View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12434_low_9 (Length: 239)
Name: NF12434_low_9
Description: NF12434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12434_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 41288395 - 41288480
Alignment:
| Q |
115 |
aggagaaaacttatatgcagtaccttatatactggtggttttgttccctatcagaaaataacacgtggcatgtacactataatttt |
200 |
Q |
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| T |
41288395 |
aggagaaaacttatatgcagtaccttatatactggtggtactgttccctatcagaaaataacacgtggcatgtacactataatttt |
41288480 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 30517608 - 30517676
Alignment:
| Q |
115 |
aggagaaaacttatatgcagtaccttatatactggtggttttgttccctatcagaaaataacacgtggc |
183 |
Q |
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| T |
30517608 |
aggagaaaacttaggtacagtaccttgtgtgctggtggtactgttccctatcagaaaataacacgtggc |
30517676 |
T |
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