View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12434_low_7 (Length: 283)
Name: NF12434_low_7
Description: NF12434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12434_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 39487748 - 39487998
Alignment:
| Q |
13 |
ctgtgattgatctcggatggagatggtcgattggtaatgggcaacaagttaaaatctggaaagacccttggcttcctgaactgtcgagcttcaaggtgtg |
112 |
Q |
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| T |
39487748 |
ctgtgattgatctcggatggagatggtcgattggtaatgggcaacaagttaaaatctggaaagacccttggcttcctgaactgtcgagcttcaaggtgtg |
39487847 |
T |
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| Q |
113 |
gagcccagtcttcaatttaaatgaggatgctgttgtagcagatttaattgatgttgatttgaaacaatggaaaaaagaacttgtgctgcatagtttcaat |
212 |
Q |
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| T |
39487848 |
gagcccagtctgcaatttaaatgaggatgctgttgtagcagatttaattgatgttgatttgaaacaatggaaaaaagaacttgtgctgcatagtttcaat |
39487947 |
T |
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| Q |
213 |
gctttcgaagccaatcaaattctcaacattcctatttcatggagactgccc |
263 |
Q |
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| T |
39487948 |
gctttcgaagccaaccaaattctcaacattcctatttcatggagactgccc |
39487998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 5806991 - 5806906
Alignment:
| Q |
36 |
tggtcgattggtaatgggcaacaagttaaaatctggaaagacccttggcttcctgaactgtcgagcttcaaggtgtggagcccagt |
121 |
Q |
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| T |
5806991 |
tggtcaattggaaacgggcaacaagttagaatatggaaggacccttggcttcctgagttaccaagcttcaaggtttggagtccagt |
5806906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 46033871 - 46034120
Alignment:
| Q |
13 |
ctgtgattgatctcggatggagatggtcgattggtaatgggcaacaagttaaaatctggaaagacccttggcttcctgaactgtcgagcttcaaggtgtg |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
46033871 |
ctgtaattgatctcggatggagatggtcgattggtaatgggcaa-aagttaaaatttggaaagacctttggcttcctgaactgtcaagcttcaaggtgta |
46033969 |
T |
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| Q |
113 |
gagcccagtcttcaatttaaatgaggatgctgttgtagcagatttaattgatgttgatttgaaacaatggaaaaaagaacttgtgctgcatagtttcaat |
212 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46033970 |
gagcccagtctacaatttaaatgaggatgttgttgtagcagatttaattgatgttgatttgaaacaatggaaaaaagaacttgtgctgcatagtttcaat |
46034069 |
T |
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| Q |
213 |
gctttcgaagccaatcaaattctcaacattcctatttcatggagactgccc |
263 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46034070 |
gctttcgaagccaaccaaattctcaacattcctatttcatggagactgccc |
46034120 |
T |
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