View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12435_low_1 (Length: 352)

Name: NF12435_low_1
Description: NF12435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12435_low_1
NF12435_low_1
[»] chr3 (31 HSPs)
chr3 (1-344)||(10323240-10323583)
chr3 (1-344)||(2364405-2364748)
chr3 (1-344)||(19919898-19920241)
chr3 (2-344)||(34332485-34332827)
chr3 (136-344)||(7312904-7313112)
chr3 (92-344)||(40930299-40930540)
chr3 (172-344)||(7032434-7032606)
chr3 (200-258)||(48569907-48569965)
chr3 (129-261)||(962960-963092)
chr3 (164-227)||(31547616-31547679)
chr3 (2-72)||(17097547-17097617)
chr3 (164-234)||(26846105-26846175)
chr3 (164-234)||(47537506-47537576)
chr3 (164-229)||(44888147-44888212)
chr3 (185-229)||(9509997-9510041)
chr3 (185-229)||(9517972-9518016)
chr3 (2-70)||(20531720-20531788)
chr3 (1-64)||(48569708-48569771)
chr3 (199-261)||(3141063-3141125)
chr3 (164-234)||(15279803-15279873)
chr3 (192-234)||(26010285-26010327)
chr3 (1-64)||(12341924-12341987)
chr3 (17-72)||(15312981-15313036)
chr3 (164-231)||(48192040-48192107)
chr3 (191-261)||(2756053-2756123)
chr3 (200-258)||(19890892-19890950)
chr3 (191-229)||(31675173-31675211)
chr3 (191-229)||(31921209-31921247)
chr3 (17-81)||(3141242-3141306)
chr3 (185-229)||(17620293-17620337)
chr3 (191-227)||(27924925-27924961)
[»] chr4 (33 HSPs)
chr4 (1-344)||(47418932-47419275)
chr4 (1-344)||(23642260-23642603)
chr4 (7-340)||(15740353-15740686)
chr4 (2-342)||(19755397-19755737)
chr4 (2-342)||(19784069-19784409)
chr4 (1-344)||(1828209-1828552)
chr4 (123-342)||(47685686-47685905)
chr4 (272-344)||(13270831-13270903)
chr4 (212-344)||(7404041-7404177)
chr4 (131-258)||(54482958-54483085)
chr4 (1-258)||(48312309-48312565)
chr4 (1-64)||(2821703-2821766)
chr4 (1-64)||(54482828-54482891)
chr4 (185-234)||(20395834-20395883)
chr4 (164-231)||(42778479-42778546)
chr4 (164-231)||(53486785-53486852)
chr4 (212-258)||(2821917-2821963)
chr4 (179-229)||(4640526-4640576)
chr4 (191-261)||(46145886-46145956)
chr4 (178-227)||(35324211-35324260)
chr4 (186-234)||(29553594-29553642)
chr4 (186-234)||(49926120-49926168)
chr4 (17-72)||(7098882-7098937)
chr4 (216-259)||(11587082-11587125)
chr4 (164-231)||(18106388-18106455)
chr4 (186-229)||(23657638-23657681)
chr4 (2-72)||(5789762-5789832)
chr4 (1-69)||(11586867-11586935)
chr4 (186-234)||(19647947-19647995)
chr4 (185-229)||(28713171-28713215)
chr4 (164-228)||(34322151-34322215)
chr4 (189-229)||(46543222-46543262)
chr4 (1-73)||(55725375-55725447)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-344)||(105512-105855)
[»] chr8 (20 HSPs)
chr8 (1-344)||(8299931-8300274)
chr8 (1-344)||(7924514-7924857)
chr8 (11-344)||(13396516-13396849)
chr8 (123-344)||(172231-172452)
chr8 (2-344)||(41665038-41665381)
chr8 (1-327)||(32266707-32267033)
chr8 (1-344)||(9922729-9923072)
chr8 (1-258)||(13879156-13879413)
chr8 (1-258)||(25090601-25090858)
chr8 (1-64)||(17699888-17699951)
chr8 (1-64)||(20824707-20824770)
chr8 (190-234)||(12134566-12134610)
chr8 (1-64)||(42177218-42177281)
chr8 (164-230)||(17659073-17659139)
chr8 (185-229)||(25193332-25193376)
chr8 (177-228)||(15439412-15439463)
chr8 (177-228)||(15530716-15530767)
chr8 (164-234)||(23680400-23680470)
chr8 (200-241)||(13200296-13200337)
chr8 (164-229)||(28993061-28993126)
[»] chr7 (23 HSPs)
chr7 (1-344)||(4937797-4938140)
chr7 (1-344)||(11276917-11277264)
chr7 (2-344)||(47877111-47877453)
chr7 (1-344)||(29968103-29968445)
chr7 (2-344)||(235108-235449)
chr7 (1-344)||(17720763-17721106)
chr7 (91-344)||(37919672-37919925)
chr7 (164-229)||(22819549-22819614)
chr7 (164-231)||(34231940-34232007)
chr7 (164-229)||(17055772-17055837)
chr7 (164-234)||(4077513-4077583)
chr7 (185-229)||(28173829-28173873)
chr7 (191-259)||(36363737-36363805)
chr7 (186-229)||(11338990-11339033)
chr7 (188-223)||(27854298-27854333)
chr7 (1-60)||(37255170-37255229)
chr7 (164-234)||(27218952-27219022)
chr7 (200-258)||(37254972-37255030)
chr7 (200-234)||(45943089-45943123)
chr7 (185-234)||(7458524-7458573)
chr7 (186-227)||(27941348-27941389)
chr7 (186-230)||(25924312-25924356)
chr7 (186-234)||(45992814-45992862)
[»] chr1 (22 HSPs)
chr1 (1-344)||(6050731-6051074)
chr1 (1-344)||(35541177-35541520)
chr1 (2-344)||(11908775-11909117)
chr1 (254-344)||(51052608-51052698)
chr1 (1-72)||(47622746-47622817)
chr1 (189-344)||(47622934-47623089)
chr1 (128-261)||(2491423-2491556)
chr1 (164-229)||(22191613-22191678)
chr1 (1-64)||(43388773-43388836)
chr1 (164-229)||(21405081-21405146)
chr1 (164-233)||(30110757-30110826)
chr1 (164-231)||(17708220-17708287)
chr1 (179-229)||(3073993-3074043)
chr1 (185-234)||(47106534-47106583)
chr1 (185-229)||(52691715-52691759)
chr1 (167-229)||(26805204-26805266)
chr1 (149-211)||(43944291-43944353)
chr1 (185-234)||(10711014-10711063)
chr1 (185-229)||(20987417-20987461)
chr1 (186-234)||(25504847-25504895)
chr1 (177-229)||(28358133-28358185)
chr1 (185-229)||(52470035-52470079)
[»] chr5 (28 HSPs)
chr5 (1-344)||(42513848-42514191)
chr5 (2-344)||(30731984-30732326)
chr5 (2-344)||(12825327-12825669)
chr5 (1-344)||(27116842-27117173)
chr5 (1-344)||(23238512-23238854)
chr5 (1-344)||(31641639-31641982)
chr5 (1-344)||(35983460-35983803)
chr5 (1-344)||(28535344-28535687)
chr5 (6-344)||(42928259-42928597)
chr5 (1-258)||(27795697-27795954)
chr5 (1-64)||(10777192-10777255)
chr5 (191-261)||(24408139-24408209)
chr5 (191-261)||(33169869-33169939)
chr5 (1-63)||(8299851-8299913)
chr5 (164-234)||(20208551-20208621)
chr5 (1-63)||(25857093-25857155)
chr5 (178-225)||(23878398-23878445)
chr5 (189-259)||(18089618-18089688)
chr5 (191-260)||(27165789-27165858)
chr5 (185-228)||(380145-380188)
chr5 (164-231)||(4415532-4415599)
chr5 (191-229)||(476456-476494)
chr5 (186-232)||(11574548-11574594)
chr5 (186-232)||(22095104-22095150)
chr5 (185-234)||(7000618-7000667)
chr5 (33-70)||(18089464-18089501)
chr5 (186-234)||(4324187-4324235)
chr5 (17-81)||(33170049-33170113)
[»] scaffold0472 (1 HSPs)
scaffold0472 (5-344)||(3380-3719)
[»] chr6 (36 HSPs)
chr6 (91-342)||(2553767-2554018)
chr6 (96-344)||(21168327-21168574)
chr6 (38-344)||(24767135-24767436)
chr6 (1-344)||(15958482-15958825)
chr6 (9-73)||(33185834-33185898)
chr6 (189-344)||(14372848-14373003)
chr6 (265-344)||(18651167-18651246)
chr6 (185-229)||(26513967-26514011)
chr6 (191-261)||(13937911-13937981)
chr6 (1-72)||(14372660-14372731)
chr6 (1-64)||(17573325-17573388)
chr6 (1-64)||(17606003-17606066)
chr6 (164-234)||(649898-649968)
chr6 (164-234)||(18051281-18051351)
chr6 (164-231)||(9199084-9199151)
chr6 (1-64)||(10576919-10576982)
chr6 (1-64)||(21629776-21629839)
chr6 (164-234)||(17079023-17079093)
chr6 (164-234)||(19350182-19350252)
chr6 (164-234)||(29976847-29976917)
chr6 (194-263)||(20882895-20882964)
chr6 (164-229)||(29055763-29055828)
chr6 (164-230)||(11060694-11060757)
chr6 (185-229)||(25350466-25350510)
chr6 (41-80)||(10921949-10921988)
chr6 (1-64)||(20882702-20882765)
chr6 (186-232)||(5085880-5085926)
chr6 (199-253)||(18682401-18682455)
chr6 (200-234)||(25318092-25318126)
chr6 (200-234)||(26205586-26205620)
chr6 (189-234)||(333532-333577)
chr6 (185-234)||(17873671-17873720)
chr6 (185-229)||(900707-900751)
chr6 (17-81)||(13938110-13938174)
chr6 (186-234)||(19255878-19255926)
chr6 (186-234)||(33640156-33640204)
[»] chr2 (20 HSPs)
chr2 (126-344)||(41207144-41207362)
chr2 (274-344)||(4552297-4552367)
chr2 (1-344)||(28252848-28253191)
chr2 (131-258)||(40176882-40177009)
chr2 (178-226)||(12807996-12808044)
chr2 (185-229)||(18844486-18844530)
chr2 (179-234)||(36804150-36804205)
chr2 (204-258)||(12645750-12645804)
chr2 (179-229)||(16315622-16315672)
chr2 (1-73)||(12645935-12646007)
chr2 (185-257)||(31093468-31093540)
chr2 (164-227)||(1380327-1380390)
chr2 (164-231)||(2999580-2999647)
chr2 (186-229)||(18489051-18489094)
chr2 (179-234)||(36804365-36804420)
chr2 (1-72)||(40177068-40177139)
chr2 (200-234)||(22052865-22052899)
chr2 (178-216)||(31071643-31071681)
chr2 (200-258)||(38604247-38604305)
chr2 (190-240)||(44547706-44547756)
[»] scaffold0179 (2 HSPs)
scaffold0179 (164-234)||(7766-7836)
scaffold0179 (164-234)||(12700-12770)
[»] scaffold0007 (1 HSPs)
scaffold0007 (185-234)||(182367-182416)
[»] scaffold0369 (1 HSPs)
scaffold0369 (313-344)||(11186-11217)
[»] scaffold0555 (1 HSPs)
scaffold0555 (191-229)||(7911-7949)
[»] scaffold0112 (1 HSPs)
scaffold0112 (164-234)||(15482-15552)
[»] scaffold0043 (1 HSPs)
scaffold0043 (191-229)||(34468-34506)


Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 10323240 - 10323583
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  10323240 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttccgcgccttttt 10323339  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  10323340 ggcttgtctgttcacaattcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgcggtggcgtaggcggttgtgggctt 10323439  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  10323440 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctagttacctaatcaagctga 10323539  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  10323540 tgggtattcagtacgtggagtctatgatatgctgacatcacagg 10323583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 2364748 - 2364405
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||    
