View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12434_low_6 (Length: 320)
Name: NF12434_low_6
Description: NF12434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12434_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 140 - 309
Target Start/End: Complemental strand, 51824590 - 51824421
Alignment:
| Q |
140 |
caaaaatcacattttatataccaactgattccatccaattcaaggtttgctgaagagccaaagcctcttgtgtcactagaaattgatgcataatgtcatt |
239 |
Q |
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| T |
51824590 |
caaaaatcacattttatataccaactgattccatccaattcaaggtttgctgaagagccaaagcctcttgtgtcactagaaattgatgcataatgtcatt |
51824491 |
T |
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| Q |
240 |
ttcttagtaaagaaaatcttaattttaattctagtccattgtgcaaattggtttgcctcttgttatttac |
309 |
Q |
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| T |
51824490 |
ttcttagtaaagaaaatcttaattttaattctagtccattgtgcaaattggttggcctcttgttatttac |
51824421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 51824937 - 51824794
Alignment:
| Q |
1 |
ataaatcctttttccatgtctctgtctatcctttattgaaatgttgaaacattctcaatcaagggtgaactcaacgtctagaactactttgtgatgagat |
100 |
Q |
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| T |
51824937 |
ataaatcctttttccatgtctctgtctatccttgattgaaatgttgaaacattctcaatcaagggtgaattcaacgtcaagaactaatttgtgatgagat |
51824838 |
T |
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| Q |
101 |
ttgtttgatgcataaattatattattctttcgacgcaagcaaaa |
144 |
Q |
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| T |
51824837 |
ttgtttgatgcataaattatattattctttcgacgcaagcaaaa |
51824794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 51827720 - 51827644
Alignment:
| Q |
232 |
atgtcattttcttagtaaagaaaatcttaattttaattctagtccattgtgcaaattggtttgcctcttgttattta |
308 |
Q |
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| T |
51827720 |
atgtcattttcttagtattaaaaatcttaatctagattctagttcattgtgcaaattgatttgcctcttgttattta |
51827644 |
T |
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