View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12431_low_8 (Length: 323)
Name: NF12431_low_8
Description: NF12431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12431_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 35744195 - 35743900
Alignment:
| Q |
18 |
acatcagaggatcttgtctgtgatttggacacaaatgaggatgatcatcatcaaaaaatggttaaacatgatcaagttatggaagaagtggagttaccac |
117 |
Q |
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| T |
35744195 |
acatcagaggatcttgtctgtgatttggacacaaatgaggatgatcatcatcaaaaaatggttaaacatgatcaagttatggaagaagtggagttaccac |
35744096 |
T |
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| Q |
118 |
tatctcctaaacaatttcaaccaaattctcctaaaccaacacaaacaccttctcatctgcaacaagcatcaatgtctatttcttcatcttctcccccacc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744095 |
tatctcctaaacaatttcaaccaaattctcctaaaccaacacaaacaccttctcatctacaacaagcatcaatgtctatttcttcatcttctcccccacc |
35743996 |
T |
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| Q |
218 |
ccctcctcccctacctgcaccattcacgataatgccnnnnnnngtacagatattaccaccctcggcacctccaccaccaccgcctccgccacctatgct |
316 |
Q |
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||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35743995 |
ccctcctcccctacctgcaccattc---atgatgccaaaaaaagtacagatattaccaccctcggcacctccaccaccaccgcctccgccacctatgct |
35743900 |
T |
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