T  2364748 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgtccggtttaggcgccttttt 2364649  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | |||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  2364648 gacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggctt 2364549  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | |||    
T  2364548 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatga 2364449  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  2364448 tgggtattctgtacgtggagtctatgacatgctgacatcacagg 2364405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 19919898 - 19920241
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| | || |||  | ||||| || |||||||||||||||    
T  19919898 ttgtgttaggaggagggtgggagatggtgcagatactgatttttggcgtgattgctggtgtggagctgatccattgtgtgtccgatttccgcgccttttt 19919997  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | |||| |||||||||| ||  ||||||||||||||||||| |||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||    
T  19919998 gacttgactgttcacaaatctatctcagttaggaatatgtttctgctgggggtggatgtgggcggggaggcattgaggtgtcgtaggaggttgtgggctt 19920097  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| | |||    
T  19920098 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatga 19920197  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||    
T  19920198 tgggtattctgtacgtggagtctatgacatgttgacatcacagg 19920241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 344
Target Start/End: Original strand, 34332485 - 34332827
Alignment:
Q  2 tgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgcctttttg 101  Q
    |||||||||||||| ||||||||||| |||||  | ||||||||||||||| ||||||||||  ||||||| || ||||| ||||||  |||||||||||    
T  34332485 tgtgttaggaggagggtgggagatggtgcagactcagatttttggcgtgatcgttggtgtggaaatgttccactgtgtgtccggtttaggcgcctttttg 34332584  T
Q  102 gcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttg 201  Q
     ||||  ||||  ||| ||| |||||||||||||||||||| || ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||    
T  34332585 acttgaatgttatcaaatcaatctcagttaggaatatgttcttgttgggggtggacatgggtggggaggcgttgcggtggcgtaggcggttgtgggcttg 34332684  T
Q  202 ggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgat 301  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| ||| |||||||| |||||||||||||| | || |    
T  34332685 ggaggaggagttggtagaggagtgtagggttttattactaacagtttctttgcaggaatcagtgtcagacagatggctttggttacctaatcaggatggt 34332784  T
Q  302 gggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    |||||||  |||||||||| |||||||||||||||||||||||    
T  34332785 gggtattatgtacgtggagcctatgacatgctgacatcacagg 34332827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 136 - 344
Target Start/End: Complemental strand, 7313112 - 7312904
Alignment:
Q  136 tatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggctttg 235  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7313112 tatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttgggaggaggagttggtagaggagtgtagggctttg 7313013  T
Q  236 ttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgatgggtattcagtacgtggagtctatgacatgctga 335  Q
    ||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||    
T  7313012 ttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgatgggtattctgtacgtggagtctatgacatgctga 7312913  T
Q  336 catcacagg 344  Q
    |||||||||    
T  7312912 catcacagg 7312904  T

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Target: chr3; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 92 - 344
Target Start/End: Original strand, 40930299 - 40930540
Alignment:
Q  92 cgcctttttggcttgtctgttcacaattcactctcagttaggaatatgttcctgctggggg-tggacgtgggcggggaggcgttgcggtggcgtaggagg 190  Q
    ||||||| || |||| ||||  |||| ||| |||| ||||||||||||||| || |||||| |||| ||||| ||||||||||||||||||             
T  40930299 cgcctttatgacttggctgtgaacaaatcaatctctgttaggaatatgttcttgttggggggtggatgtgggtggggaggcgttgcggtgg--------- 40930389  T
Q  191 ttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttaccta 290  Q
       |||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||  | |||||||||| |||||||| |    
T  40930390 ---tgggcttgggaggaagagttggtagaggagtgtagggttttattactaacagtttctttgcaagaatcagtgacaaatagatggctttggttaccaa 40930486  T
Q  291 atcaagctgatgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    |||| | || || |||||| ||||||||||||||||||||||||||||||||||    
T  40930487 atcaggatggtgtgtattctgtacgtggagtctatgacatgctgacatcacagg 40930540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 172 - 344
Target Start/End: Complemental strand, 7032606 - 7032434
Alignment:
Q  172 gttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagat 271  Q
    |||||||||||||||| | ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| | |||||||| || ||| |||||    
T  7032606 gttgcggtggcgtaggcgtttgtgggcttgggaggaagagttggtagaggagtttagggctttattactaacagttacattgcaggaatcggtgatagat 7032507  T
Q  272 agatggctctggttacctaatcaagctgatgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    |||||||| ||||||   | ||  |  | ||||||||  || |||||||||||||||||||||||||||||||    
T  7032506 agatggctttggttattaattctggacggtgggtattttgttcgtggagtctatgacatgctgacatcacagg 7032434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 48569907 - 48569965
Alignment:
Q  200 tgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 258  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||| |||||||||||    
T  48569907 tgggaggaggacttggtagaggagtgtagggctttactactaacagtctctttgcagga 48569965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 261
Target Start/End: Original strand, 962960 - 963092
Alignment:
Q  129 ttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtag 228  Q
    ||||||| ||||||| | ||||  |||| || || |||| ||||| || ||||||| |  | ||||||| ||||||||| || |||||||||||||||||    
T  962960 ttaggaacatgttccagttgggtttggaggttggtgggggggcgtggcagtggcgtcgccgcttgtgggtttgggaggaagaattggtagaggagtgtag 963059  T
Q  229 ggctttgttactaacagtttctttgcaggattc 261  Q
    ||  || ||||| |||||| |||||||||||||    
T  963060 ggaattattacttacagttactttgcaggattc 963092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 31547679 - 31547616
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgta 227  Q
    |||||||||| || |||||||||| |||||||||| ||||||||||||||| ||| ||||||||    
T  31547679 ggggaggcgtggcagtggcgtaggcggttgtgggcatgggaggaggagttgttaggggagtgta 31547616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 17097547 - 17097617
Alignment:
Q  2 tgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcc 72  Q
    |||||||||||  | ||||| || || || ||||||||||||||||||||||||||||||||| |||||||    
T  17097547 tgtgttaggagacgggtgggggacggagctgatactgatttttggcgtgattgttggtgtggtaatgttcc 17097617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 26846175 - 26846105
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||| | ||||| | |||||||||||||| ||||||||||||  | |||||||||||||||||||    
T  26846175 ggggaggcgtggaggtgggggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggcttt 26846105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 47537576 - 47537506
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||| |  |||| | |||||||||||||||||||||||||||  | |||||||||||||||||||    
T  47537576 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 47537506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 44888212 - 44888147
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||||| || |||||||||| |||||||||| ||||||||||| ||| ||| ||||||||||    
T  44888212 ggggaggcgtggcagtggcgtaggcggttgtgggcatgggaggaggaattgttaggggagtgtagg 44888147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 9510041 - 9509997
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||    
T  9510041 aggaggttgtgggcatgggaggaggagttggtagcggagtgtagg 9509997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 9518016 - 9517972
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||    
T  9518016 aggaggttgtgggcatgggaggaggagttggtagcggagtgtagg 9517972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 20531720 - 20531788
Alignment:
Q  2 tgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgtt 70  Q
    ||||| |||||||| ||||| || ||||| || ||| ||||||||||||| ||||||||||||||||||    
T  20531720 tgtgtcaggaggagggtgggggacggggctgaaacttatttttggcgtgactgttggtgtggtgatgtt 20531788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 48569708 - 48569771
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggt 64  Q
    ||||||||||||||| ||||| ||||| || ||||| ||||||||||  |||||||||||||||    
T  48569708 ttgtgttaggaggagggtgggggatggagctgataccgatttttggcaagattgttggtgtggt 48569771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 3141125 - 3141063
Alignment:
Q  199 ttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattc 261  Q
    ||||||||| ||||||||||||||||||||||   | ||||| |||||| |||||||||||||    
T  3141125 ttgggaggaagagttggtagaggagtgtagggaactattacttacagttactttgcaggattc 3141063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 15279873 - 15279803
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||| |  ||||||||| || |||||||||||||| |||||| ||||||||| ||||||| ||||    
T  15279873 ggggaggcgtggatgtggcgtagaagattgtgggcttgggaagaggagatggtagaggcgtgtaggtcttt 15279803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 234
Target Start/End: Complemental strand, 26010327 - 26010285
Alignment:
Q  192 tgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    ||||||||||||||||||| |||||||||||||||||| ||||    
