View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12432_low_6 (Length: 274)
Name: NF12432_low_6
Description: NF12432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12432_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 8134883 - 8135128
Alignment:
| Q |
19 |
tgtttatgtcaatatcatgtgtggtgtttgatatcattgatcgattagaaatagtgtttgattatatgttgcactgaaatttaagattgaaaatgtgttt |
118 |
Q |
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| T |
8134883 |
tgtttatgtcaatatcatgtgtggtgtttgatatcattgattgattagaaatagtgtttgattatatgttgcactgaaatttcagattgaaaatgtgttt |
8134982 |
T |
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| Q |
119 |
ggtgtccgaggcatgctaatgttggacactaacacatcacccacacatgtacattcaatcgc-----nnnnnnnncttaaattattagaagtgtatatac |
213 |
Q |
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| T |
8134983 |
ggcgtccaaggcatgctaatgttggacactaacacatcacccacacatgtacattcaatcgctttttttttttctcttaaattattagaagtgtatatgc |
8135082 |
T |
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| Q |
214 |
gtatttatcaatgttgtgtctgatatatgtgtcgacgtgtcctatg |
259 |
Q |
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| T |
8135083 |
gtatgtatcaatgttgtgtctgatatacgtgtcgacgtgtcctatg |
8135128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 8134582 - 8134648
Alignment:
| Q |
103 |
gattgaaaatgtgtttggtgtccgaggcatgctaatgttggacactaacacatcacccacacatgta |
169 |
Q |
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| T |
8134582 |
gattgaatatatgtctggtgtccgagacatgctagtgttggatactaacacaacatccacgcatgta |
8134648 |
T |
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