View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12435_high_1_N (Length: 357)
Name: NF12435_high_1_N
Description: NF12435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12435_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 29 - 355
Target Start/End: Complemental strand, 53491937 - 53491611
Alignment:
| Q |
29 |
aggaatctgccttaatatatgcatctttggcatctgtaatgagtatttgaggcctttcctcctgttcaattttcctaggcatttattccaaacactggtt |
128 |
Q |
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| T |
53491937 |
aggaatctgccttaatatatgcatctttggcatctgtaatgagtatttgaggcctttcctcctgttcaattttcctaggcatttattccaaacactggtt |
53491838 |
T |
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| Q |
129 |
gtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttg |
228 |
Q |
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| T |
53491837 |
gtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttg |
53491738 |
T |
|
| Q |
229 |
gcagaattcatggggctattatactcgaactgtaagcttttaatgtctagagtatacatgaatggaagaactccttttatgtacgattgcatttatgttt |
328 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| ||| |
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| T |
53491737 |
gcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatattt |
53491638 |
T |
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| Q |
329 |
tagtccgcttatttaacagattggagc |
355 |
Q |
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| T |
53491637 |
ttgtccgcttttttaacagattggagc |
53491611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 91 - 357
Target Start/End: Complemental strand, 53499468 - 53499202
Alignment:
| Q |
91 |
tgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggta |
190 |
Q |
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| T |
53499468 |
tgttcagttttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgcttgggacaaaagtttgctgaaaagttcgaggta |
53499369 |
T |
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| Q |
191 |
aaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattatactcgaactgtaagcttttaatgtctagagtatacatgaa |
290 |
Q |
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| T |
53499368 |
aaatttgaagataagaagggagagaaagcaatggtttggcagaactcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaa |
53499269 |
T |
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| Q |
291 |
tggaagaactccttttatgtacgattgcatttatgttttagtccgcttatttaacagattggagcaa |
357 |
Q |
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| T |
53499268 |
tggaagaactccttttatgtacgattgcatttatattttagtccgcttatttaacagattggagcaa |
53499202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 91 - 277
Target Start/End: Complemental strand, 16070576 - 16070390
Alignment:
| Q |
91 |
tgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggta |
190 |
Q |
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||||||||||| |||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||| || |
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| T |
16070576 |
tgttcaatttttctaggcttttattccaaacattggtcgtgggatacaaggtgcagctacccattgtttgggacaaaagtttgctgagaagtttgagata |
16070477 |
T |
|
| Q |
191 |
aaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattatactcgaactgtaagcttttaatgtcta |
277 |
Q |
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|| |||||||||| ||||| ||||||| |||||||||||||||| |||||||| | || ||||||||||||||||||| |||||||| |
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| T |
16070476 |
aactttgaagataagaaggtagagaaaacaatggtttggcagaactcatgggggttttctactcgaactgtaagctttcaatgtcta |
16070390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 53499936 - 53499888
Alignment:
| Q |
29 |
aggaatctgccttaatatatgcatctttggcatctgtaatgagtatttg |
77 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||| |||| |
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| T |
53499936 |
aggaatctgccttactatatgcatttttggcatctgtaatgagtctttg |
53499888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 268
Target Start/End: Original strand, 45354908 - 45355076
Alignment:
| Q |
100 |
ttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaa |
199 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||| ||||||| |||||| ||| ||| ||| |||| | |||| |
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| T |
45354908 |
ttcctaggcatttattccaaacactggtcgtggtatacaaggtgcaacttctcattgtttgggacaaaattttgctaaaatgtttgagataaactatgaa |
45355007 |
T |
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| Q |
200 |
gatatgaagggagagaaagcaatggtttggcagaattcatggggctattatactcgaactgtaagcttt |
268 |
Q |
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|| ||||||||||||||||||||| |||||||| || |||| |||| ||||||||||||||||||| |
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| T |
45355008 |
aatgagaagggagagaaagcaatggtctggcagaactcgtgggcctatagtactcgaactgtaagcttt |
45355076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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