T  26010327 tgtgggcttgggaggaggaattggtagaggagtgtaggacttt 26010285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12341924 - 12341987
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggt 64  Q
    |||||||| |||||| ||||| ||||| || |||||  |||||||||| |||||||||||||||    
T  12341924 ttgtgttaagaggagggtgggggatggagctgataccaatttttggcgagattgttggtgtggt 12341987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 15313036 - 15312981
Alignment:
Q  17 gtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcc 72  Q
    ||||| ||||| || ||||||||||||||| ||||| ||||||||||| |||||||    
T  15313036 gtgggggatggagccgatactgatttttggtgtgatagttggtgtggtaatgttcc 15312981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 48192107 - 48192040
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggc 231  Q
    |||||||||| |  |||| | |||||||||||||| ||||||||||||  | ||||||||||||||||    
T  48192107 ggggaggcgtggaagtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggc 48192040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 2756123 - 2756053
Alignment:
Q  191 ttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattc 261  Q
    ||||||| ||||||||| ||||| ||||||||||||||||   | ||||| ||| || |||||||||||||    
T  2756123 ttgtgggtttgggaggaagagtttgtagaggagtgtagggaactattacttacacttactttgcaggattc 2756053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 19890950 - 19890892
Alignment:
Q  200 tgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 258  Q
    |||||||||||  ||||||| |||||| ||| ||| ||||||||||| |||||||||||    
T  19890950 tgggaggaggacctggtagaagagtgtggggatttattactaacagtctctttgcagga 19890892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 31675211 - 31675173
Alignment:
Q  191 ttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  31675211 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 31675173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 31921209 - 31921247
Alignment:
Q  191 ttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  31921209 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 31921247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 3141306 - 3141242
Alignment:
Q  17 gtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgt 81  Q
    |||||||| || || || ||||| |||||||||||||||||||||||  |||||||  |||||||    
T  3141306 gtgggagacggtgctgagactgagttttggcgtgattgttggtgtggaaatgttccattttgtgt 3141242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 17620337 - 17620293
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||||||||| |||||| ||||||||||||  |||||||||    
T  17620337 aggaggttgtgggcgtgggagaaggagttggtagcagagtgtagg 17620293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 27924925 - 27924961
Alignment:
Q  191 ttgtgggcttgggaggaggagttggtagaggagtgta 227  Q
    ||||||||||||||||||||| || ||||||||||||    
T  27924925 ttgtgggcttgggaggaggaggtgttagaggagtgta 27924961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 47419275 - 47418932
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  47419275 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttccgcgccttttt 47419176  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  47419175 ggcttgtctgttcacaattcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgcggtggcgtaggcggttgtgggctt 47419076  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47419075 gggaggaggaggtggtagaggagtgtagggctttgttactaacaatttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 47418976  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  47418975 tgggtattcagtacgtggagtctatgatatgctgacatcacagg 47418932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 23642260 - 23642603
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||||    
T  23642260 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgccttttt 23642359  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | |||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  23642360 gacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggctt 23642459  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | |||    
T  23642460 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatga 23642559  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  23642560 tgggtattctgtacgtggagtctatgacatgctgacatcacagg 23642603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 340
Target Start/End: Complemental strand, 15740686 - 15740353
Alignment:
Q  7 taggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgcctttttggcttg 106  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| || |||||||| || ||||  ||||||  ||| ||||||| ||||    
T  15740686 taggaggagggtgggagatggtgcagatactgatttttggcgtgatcgttggtgcggagatgttccactgtgtgcccggtttgggcgtctttttgacttg 15740587  T
Q  107 tctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttgggagg 206  Q
      ||||||||| ||| |||| ||||||||||| ||| || ||||||| |||||||| ||||||||||||| ||||| |||| ||||||||||||||||||    
T  15740586 aatgttcacaaatcaatctctgttaggaatatattcttgttgggggtagacgtgggaggggaggcgttgcagtggcataggcggttgtgggcttgggagg 15740487  T
Q  207 aggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgatgggta 306  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  ||| |||||||| |||||||||||||| | || ||||||    
T  15740486 aggagttggtagaggagtgtagggctttattactaacagtttctttgcaggaatcagtgacagacagatggctttggttacctaatcatgatggtgggta 15740387  T
Q  307 ttcagtacgtggagtctatgacatgctgacatca 340  Q
    ||| ||||||||||||||||| ||| ||||||||    
T  15740386 ttctgtacgtggagtctatgatatgttgacatca 15740353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 342
Target Start/End: Complemental strand, 19755737 - 19755397
Alignment:
Q  2 tgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgcctttttg 101  Q
    |||||||||||||| ||||||||||| ||||| || ||||||||||||||| ||||||| || |||||||| || ||||  ||||||  |||||||||||    
T  19755737 tgtgttaggaggagggtgggagatggtgcagacaccgatttttggcgtgatcgttggtgcggagatgttccactgtgtgaccggtttaggcgcctttttg 19755638  T
Q  102 gcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttg 201  Q
     ||||  |||| |||| ||| | ||| |||||||||||||| || |||||||||| ||||| |||||||||||||||||||||||| ||||||||||||     
T  19755637 acttgaatgttaacaaatcaatttcatttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggctta 19755538  T
Q  202 ggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgat 301  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||  ||| |||||||| |||||||||||||| |  | |    
T  19755537 ggaggaggagttggtagaggagtgtagggttttattactaatagtttctttgcaggaatcagtgacagacagatggctttggttacctaatcaggagggt 19755438  T
Q  302 gggtattcagtacgtggagtctatgacatgctgacatcaca 342  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  19755437 gggtattctgtacgtggggtctatgacatgctgacatcaca 19755397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 2 - 342
Target Start/End: Original strand, 19784069 - 19784409
Alignment:
Q  2 tgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgcctttttg 101  Q
    |||||||||||||| ||||||||||| ||||| || ||||||||||||||| ||||||| || |||||||| || ||||  ||||||  |||||||||||    
T  19784069 tgtgttaggaggagggtgggagatggtgcagacaccgatttttggcgtgatcgttggtgcggagatgttccactgtgtgaccggtttaggcgcctttttg 19784168  T
Q  102 gcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttg 201  Q
     ||||  |||| |||| ||| | ||| |||||||||||||| || |||||||||| ||||| |||||||||||||||||||||||| ||||||||||||     
T  19784169 acttgaatgttaacaaatcaatttcatttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggctta 19784268  T
Q  202 ggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgat 301  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||  ||| |||||||| |||||||||||||| |  | |    
T  19784269 ggaggaggagttggtagaggagtgtagggttttattactaatagtttctttgcaggaatcagtgacagacagatggctttggttacctaatcaggagggt 19784368  T
Q  302 gggtattcagtacgtggagtctatgacatgctgacatcaca 342  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  19784369 gggtattctgtacgtggggtctatgacatgctgacatcaca 19784409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 1828209 - 1828552
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||| ||||||||||| ||||| ||||| |||||||||||| ||||||| || |||| ||| || ||||  ||||||  ||| ||||||    
T  1828209 ttgtgttaggaggagggtgggagatggtgcagacactgacttttggcgtgatcgttggtgcggagatgctcccctgtgtgcccggtttgggcgtcttttt 1828308  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | ||||  | ||||||| ||  |||| ||||||||||||||| || ||||||| |||||||| |||||||||||| |||||| |||| ||||||||||||    
T  1828309 gacttgagtattcacaaatctatctctgttaggaatatgttcttgttgggggtagacgtgggaggggaggcgttgtggtggcataggcggttgtgggctt 1828408  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||   || | |||||| |||||||||||||| | ||     
T  1828409 gggaggaggagttggtagaggagtggagggctttattactaacagtttctttgcaggattcagtgactgacaaatggctttggttacctaatcatgatgg 1828508  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||| |||||||||| |||||| ||| ||||||||||||    
T  1828509 tgggtattccgtacgtggagcctatgatatgttgacatcacagg 1828552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 123 - 342
Target Start/End: Original strand, 47685686 - 47685905
Alignment:
Q  123 tctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagagga 222  Q
    |||||||||||||||||||| || |||||||||| |||||||||||||| ||| |||||||| || || |||||||||||||||||||||||||||||||    
T  47685686 tctcagttaggaatatgttcttgttgggggtggatgtgggcggggaggcattgaggtggcgtgggcggctgtgggcttgggaggaggagttggtagagga 47685785  T
