View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12434_high_1 (Length: 678)
Name: NF12434_high_1
Description: NF12434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12434_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 16 - 660
Target Start/End: Complemental strand, 31904506 - 31903856
Alignment:
| Q |
16 |
tgtgaaacgtgaaatttcaattatgagtaagcttcgtcatccgaatattgttcggcttcatgaagttcttgctacgaaaacgaagatctattttgttatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31904506 |
tgtgaaacgtgaaatttcaattatgagtaagcttcgtcatccgaatattgttcggcttcatgaagttcttgctacgaaaacgaagatctattttgttatg |
31904407 |
T |
|
| Q |
116 |
gagtttgctaaaggtggtgaattattcgccaaaattgccaataaaggacggtttagtgaagatttatcgcgtagactctttcaacagcttatctctgctg |
215 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31904406 |
gagtttgctaaaggtggtgaattattcgcaaaaattgccaataaaggacggtttagtgaagatttatcgcgtagactctttcaacagcttatctctgctg |
31904307 |
T |
|
| Q |
216 |
ttggatattgtcattcacacggtgtttttcatcgtgatttgaaacctgaaaatctgctactagatgataaggtattgatacaattgtattagcgaatgat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31904306 |
ttggatattgtcattcacacggtgtttttcatcgtgatttgaaacctgaaaatctgttactagatgataaggtattgatacaattgtattagcgaatgat |
31904207 |
T |
|
| Q |
316 |
tttgattttg------gttctgtaactaattgcaattttgtaatgatttatgaaactaattagtgttattctgttatggattttgtaatgaattgcaggg |
409 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||| |
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| T |
31904206 |
tttgattttgattttggttctgtaactaattgcaattttgtaatgatttatgaaactaattactgttattctgttatggattttgcaatgaattgtaggg |
31904107 |
T |
|
| Q |
410 |
gaatttgaaggtttcggattttggattgagtgcagtgaaagagcaagttcgaattgacgggatgttacacacgctttgtggaacacctgcatatgtggca |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31904106 |
gaatttgaaggtttcggattttggattgagtgcagtgaaagagcaagttcgaattgacgggatgttacacacgctttgtggaacacctgcatatgtggca |
31904007 |
T |
|
| Q |
510 |
ccggagattttagcgaagagaggttatgatggagctaaggtggatatttggtcatgtggtattatcctgtttgttcttgtggctggttatctaccattta |
609 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
31904006 |
ccggagattttagcgaagagaggttatgatggagctaaggtggatatttggtcatgtggtattatactgtttgttcttgtggctggttatcttccattta |
31903907 |
T |
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| Q |
610 |
atgatccaaatttgatggtgatgtataggaagatatatagcggggaattta |
660 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31903906 |
atgatccaaatttgatggtgatgtataggaagatatatagtggggaattta |
31903856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 524 - 643
Target Start/End: Original strand, 4982573 - 4982692
Alignment:
| Q |
524 |
gaagagaggttatgatggagctaaggtggatatttggtcatgtggtattatcctgtttgttcttgtggctggttatctaccatttaatgatccaaatttg |
623 |
Q |
| |
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||||| ||||||||||||||| |||| ||||||||||| |||||| |||| || |||||||| |||| |||| ||| || || |||||| |||||| |
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| T |
4982573 |
gaagaaaggttatgatggagccaaggcagatatttggtcttgtggtgttattctctttgttctattggcaggttttcttcctttcaatgatagaaattta |
4982672 |
T |
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| Q |
624 |
atggtgatgtataggaagat |
643 |
Q |
| |
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|||| |||||||| |||||| |
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| T |
4982673 |
atggagatgtataagaagat |
4982692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 643
Target Start/End: Complemental strand, 4956787 - 4956628
Alignment:
| Q |
484 |
tttgtggaacacctgcatatgtggcaccggagattttagcgaagagaggttatgatggagctaaggtggatatttggtcatgtggtattatcctgtttgt |
583 |
Q |
| |
