View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12434_low_2 (Length: 412)
Name: NF12434_low_2
Description: NF12434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12434_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 200 - 368
Target Start/End: Complemental strand, 24854999 - 24854831
Alignment:
| Q |
200 |
tcatagaatgtcttttgactcttataatgcatggattctaattagttgttgtactcatttggtacaattattttacggctaatacaggtgcataatagtc |
299 |
Q |
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| T |
24854999 |
tcatagaatgtcttttgactcttataatgcatggattctaattagttgttgtactcatttggtacaattattttacggctaatacaggtgcataatagtc |
24854900 |
T |
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| Q |
300 |
aaaacttttgatgcattattattaaccgtttcaagatttggctatcaactacttttatggatattttat |
368 |
Q |
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| T |
24854899 |
aaaacttttgatgcattattattaaccgtttcaagatttggctatcaactacttttatggatattttat |
24854831 |
T |
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Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 24855236 - 24855052
Alignment:
| Q |
18 |
ttgatgatgtggttccactatgtaagagccattgcatatgaataatgaagctaggaatatcatgagaagtgtgataattgtcttttgttgatacattttg |
117 |
Q |
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| T |
24855236 |
ttgatgatgtggttccactatgtaagagccattgcatatgaataatgaagctaggaatatcatgagaagtgtgataattgtcttttcttgatacattttg |
24855137 |
T |
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| Q |
118 |
ttga--nnnnnnnnngagatagatggagagaattgtggtggttgtgccaaatgatgggctaatgttaggtagttatagaaaaatt |
200 |
Q |
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| T |
24855136 |
ttgatttttttttgtgagatagatggagagaattgtggtggttgtgccaaatgatgggctaatgttatgtagttatagaaaaatt |
24855052 |
T |
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