||| |  |||||| ||||| |||||    
T  23087687 ccaacaatgatcaattaggcatccgatagtgattttacttcaaacgttcagcttcgactatcactcaagttccgatctat 23087608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 29016644 - 29016576
Alignment:
Q  20 tcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaatttccggtctat 89  Q
    ||||||| |||||||||| ||| |||||||||||| || |||||||||||| |||||| |||||||||||    
T  29016644 tcaattacgcacccgataatga-tttgcttcaaacattgagcttcgaccaccactcaaattccggtctat 29016576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 45181770 - 45181691
Alignment:
Q  10 ccaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaatttccggtctat 89  Q
    ||||| ||||||||||||||||  ||||||||  ||| |||| | ||| |||||||||||| ||| || |||||||||||    
T  45181770 ccaacggtgatcaattaggcacttgatagtgatattgattcagatgtttagcttcgaccaccacttaagttccggtctat 45181691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 91 - 190
Target Start/End: Original strand, 25914425 - 25914521
Alignment:
Q  91 agaacacagcagtgatttgaatcttcttatatcagaccgaaagaaaaaattgacaaacaagaactccaccaaaagaagcaatccaacagaaaccgattaa 190  Q
    |||||| |||||||||| ||||||||||||| ||| ||||||  || ||||||||||||| ||||||||||||||||||||||||| || |||| |||||    
T  25914425 agaacatagcagtgattagaatcttcttatagcagtccgaaa--aacaattgacaaacaa-aactccaccaaaagaagcaatccaatagcaaccaattaa 25914521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 26500179 - 26500259
Alignment:
Q  9 accaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaatttccggtctat 89  Q
    |||||||||| | ||| | |||||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||    
T  26500179 accaacagtggtgaataaagcacccgatattgattttgcttcaaacgttcagcttcgaccaccactcaagttccggtctat 26500259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 10388738 - 10388658
Alignment:
Q  9 accaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaatttccggtctat 89  Q
    ||||||| ||||||||||  ||||||| ||| | ||||||||||||||| |||||||||||| ||||||  ||||||||||    
T  10388738 accaacaatgatcaattacacacccgacagtaattttgcttcaaacgtttagcttcgaccaccactcaagatccggtctat 10388658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 1799322 - 1799255
Alignment:
Q  10 ccaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaa 77  Q
    ||||||||||||||  |||||||||||| |||  |||||||||||| |||||||||||||| ||||||    
T  1799322 ccaacagtgatcaaaaaggcacccgataatgatgttgcttcaaacgatcagcttcgaccaccactcaa 1799255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 89
Target Start/End: Complemental strand, 41958408 - 41958329
Alignment:
Q  10 ccaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaatttccggtctat 89  Q
    ||||||||||| |||||||| ||||||||||| |||| |||||| |||||||||||||||| |||||| || ||||||||    
T  41958408 ccaacagtgatgaattaggcgcccgatagtgattttgtttcaaatgttcagcttcgaccaccactcaagtttcggtctat 41958329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 23873955 - 23874013
Alignment:
Q  9 accaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgac 67  Q
    |||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||    
T  23873955 accaacagtgatcaattaggcatcagatagtgaatttgcgtcaaacgttcagcttcgac 23874013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 37128828 - 37128907
Alignment:
Q  10 ccaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaatttccggtctat 89  Q
    |||||| |||| |||||||||||||||||||| ||||| ||||| |||||||||||||||| | |||| || ||||||||    
T  37128828 ccaacaatgatgaattaggcacccgatagtgattttgcatcaaatgttcagcttcgaccaccattcaagtttcggtctat 37128907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 4397369 - 4397412
Alignment:
Q  44 ttgcttcaaacgttcagcttcgaccactactcaatttccggtct 87  Q
    ||||||||||||| ||||||||||||| |||||| |||||||||    
T  4397369 ttgcttcaaacgtacagcttcgaccaccactcaagttccggtct 4397412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 2570492 - 2570425
Alignment:
Q  10 ccaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaa 77  Q
    ||||||||||||||  |||||||||| ||||| ||||||||||| |||||||||||||||| ||||||    
T  2570492 ccaacagtgatcaaaaaggcacccgaaagtgattttgcttcaaaggttcagcttcgaccaccactcaa 2570425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 6003550 - 6003483
Alignment:
Q  10 ccaacagtgatcaattaggcacccgatagtgaatttgcttcaaacgttcagcttcgaccactactcaa 77  Q
    ||||||||||| ||  ||||||| |||| |||  ||||||||||||||||||||||||||| ||||||    
T  6003550 ccaacagtgataaaaaaggcacctgatattgatgttgcttcaaacgttcagcttcgaccaccactcaa 6003483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University