View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12434_low_5 (Length: 350)
Name: NF12434_low_5
Description: NF12434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12434_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 31059993 - 31060332
Alignment:
| Q |
1 |
tcaatgaacgaatttaatttagaaatcatgtctaaatattgagcgaataaaattgatcacacggggaagagtttcttacctttatttatcacgacatgct |
100 |
Q |
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| T |
31059993 |
tcaatgaacgaatttaatttagaaatcatgtctaaatattgagcgaataaaattgatcacacggggaagagtttcttacctttatttatcacgacatgct |
31060092 |
T |
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| Q |
101 |
tggctaactggctccctggagttgtgatttctgtaaaagagtagaaaagcacggaaaatgttggttac-aattgtgtagatgcggcgatg---tttggtt |
196 |
Q |
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| T |
31060093 |
tggctaactggctccctggagttgtgatttctgtaaaagagtagaaaagcacggaaaatgttggttacaaattgtgtagatgcggcgatgtaatttgatt |
31060192 |
T |
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| Q |
197 |
gggcgtttcctcacagacagacccgggagagtgcatatgttgagggaaaacaaggcaggcatatgttctccagtttgtgtcaattaaggaagcaaatctg |
296 |
Q |
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| T |
31060193 |
gggcgtttcctcacagacagacacgggagagtgcatatgttgagggaaaacaaggcaggcgtaagttctccagtttgtgtcaattaaggaagcaaatttc |
31060292 |
T |
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| Q |
297 |
tgaacgttcctattccaattttttcaccatcttgatgtcca |
337 |
Q |
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| T |
31060293 |
tgaa-gttcctattccaattttttcaccatcttgatgtcca |
31060332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 31142514 - 31142580
Alignment:
| Q |
16 |
aatttagaaatcatgtctaaatattgagcgaataaaattgatcacacggggaagagtttcttacctt |
82 |
Q |
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|||||| ||| ||| |||||| | ||||||||||||||||||||||| | ||||||||||| ||||| |
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| T |
31142514 |
aatttacaaaacatatctaaagaatgagcgaataaaattgatcacacagcgaagagtttctaacctt |
31142580 |
T |
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