Q  223 gtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgatgggtattcagtacgtggagtc 322  Q
    |||||||||||||||||||||||||||||||||||| || ||| |||| |||||||| |||||||||||||| | |||||||||||| || |||||||||    
T  47685786 gtgtagggctttgttactaacagtttctttgcaggaatcggtgatagacagatggctttggttacctaatcatgatgatgggtattctgttcgtggagtc 47685885  T
Q  323 tatgacatgctgacatcaca 342  Q
    || |||||||||||||||||    
T  47685886 tacgacatgctgacatcaca 47685905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 272 - 344
Target Start/End: Original strand, 13270831 - 13270903
Alignment:
Q  272 agatggctctggttacctaatcaagctgatgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||    
T  13270831 agatggctctggttacctaatcatgatgatgggtattctgtacgtggagtctatgacatgctgacatcacagg 13270903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 212 - 344
Target Start/End: Complemental strand, 7404177 - 7404041
Alignment:
Q  212 ttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga----tgggtat 307  Q
    ||||||||| ||||||||| ||| ||||| |||||||| ||||| || ||||||  | |||||||| | |||||||| ||||| | ||     |||||||    
T  7404177 ttggtagagaagtgtagggttttattacttacagtttccttgcaagaatcagtgacaaatagatggttatggttaccaaatcaggatgcatggtgggtat 7404078  T
Q  308 tcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    || ||||||||||||||||||||||||||||||||||    
T  7404077 tctgtacgtggagtctatgacatgctgacatcacagg 7404041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 258
Target Start/End: Original strand, 54482958 - 54483085
Alignment:
Q  131 aggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtaggg 230  Q
    ||||| |||||| || |||||||||| |  || ||||  |||| || ||||||| |  |||| ||||  ||||||||||| |||||||||||||||||||    
T  54482958 aggaacatgttcttgttgggggtggaggatggtgggggagcgtggcagtggcgtcgccggttatgggtgtgggaggaggatttggtagaggagtgtaggg 54483057  T
Q  231 ctttgttactaacagtttctttgcagga 258  Q
     ||| ||||||||||| |||||||||||    
T  54483058 gtttattactaacagtctctttgcagga 54483085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 48312565 - 48312309
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||| ||||| ||||| || ||||  ||||||||||| ||||||||||||||| |||||||  | ||||  || |||  ||| |||| |    
T  48312565 ttgtgttaggaggagggtgggggatggagctgatatcgatttttggcgagattgttggtgtggt-atgttccgttgtgtgagcgctttaggcgactttat 48312467  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | |||  |  |  | || ||| || | || ||||| |||||| || |||||||||| |  || |||| ||||| || ||||||| |  |||| | ||  |    
T  48312466 gacttagccatcaataaatcaatcacggtgaggaacatgttcttgttgggggtggaggatggtgggggggcgtggcagtggcgtcgccggttattggtgt 48312367  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 258  Q
    | |||||||| ||||||||||||||||||||||| ||||||||||| | |||||||||    
T  48312366 gtgaggaggacttggtagaggagtgtagggctttattactaacagtctatttgcagga 48312309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 2821703 - 2821766
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggt 64  Q
    ||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||||||||||||||    
T  2821703 ttgtgttaggaggagggtgggggatggagctgataccgatttttggcgagattgttggtgtggt 2821766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 54482828 - 54482891
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggt 64  Q
    ||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||||||||||||||    
T  54482828 ttgtgttaggaggagggtgggggatggagctgataccgatttttggcgagattgttggtgtggt 54482891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 20395883 - 20395834
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||||||||||||||||||||  | |||||||||||||||||||    
T  20395883 aggaggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 20395834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 42778546 - 42778479
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggc 231  Q
    |||||||||| |  |||| | |||||||||||||||||||||||||||  | ||||||||||||||||    
T  42778546 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggc 42778479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 53486785 - 53486852
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggc 231  Q
    |||||||||| |  |||| | |||||||||||||||||||||||||||  | ||||||||||||||||    
T  53486785 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggc 53486852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 2821917 - 2821963
Alignment:
Q  212 ttggtagaggagtgtagggctttgttactaacagtttctttgcagga 258  Q
    |||||||||||||||||||||||  |||||||||| |||||||||||    
T  2821917 ttggtagaggagtgtagggctttaatactaacagtctctttgcagga 2821963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 4640526 - 4640576
Alignment:
Q  179 tggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||| | ||||||||||||||||||||||| ||| ||||||||||||||    
T  4640526 tggcgtcgaaggttgtgggcttgggaggaggacttgttagaggagtgtagg 4640576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 46145956 - 46145886
Alignment:
Q  191 ttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattc 261  Q
    ||||||| ||||||||| ||||||| ||||||||||||||   | ||||| |||||| |||||||||||||    
T  46145956 ttgtgggtttgggaggaagagttggcagaggagtgtagggaactattacttacagttactttgcaggattc 46145886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 35324211 - 35324260
Alignment:
Q  178 gtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgta 227  Q
    |||||||||||| |||||||||||||||||||| ||||||| | ||||||    
T  35324211 gtggcgtaggagattgtgggcttgggaggaggatttggtagtgaagtgta 35324260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 29553594 - 29553642
Alignment:
Q  186 ggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||| |||||||| ||||||||||||||| |||||||||||||| ||||    
T  29553594 ggagattgtgggcgtgggaggaggagttgttagaggagtgtaggacttt 29553642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 49926120 - 49926168
Alignment:
Q  186 ggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||| |||||||| ||||||||||||||| ||| |||||||||||||||    
T  49926120 ggagattgtgggcgtgggaggaggagttgttagtggagtgtagggcttt 49926168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 7098937 - 7098882
Alignment:
Q  17 gtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcc 72  Q
    |||||||||||||  ||||||  |||||||| |||| |||||||||||||||||||    
T  7098937 gtgggagatggggtggatactcttttttggcatgatcgttggtgtggtgatgttcc 7098882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 11587082 - 11587125
Alignment:
Q  216 tagaggagtgtagggctttgttactaacagtttctttgcaggat 259  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||||    
T  11587082 tagaggaatgtagggctttattactgacagtttctttgcaggat 11587125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 18106388 - 18106455
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggc 231  Q
    |||||||||| |  |||| | |||||||||||||| ||||||||||||  | ||||||||||||||||    
T  18106388 ggggaggcgtggaagtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggc 18106455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 23657681 - 23657638
Alignment:
Q  186 ggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||| |||||||| ||||||||||||||| ||||||||||||||    
T  23657681 ggagattgtgggcgtgggaggaggagttgttagaggagtgtagg 23657638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 5789762 - 5789832
Alignment:
Q  2 tgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcc 72  Q
    |||||||| ||||| ||| | ||||| ||  ||| |||||||||||||||||||||||||||  |||||||    
T  5789762 tgtgttagtaggagggtgcgggatggagccaatattgatttttggcgtgattgttggtgtggaaatgttcc 5789832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 11586867 - 11586935
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgt 69  Q
    ||||||||||||||| |||   |||||  | || |||||||| |||||||| |||||||||||||||||    
T  11586867 ttgtgttaggaggagggtgaaggatggatccgaaactgatttctggcgtgactgttggtgtggtgatgt 11586935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 19647995 - 19647947
Alignment:
Q  186 ggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||| |||||||| |||||||||||| || ||| |||||||||||||||    
T  19647995 ggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttt 19647947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 28713171 - 28713215
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||| ||||||| |||||||||||||||||||  |||||||||    
T  28713171 aggaggctgtgggcgtgggaggaggagttggtagcagagtgtagg 28713215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 34322151 - 34322215
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtag 228  Q
    |||||||||| |  |||| | |||||||||||||| ||||||||||||  | |||||||||||||    
T  34322151 ggggaggcgtggaagtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtag 34322215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 46543262 - 46543222
Alignment:
Q  189 ggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||||| |||||||||||| ||||||| |||||||||    
T  46543262 ggttgtgggcgtgggaggaggagatggtagaagagtgtagg 46543222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 55725375 - 55725447
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcct 73  Q
    ||||||||||| ||| ||||||||||| ||    || ||||||||||| |||||||||||||||  |||||||    
T  55725375 ttgtgttaggatgagggtgggagatggagccacaacagatttttggcgagattgttggtgtggtagtgttcct 55725447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 105512 - 105855
