View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12433_low_1 (Length: 419)
Name: NF12433_low_1
Description: NF12433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12433_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 33127420 - 33127831
Alignment:
| Q |
1 |
tggtacacgaagcaactaaaacgcattagcacaatccattgaactcgtaatacgagtgcaaaactaaataacaaaaaaggtgtgcgacctcacgatgaac |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
33127420 |
tggtacacgaagcaactaaaacacattagcacaatccatcgaactcgtaatacgagtgcaaaaccaaataacaaaaaaggtgtgtgacctcacgatgaac |
33127519 |
T |
|
| Q |
101 |
tcgaaccaacaacaacccaatgctagcagtagcacaacgaaaacacaaaccagtagtagcgaattgcaataaatagatcaacaacaacaacctagaagtg |
200 |
Q |
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| T |
33127520 |
tcgaaccaacaacaacccaatgctagcagtagcacaacgaaaacacaaaccagtagtagcgaattgcaataaatagatcaacaacaacaacctagaagtg |
33127619 |
T |
|
| Q |
201 |
aatcttccagatcgtgaagtacaaaaaaccagtcatagaattgcccttttat---atagggttaagggacaacatgttcgcttggatccaaacgatgaag |
297 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127620 |
aatcttccagatcgtgaagtacaaaaaatcagtcataaaattgcccttttatataatagggttaagggacaacatgttcgcttggatccaaacgatgaag |
33127719 |
T |
|
| Q |
298 |
agccaaaggagtaggaaacatgtaagaacgactagagccataggcggcaatggaaggccaccgaagaatatgcaatcatgaggaggggcatgcgtacaac |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33127720 |
agccaaaggagtaggaaacatgtaagaacgactagagccataggcggcaatggaaggccaccgaagaatatgcaatcatgaggaggggcatgcgtacaac |
33127819 |
T |
|
| Q |
398 |
ggtgttgatgtc |
409 |
Q |
| |
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|||||||||||| |
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| T |
33127820 |
ggtgttgatgtc |
33127831 |
T |
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