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||||||| || ||||| ||||| ||||| ||| |||| || | || |||||||||||| || ||||| ||| ||||||| |||||| || | ||||||| |
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| T |
4956787 |
tttgtggtactcctgcttatgttgcacctgaggttttggctaggaaaggttatgatggtgcaaaggttgatctttggtcttgtggtgttgttttgtttgt |
4956688 |
T |
|
| Q |
584 |
tcttgtggctggttatctaccatttaatgatccaaatttgatggtgatgtataggaagat |
643 |
Q |
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| | ||||||||||| |||| ||| |||||| |||| | |||| ||||||| |||||| |
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| T |
4956687 |
tttgatggctggttatttaccttttcatgatcaaaatgttatggcaatgtataagaagat |
4956628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 640
Target Start/End: Complemental strand, 27312303 - 27312146
Alignment:
| Q |
483 |
ctttgtggaacacctgcatatgtggcaccggagattttagcgaagagaggttatgatggagctaaggtggatatttggtcatgtggtattatcctgtttg |
582 |
Q |
| |
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||||||||||| ||||| || |||||||| ||| || | || ||| |||| |||||||| || || || ||| ||||||||||||| || | |||||| |
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| T |
27312303 |
ctttgtggaacccctgcttacgtggcacctgaggttcttgctaagcgaggatatgatggtgccaaagttgatgtttggtcatgtggcgttgttttgtttg |
27312204 |
T |
|
| Q |
583 |
ttcttgtggctggttatctaccatttaatgatccaaatttgatggtgatgtataggaa |
640 |
Q |
| |
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| |||| ||| || ||||| || |||||||||| |||||| ||||| |||||| |||| |
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| T |
27312203 |
tccttgcggcgggatatcttccttttaatgatcaaaatttaatggttatgtatcggaa |
27312146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 27312615 - 27312540
Alignment:
| Q |
47 |
cttcgtcatccgaatattgttcggcttcatgaagttcttgctacgaaaacgaagatctattttgttatggagtttg |
122 |
Q |
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|||| |||||| |||||||||| ||||| ||||||||||| || || ||||| ||||||||||||||||| |||| |
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| T |
27312615 |
cttcatcatcctcatattgttcgtcttcacgaagttcttgccaccaagacgaaaatctattttgttatggattttg |
27312540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 552 - 644
Target Start/End: Original strand, 27278953 - 27279045
Alignment:
| Q |
552 |
gatatttggtcatgtggtattatcctgtttgttcttgtggctggttatctaccatttaatgatccaaatttgatggtgatgtataggaagata |
644 |
Q |
| |
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||||||||||| ||||| || | ||||||||| | |||| |||||||| || ||| |||| |||||||||| | |||||||||||||||| |
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| T |
27278953 |
gatatttggtcttgtggaatagttctgtttgttttattggcaggttatcttccttttcatgactcaaatttgatagagatgtataggaagata |
27279045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 616
Target Start/End: Original strand, 35828115 - 35828247
Alignment:
| Q |
484 |
tttgtggaacacctgcatatgtggcaccggagattttagcgaagagaggttatgatggagctaaggtggatatttggtcatgtggtattatcctgtttgt |
583 |
Q |
| |
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||||||| |||||||| ||||| || || ||| |||| | | || |||||||||||| |||||||| ||||||||||| ||||| || | ||||||| |
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| T |
35828115 |
tttgtggtacacctgcttatgttgctcctgaggttttgtctaggaaaggttatgatggtgctaaggttgatatttggtcttgtggggttgttttgtttgt |
35828214 |
T |
|
| Q |
584 |
tcttgtggctggttatctaccatttaatgatcc |
616 |
Q |
| |
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| | ||||||||||| |||| ||| ||||||| |
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| T |
35828215 |
tttgatggctggttatttaccttttcatgatcc |
35828247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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