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||||    
T  105512 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgccttttt 105611  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | |||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  105612 gacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggctt 105711  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | |||    
T  105712 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatga 105811  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  105812 tgggtattctgtacgtggagtctatgacatgctgacatcacagg 105855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 8300274 - 8299931
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||||    
T  8300274 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgccttttt 8300175  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| || ||||||||||||    
T  8300174 gacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggctt 8300075  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | |||    
T  8300074 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgttagacagatggctctggttacctaatcatgatga 8299975  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  8299974 tgggtattctgtacgtggagtctatgacatgctgacatcacagg 8299931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 7924857 - 7924514
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    |||||||| ||||||||||||| |||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||  ||||||||||    
T  7924857 ttgtgttacgaggagagtgggacatggggcacatactgattttgggcgtgattgttggtgtggagatgtccctctttgtgtccggtttatgcgccttttt 7924758  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | |||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  7924757 gacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggctt 7924658  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | |||    
T  7924657 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatga 7924558  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  7924557 tgggtattctgtacgtggagtctatgacatgctgacatcacagg 7924514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 11 - 344
Target Start/End: Complemental strand, 13396849 - 13396516
Alignment:
Q  11 aggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgcctttttggcttgtctg 110  Q
    ||||| ||||||||||| ||||| | |||||||||||||||| ||||||| || |||||||| || ||||  ||||||  ||||||||||| ||||  ||    
T  13396849 aggagggtgggagatggtgcagacattgatttttggcgtgatcgttggtgcggagatgttccactgtgtgaccggtttaggcgcctttttgacttgaatg 13396750  T
Q  111 ttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggagga 210  Q
    || |||| ||| | |||||||||||||||||| || |||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  13396749 ttaacaaatcaatttcagttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttgggaggagga 13396650  T
Q  211 gttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgatgggtattca 310  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||||||| ||||||  ||| |||||||| |||||||||||||| |  | |||||||||     
T  13396649 gttggtagaggagtgtagggttttattactaacaatttctttgcaggaatcagtgacagacagatggctttggttacctaatcaggagggtgggtattct 13396550  T
Q  311 gtacgtggagtctatgacatgctgacatcacagg 344  Q
    |||||||| |||||||||||||||||||||||||    
T  13396549 gtacgtggggtctatgacatgctgacatcacagg 13396516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 123 - 344
Target Start/End: Complemental strand, 172452 - 172231
Alignment:
Q  123 tctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagagga 222  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| |||||||||| ||||||||| |||||||||||||    
T  172452 tctcagttaggaatatgttcctgctgagggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcctgggaggagaagttggtagagga 172353  T
Q  223 gtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgatgggtattcagtacgtggagtc 322  Q
    |||||||||||||||||||| ||||||||||||||| |||||| |||| |||||||| |||||||||||| | | |||||||||||| ||||||||||||    
T  172352 gtgtagggctttgttactaatagtttctttgcaggaatcagtgatagacagatggctatggttacctaataatgatgatgggtattctgtacgtggagtc 172253  T
Q  323 tatgacatgctgacatcacagg 344  Q
    ||||||||||||||||||||||    
T  172252 tatgacatgctgacatcacagg 172231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 2 - 344
Target Start/End: Original strand, 41665038 - 41665381
Alignment:
Q  2 tgtgttaggaggagagtgggagatggggcagatactgatttt-tggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    |||||||||||||| ||||||||||| ||||| ||||||||| ||||||||| |||||||  | ||||||||| | ||||  ||||||  ||||||||||    
T  41665038 tgtgttaggaggagggtgggagatggtgcagacactgattttttggcgtgatcgttggtgcagagatgttcctttgtgtgaccggtttaggcgccttttt 41665137  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | ||||  |||| |||  ||| | |||||||||||||||||| || |||||||||| ||||| ||||||| |||||||||||||||| ||||||||||||    
T  41665138 gacttgaatgttaacagatcaatttcagttaggaatatgttcttgttgggggtggatgtgggtggggaggtgttgcggtggcgtaggcggttgtgggctt 41665237  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||| ||||||  ||| ||||| || |||||||||||| | |  |     
T  41665238 gggaggaggagttggtagaggagtgtagggttttattactaacagtttctttacaggaatcagtgacagacagatgactttggttacctaattaggaggg 41665337  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||| ||| |||| |||||||||||||||||||||||||    
T  41665338 tgggtattctgtatgtggggtctatgacatgctgacatcacagg 41665381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 32267033 - 32266707
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||  ||||||||||| || |||||||||||||||||  |||||||||| || |||||||| || |||| ||||||   ||| ||||||    
T  32267033 ttgtgttaggaggaaggtgggagatggtgcggatactgatttttggcggtattgttggtgcggagatgttccactgtgtgctcggttagagcgtcttttt 32266934  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | ||||  ||||||||| ||| |||| ||||| ||  | ||| || | |||||||| ||||| ||||||||||||||||||||||||||||||||||| |    
T  32266933 gacttgagtgttcacaaatcaatctccgttagaaactttttcttgttcggggtggatgtgggtggggaggcgttgcggtggcgtaggaggttgtgggcct 32266834  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| ||| |||||||| ||| |||||||||| | |||    
T  32266833 gggaggaggagttggtagaggagtgtagggctttattgctaacagtttctttgcaggaatcagtgtcagacagatggctttgggtacctaatcatgatga 32266734  T
Q  301 tgggtattcagtacgtggagtctatga 327  Q
    ||||||||| |||||||||| ||||||    
T  32266733 tgggtattctgtacgtggagcctatga 32266707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 9923072 - 9922729
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||| |||||||| || ||||| || ||||||||||| |||||||||||||| ||||||||  | ||||   |||||   ||||||| |    
T  9923072 ttgtgttaggaggagggtgggagacggtgcagagacagatttttggcgggattgttggtgtggagatgttccattgtgtgaatggtttagtcgcctttat 9922973  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | |||| ||||  ||||  || |||| |||||||| |||||| || |||||||||| || || |||||||||||| ||||||||||| ||||||||||||    
T  9922972 gacttgactgtgaacaaaccaatctctgttaggaacatgttcttgttgggggtggatgtcggtggggaggcgttgaggtggcgtaggcggttgtgggctt 9922873  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||| ||||||  |||||||||| | |||||||| | ||| | |||    
T  9922872 gggaggaagagttggtagaggagtctagggctttattactaacagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaggatga 9922773  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||| ||| || ||||||| |||||||||||||||||||||||    
T  9922772 tgggttttccgttcgtggagcctatgacatgctgacatcacagg 9922729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 13879156 - 13879413
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||| ||||| ||||  || ||||||||||||||||| |||||||||||||||  ||||||  | ||||  || |||  ||| |||| |    
T  13879156 ttgtgttaggaggagggtgggggatgaagctgatactgatttttggcgagattgttggtgtggtagtgttccgttgtgtgagcgctttaggcgtctttat 13879255  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | |||  || |  | || ||| || | || ||||| |||||| || | |||||||| |  || ||||  |||| || ||||||| |  |||| ||||  |    
T  13879256 gacttagctatcgataaatcaatcacggtgaggaacatgttcttgttcggggtggaggatggtgggggagcgtggcagtggcgtcgccggttatgggtgt 13879355  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 258  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  13879356 gggaggaggacttggtagaggagtgtagggctttattactaacagtctctttgcagga 13879413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 25090858 - 25090601
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||  ||||||  | ||||  || |||  ||| ||||||    
T  25090858 ttgtgttaggaggagggtgggggatggagcagatactgatttttggcgagattgttggtgtggtagtgttccgttgtgtgagcgctttaggcgacttttt 25090759  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | |||  |     | || ||| || | || ||||| |||||| || |||||||||| |  || ||||  |||| || ||||||| |  | || | ||  |    
T  25090758 gacttaaccaccaataaatcaatcacggtgaggaacatgttcttgttgggggtggaggatggtgggggagcgtggcagtggcgtcgccgtttattggtgt 25090659  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 258  Q
    |||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  25090658 gggaggagaaattggtagaggagtgtagggctttattactaacagtctctttgcagga 25090601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17699951 - 17699888
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggt 64  Q
    ||||||||||||||| ||||| ||||| || ||||||||||||||||| |||||||||||||||    
T  17699951 ttgtgttaggaggagggtgggggatggagccgatactgatttttggcgagattgttggtgtggt 17699888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 20824770 - 20824707
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggt 64  Q
    ||||||||||||||| ||||| ||||| || ||||| |||||||||||||||||||||||||||    
T  20824770 ttgtgttaggaggagggtgggggatggagctgataccgatttttggcgtgattgttggtgtggt 20824707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 12134610 - 12134566
Alignment:
Q  190 gttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||    
T  12134610 gttgtgggcgtgggaggaggacttggtagaggagtgtagggcttt 12134566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42177218 - 42177281
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggt 64  Q
    ||||||||||||||| ||||| |||||||| || |  ||||||||||| |||||||||||||||    
T  42177218 ttgtgttaggaggagggtgggggatggggccgaaatcgatttttggcgagattgttggtgtggt 42177281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 17659139 - 17659073
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtaggg 230  Q
    |||||||||| |  |||| | |||||||||||||||||||||||||||  | |||||||||||||||    
T  17659139 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtaggg 17659073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 25193376 - 25193332
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||    
T  25193376 aggaggttgtgggcgcgggaggaggagttggtggaggagtgtagg 25193332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 15439463 - 15439412
Alignment:
Q  177 ggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtag 228  Q
    ||||||| ||||| |||||||| ||||||||||||||||| | |||||||||    
T  15439463 ggtggcggaggagattgtgggcgtgggaggaggagttggttgtggagtgtag 15439412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 228
Target Start/End: Complemental strand, 15530767 - 15530716
Alignment:
Q  177 ggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtag 228  Q
    ||||||| ||||| |||||||| ||||||||||||||||| | |||||||||    
T  15530767 ggtggcggaggagattgtgggcgtgggaggaggagttggttgtggagtgtag 15530716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 23680470 - 23680400
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||| |  |||| | ||| ||||||||| |||||||||||||  | |||||||||||||||||||    
T  23680470 ggggaggcgtggaagtggaggagggggttgtgggtttgggaggaggaggagttagaggagtgtagggcttt 23680400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 13200337 - 13200296
Alignment:
Q  200 tgggaggaggagttggtagaggagtgtagggctttgttacta 241  Q
    |||||||||||||||||||||||||||| || ||| ||||||    
T  13200337 tgggaggaggagttggtagaggagtgtatggatttattacta 13200296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 28993061 - 28993126
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||| | || ||||||| || |||||||| ||||||||||||||||| ||| | ||||||||    
T  28993061 ggggaggcttggcagtggcgtcggcggttgtggacttgggaggaggagttgttagggaagtgtagg 28993126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 4937797 - 4938140
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||||    
T  4937797 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgccttttt 4937896  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | |||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  4937897 gacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggctt 4937996  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | |||    
T  4937997 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatga 4938096  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  4938097 tgggtattctgtacgtggagtctatgacatgctgacatcacagg 4938140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 11276917 - 11277264
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgc----ct 96  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||||| ||||| ||||||| || |||||||| || ||||  ||||||  |||     ||    
T  11276917 ttgtgttaggaggagggtgggagatggtgcagataccgatttttggtgtgatcgttggtgcggagatgttccactgtgtgcccggtttgggcgtgcgtct 11277016  T
Q  97 ttttggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgg 196  Q
    ||||| ||||  |||  |||| ||| |||||||||||||||||||| || |||||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  11277017 ttttgacttgaatgtagacaaatcaatctcagttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggcggttgtgg 11277116  T
Q  197 gcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaag 296  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||  ||| |||||||| ||| |||||||||| |    
T  11277117 gcttgggaggaggagttggtagaggagtgtagggctttattgctaacagtttctttgcaggaatcagtgacagacagatggctttgggtacctaatcatg 11277216  T
Q  297 ctgatgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
     ||||||||| || ||||||||||||||||| ||||||||||||||||    
T  11277217 atgatgggtactctgtacgtggagtctatgatatgctgacatcacagg 11277264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 2 - 344
Target Start/End: Complemental strand, 47877453 - 47877111
Alignment:
Q  2 tgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgcctttttg 101  Q
    |||||||||| ||| |||||||| || ||| | || ||||||||||||||| ||||||| || |||||||| || || |  || |||   ||||||| ||    
T  47877453 tgtgttaggatgagggtgggagacggtgcataaacagatttttggcgtgatcgttggtgcggagatgttccactgtgcgaccgttttagtcgcctttatg 47877354  T
Q  102 gcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttg 201  Q
     |||| ||||| |||| ||| |||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  47877353 acttgactgttaacaaatcaatctcagttaggaatatgttcttgttgggggtggacgtgggtggggaggcgttgcggtggcgtaggcggttgtgggcttg 47877254  T
Q  202 ggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgat 301  Q
    |||||| |||||||||||||||||| ||| ||| |||||||||||||| |||||||| ||||||  ||| ||||| || |||||||||||||| | || |    
T  47877253 ggaggaagagttggtagaggagtgtggggttttattactaacagtttccttgcaggaatcagtgacagacagatgactttggttacctaatcaggatggt 47877154  T
Q  302 gggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    |||||||  ||||||||||| ||||||||||||||||||||||    
T  47877153 gggtattatgtacgtggagtttatgacatgctgacatcacagg 47877111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 29968445 - 29968103
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||  ||||||||||| || ||||| |||||||||||  |||||||||| || ||||||||  | |||| |||||||  | | ||||||    
T  29968445 ttgtgttaggaggaaggtgggagatggtgcggataccgatttttggcggaattgttggtgcggagatgttccattgtgtgctcggtttgggagtcttttt 29968346  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | ||||  ||||||||| ||| |||| ||||| ||  | ||| || |||||||||| ||||| ||||||||||||||||||||||||||||| |||||||    
T  29968345 gacttgagtgttcacaaatcaatctccgttagaaactttttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggaggttatgggctt 29968246  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    | |||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||  ||| |||||||| ||| |||||||||| | |||    
T  29968245 gagaggaggaattggtagaggagtgtagggctttattgctaacagtttctttgcaggaatcagtgacagacagatggctttgggtacctaatcatgatga 29968146  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    | |||| || |||||||||| |||||| ||||||||||||||||    
T  29968145 t-ggtactctgtacgtggagcctatgatatgctgacatcacagg 29968103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 2 - 344
Target Start/End: Original strand, 235108 - 235449
Alignment:
Q  2 tgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgcctttttg 101  Q
    |||||||||||||| ||||||||  |  || | || ||||||||||||||| ||||||| || |||||||| || ||||  || |||   ||||||| ||    
T  235108 tgtgttaggaggagggtgggagacagtacaaaaacagatttttggcgtgatcgttggtgcggagatgttccactgtgtgaccgttttagtcgcctttatg 235207  T
Q  102 gcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttg 201  Q
     |||| ||||| |||| ||| ||||||||| |||||||||| || ||||| |||||||||| |||||||||||||||||||||  | | |||||||||||    
T  235208 acttggctgttaacaaatcaatctcagttatgaatatgttcttgttgggg-tggacgtgggtggggaggcgttgcggtggcgtcagcgattgtgggcttg 235306  T
Q  202 ggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgat 301  Q
    ||||||  ||||||||||||||||||||| ||| |||||||||||||| || ||||| ||||||  ||||||||| || |||||||| ||||| | || |    
T  235307 ggaggaaaagttggtagaggagtgtagggttttattactaacagtttccttacaggaatcagtgacagatagatgactttggttaccaaatcaggatggt 235406  T
Q  302 gggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  235407 gggtattctgtacgtggagtctatgacatgttgacatcacagg 235449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 17721106 - 17720763
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||| |||||||| || ||||| || ||||||||| | |||||||||||||| |||||| |  | ||||  ||||||   ||||||| |    
T  17721106 ttgtgttaggaggagggtgggagacggtgcagagacagatttttggtgggattgttggtgtggagatgtttcattgtgtgaacggtttagtcgcctttat 17721007  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | |||| ||||  ||||   | |||| |||||||| ||| || || |||||||||| || || |||||||||||| ||||||||||| ||||||||||||    
T  17721006 gacttgactgtgaacaaactaatctctgttaggaacatgatcttgttgggggtggatgtcggtggggaggcgttgaggtggcgtaggcggttgtgggctt 17720907  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    ||||||| |||||||||||||||| || |||||| |||||||||||||| |||||||| ||||||  |||||||||| | |||||||| | ||| | |||    
T  17720906 gggaggaagagttggtagaggagtttanggctttattactaacagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaggatga 17720807  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||| || ||||||| |||||||||||||||||||||||    
T  17720806 tgggtattccgttcgtggagcctatgacatgctgacatcacagg 17720763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 91 - 344
Target Start/End: Complemental strand, 37919925 - 37919672
Alignment:
Q  91 gcgcctttttggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggagg 190  Q
    ||||||||||| ||||  |||| | || ||| | |||||||| ||||||||| || |||||||||| ||||| |||| || |||||||||||||||| ||    
T  37919925 gcgcctttttgacttgaatgttaaaaaatcaatttcagttagaaatatgttcttgttgggggtggatgtgggtgggggggtgttgcggtggcgtaggcgg 37919826  T
Q  191 ttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttaccta 290  Q
    |||||||||||||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||||| ||||||  | | | |||||| || |||||||    
T  37919825 ttgtgggcttgggaggagaagttggtagaggagtgtagagttttattactaacagtttctttgcaggaatcagtgacaaacatatggctttgattaccta 37919726  T
Q  291 atcaagctgatgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    | || |  | ||||||||| || |||||||| ||||||||||||||||||||||    
T  37919725 aacaggagggtgggtattctgtgcgtggagtatatgacatgctgacatcacagg 37919672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 22819549 - 22819614
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||||| ||  |||||||||||||||||||| ||||||||||||||| ||| ||||||||||    
T  22819549 ggggaggcgtggcaatggcgtaggaggttgtgggcctgggaggaggagttgttaggggagtgtagg 22819614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 34232007 - 34231940
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggc 231  Q
    ||||||||||||  |||| |||||||||||||||| ||||||||||||  | ||||||||||||||||    
T  34232007 ggggaggcgttgaagtggagtaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggc 34231940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 17055837 - 17055772
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||||| || |||||||||| |||||||||| || |||||||||||| ||| ||||||||||    
T  17055837 ggggaggcgtggcagtggcgtaggcggttgtgggcatgagaggaggagttgttaggggagtgtagg 17055772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 4077583 - 4077513
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||| |  |||| | ||||||||||||||||||||||| |||  | |||||||||||||||||||    
T  4077583 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaagaggagttagaggagtgtagggcttt 4077513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 28173829 - 28173873
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    ||||| |||||||| ||||||||||||||||||| ||||||||||    
T  28173829 aggagattgtgggcgtgggaggaggagttggtagcggagtgtagg 28173873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 36363805 - 36363737
Alignment:
Q  191 ttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggat 259  Q
    |||||||  |||||||| ||| || |||||||||||||||| || ||||| || |||||||||||||||    
T  36363805 ttgtgggtgtgggaggaagagctgctagaggagtgtagggcattattacttactgtttctttgcaggat 36363737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 11339033 - 11338990
Alignment:
Q  186 ggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    ||||||||||||| |||||||||||  |||||||||||||||||    
T  11339033 ggaggttgtgggcgtgggaggaggaaatggtagaggagtgtagg 11338990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 223
Target Start/End: Original strand, 27854298 - 27854333
Alignment:
Q  188 aggttgtgggcttgggaggaggagttggtagaggag 223  Q
    |||||||||||||||||||| |||||||||||||||    
T  27854298 aggttgtgggcttgggaggaagagttggtagaggag 27854333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 37255229 - 37255170
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtg 60  Q
    ||||||||||||||| ||||| ||||| || || || ||||||||||| |||||||||||    
T  37255229 ttgtgttaggaggagggtgggggatggagccgaaaccgatttttggcgagattgttggtg 37255170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 27218952 - 27219022
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||| |  |||||||||  | ||||||| |||||| |||||| ||||||||||||||||| ||||    
T  27218952 ggggaggcgtgggtgtggcgtagacgattgtgggtttgggaagaggagatggtagaggagtgtaggtcttt 27219022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 37255030 - 37254972
Alignment:
Q  200 tgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 258  Q
    ||||||||||| |||||||| |||||||||| ||| |||||||||   |||||||||||    
T  37255030 tgggaggaggacttggtagaagagtgtagggatttattactaacaaactctttgcagga 37254972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 45943123 - 45943089
Alignment:
Q  200 tgggaggaggagttggtagaggagtgtagggcttt 234  Q
    ||||||||||||||| |||||||||||||||||||    
T  45943123 tgggaggaggagttgctagaggagtgtagggcttt 45943089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 7458524 - 7458573
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||||||| ||||||||||||    |||||||||||||||||||    
T  7458524 aggaggttgtgggcatgggaggaggaggaattagaggagtgtagggcttt 7458573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 27941348 - 27941389
Alignment:
Q  186 ggaggttgtgggcttgggaggaggagttggtagaggagtgta 227  Q
    |||| |||||||| ||||||||||||||| ||||||||||||    
T  27941348 ggagattgtgggcgtgggaggaggagttgttagaggagtgta 27941389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 25924356 - 25924312
Alignment:
Q  186 ggaggttgtgggcttgggaggaggagttggtagaggagtgtaggg 230  Q
    |||| |||||||| ||||||||||||||| ||| |||||||||||    
T  25924356 ggagtttgtgggcgtgggaggaggagttgttagtggagtgtaggg 25924312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 45992862 - 45992814
Alignment:
Q  186 ggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||| |||||||| |||||||||||| || ||| |||||||||||||||    
T  45992862 ggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttt 45992814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 6051074 - 6050731
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||||    
T  6051074 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgccttttt 6050975  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | |||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  6050974 gacttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggctt 6050875  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | |||    
T  6050874 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatga 6050775  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  6050774 tgggtattctgtacgtggagtctatgacatgctgacatcacagg 6050731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 35541520 - 35541177
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||||    
T  35541520 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgccttttt 35541421  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| || ||||||||||||    
T  35541420 gacttgtctgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtcggcggttgtgggctt 35541321  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| | |||    
T  35541320 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttttttgcaggaatcagtgttagacagatggctctggttacctaatcatgatga 35541221  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||| || |||||||||||||||||||||||||||||||    
T  35541220 tgggtattctgttcgtggagtctatgacatgctgacatcacagg 35541177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 2 - 344
Target Start/End: Original strand, 11908775 - 11909117
Alignment:
Q  2 tgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgcctttttg 101  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| | ||||| ||||||  |||||||||||    
T  11908775 tgtgttaggaggagggtgggagatggtgcagatactgatttttgacgtgattgttggtgtggagatgttcctttgtgtgtccggtttaggcgcctttttg 11908874  T
Q  102 gcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttg 201  Q
     |||| |||||||||| ||| |||||||||||||||||||| || |||||||||| |||||||||||||||||| ||||||||||| |||||||||||||    
T  11908875 acttgactgttcacaaatcaatctcagttaggaatatgttcatgatgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttg 11908974  T
Q  202 ggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgat 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| | ||||    
T  11908975 ggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgat 11909074  T
Q  302 gggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  11909075 gggtattctatacgtggagtctatgacatgctgacatcacagg 11909117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 254 - 344
Target Start/End: Complemental strand, 51052698 - 51052608
Alignment:
Q  254 caggattcagtgttagatagatggctctggttacctaatcaagctgatgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||| |||||| |||| ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||    
T  51052698 caggaatcagtgatagacagatggctctggttacctaatcatgatgatgggtattctgtacgtggagtctatgacatgctgacatcacagg 51052608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 47622746 - 47622817
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcc 72  Q
    ||||||||||||||| ||||| |||||  | ||||||||||||||||| |||||||||||||||||||||||    
T  47622746 ttgtgttaggaggagggtgggggatggttccgatactgatttttggcgggattgttggtgtggtgatgttcc 47622817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 344
Target Start/End: Original strand, 47622934 - 47623089
Alignment:
Q  189 ggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacc 288  Q
    |||| ||||| |||||||||||  ||||||||||||||| |||||| ||||| |||| || ||||||||| ||  ||| |||||| ||| | |||||| |    
T  47622934 ggttatgggcgtgggaggaggacctggtagaggagtgtaaggctttattactgacagcttttttgcaggaatctttgtcagataggtggttgtggttatc 47623033  T
Q  289 taatcaagctgatgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
      |||| |  |  ||||||||||| | ||| || ||||||||||||||||||||||    
T  47623034 ggatcagggaggcgggtattcagtccatggggtgtatgacatgctgacatcacagg 47623089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 261
Target Start/End: Complemental strand, 2491556 - 2491423
Alignment:
Q  128 gttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgta 227  Q
    |||||| ||||||||| | |||| ||||| |  || |||| ||||| || ||||||| |  | ||||||||||||||||| |||||||||||||||||||    
T  2491556 gttaggtatatgttccagttgggtgtggaggctggtgggggggcgtggcagtggcgtcgtcgtttgtgggcttgggaggaagagttggtagaggagtgta 2491457  T
Q  228 gggctttgttactaacagtttctttgcaggattc 261  Q
    |||   | ||||| |||||| ||||||| |||||    
T  2491456 gggtactattacttacagttactttgcaagattc 2491423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 22191613 - 22191678
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||| ||||| || |||||||||| |||||||||| ||||||||||||||||||| ||||||||||    
T  22191613 ggggtggcgtggcagtggcgtaggcggttgtgggcatgggaggaggagttggtaggggagtgtagg 22191678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 43388836 - 43388773
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggt 64  Q
    ||||||||||||||| ||||| ||||| || ||| ||||||||||||| |||||||||||||||    
T  43388836 ttgtgttaggaggagggtgggggatggagctgatgctgatttttggcgagattgttggtgtggt 43388773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 21405146 - 21405081
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||||| || |||||||||| |||||||||| || |||||||||||| ||| ||||||||||    
T  21405146 ggggaggcgtggcagtggcgtaggcggttgtgggcatgagaggaggagttgttaggggagtgtagg 21405081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 30110757 - 30110826
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggctt 233  Q
    |||||||||| |  |||| | |||||||||||||||||||||||||||  | ||||||||||||||||||    
T  30110757 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggctt 30110826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 17708287 - 17708220
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggc 231  Q
    |||||||||| |  |||| | |||||||||||||||||||||||||||  | ||||||||||||||||    
T  17708287 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggc 17708220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 3074043 - 3073993
Alignment:
Q  179 tggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    ||||||||| |||||||||| ||||||||||||||| ||| ||||||||||    
T  3074043 tggcgtaggcggttgtgggcctgggaggaggagttgttaggggagtgtagg 3073993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 47106534 - 47106583
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||| ||||||||||||||||||  | |||||||||||||||||||    
T  47106534 aggaggttatgggcttgggaggaggaggagttagaggagtgtagggcttt 47106583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 52691759 - 52691715
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||    
T  52691759 aggaggttatgggcgtgggaggaggagttggtggaggagtgtagg 52691715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 26805266 - 26805204
Alignment:
Q  167 gaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    ||||||| | ||||| | ||||| |||||||| |||||||||||  |||||||||||||||||    
T  26805266 gaggcgtggaggtggaggaggagattgtgggcgtgggaggaggacatggtagaggagtgtagg 26805204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 43944291 - 43944353
Alignment:
Q  149 ggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggag 211  Q
    |||||||| | ||| |||||||| | || |||||||||| ||||||||| |||||||||||||    
T  43944291 ggggtggaggagggtggggaggcttggcagtggcgtaggcggttgtgggattgggaggaggag 43944353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 10711014 - 10711063
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||||||||||||| ||||||  | |||||||||||||| ||||    
T  10711014 aggaggttgtgggcttgggaagaggaggagttagaggagtgtaggacttt 10711063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 20987461 - 20987417
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    ||||| |||||||| ||||||||||||||||| | ||||||||||    
T  20987461 aggagattgtgggcgtgggaggaggagttggtggtggagtgtagg 20987417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 25504847 - 25504895
Alignment:
Q  186 ggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||| |||||||| |||||||||||| || ||| |||||||||||||||    
T  25504847 ggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttt 25504895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 28358185 - 28358133
Alignment:
Q  177 ggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||||| || |||||||| ||||| || ||| |||||||||||||||||    
T  28358185 ggtggcgtagaagattgtgggcgtgggaagaagagatggtagaggagtgtagg 28358133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 52470035 - 52470079
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||||||||| ||||||||||||  ||||| ||||||||||    
T  52470035 aggaggttgtgggcgtgggaggaggagaaggtagtggagtgtagg 52470079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 42514191 - 42513848
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||||    
T  42514191 ttgtgttaggaggagagtgggagatggggcagatactgatttctggcgtgattgttggtgtggagatgttcctctttgtgtccggtttaggcgccttttt 42514092  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | |||| |||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||    
T  42514091 gacttgactgttcacaaatcaatctcagttaggaatatgttccttctgggggtggatgtggggggggaggcgttgaggtggcgtaggcggttgtgggctt 42513992  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | |||    
T  42513991 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggactcagtgttagacagatggctctggttacctaatcatgatga 42513892  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  42513891 tgggtattctgtacgtggagtctatgacatgctgacatcacagg 42513848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 2 - 344
Target Start/End: Original strand, 30731984 - 30732326
Alignment:
Q  2 tgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgcctttttg 101  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||   ||||||||||    
T  30731984 tgtgttaggaggagggtgggagatggtgcagatactgatttttggcgtgattgttggtgtggagatgttcctctgtgtgtccggtttagacgcctttttg 30732083  T
Q  102 gcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttg 201  Q
     |||| ||| |||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||    
T  30732084 acttgactgctcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttg 30732183  T
Q  202 ggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgat 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| | ||||    
T  30732184 ggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgat 30732283  T
Q  302 gggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  30732284 gggtattctgtacgtggagtctatgacatgctgacatcacagg 30732326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 2 - 344
Target Start/End: Complemental strand, 12825669 - 12825327
Alignment:
Q  2 tgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgcctttttg 101  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| | ||||| ||||||  |||||||||||    
T  12825669 tgtgttaggaggagggtgggagatggtgcagatactgatttttggcgtgattgttggagtggagatgttcctttgtgtgtccggtttaggcgcctttttg 12825570  T
Q  102 gcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttg 201  Q
     |||| |||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||    
T  12825569 acttgactgttcacaaatcaatctcagttaggaatatgttcctgctgggggtggatgtgggcggggaggcgttgaggtggcgtaggcggttgtgggcttg 12825470  T
Q  202 ggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgat 301  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||| | ||||    
T  12825469 ggatgaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctctggttacctaatcatgatgat 12825370  T
Q  302 gggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    |||||||| | ||||||||||||||||||||||||||||||||    
T  12825369 gggtattctgcacgtggagtctatgacatgctgacatcacagg 12825327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 27116842 - 27117173
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||||||||            | ||||||||| | ||||| ||||||  ||||||||||    
T  27116842 ttgtgttaggaggagggtgggagatggtgtagatactgatttttggcgtg------------gagatgttcctttgtgtgtccggtttaggcgccttttt 27116929  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | ||||||||||||  | ||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||| |||||||||| |    
T  27116930 gacttgtctgttcatcaatcagtctcagttaggaatatgttcctgctgggggtggatgtgggcggagaggcgttgaggtggcgtaggcggttgtgggcct 27117029  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||| | | |||    
T  27117030 gggaggaggggttggtagaggagtgtagggctttgttactaacagtttctttgcaggaatcagtgatagacagatggctatggttacctaataatgatga 27117129  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  27117130 tgggtattctgtacgtggagtctatgacatgctgacatcacagg 27117173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 23238854 - 23238512
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||| |||||||||||  | ||||| ||||||||||||||| ||||||| || |||||||| || ||||  ||||||  ||| ||||||    
T  23238854 ttgtgttaggaggagggtgggagatggtacggataccgatttttggcgtgatcgttggtgcggagatgttccactgtgtgcccggtttgggcgtcttttt 23238755  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | ||||  ||| ||||| ||| |||| ||||||||||||||| || | ||| ||||  |||| |||||||||||||||||||||||||||||||||||      
T  23238754 gacttgagtgtacacaaatcaatctccgttaggaatatgttcttgttaggg-tggatttgggtggggaggcgttgcggtggcgtaggaggttgtgggcca 23238656  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||  ||| |||||||| ||| |||||||||| | |||    
T  23238655 gggaggaggagttggtagaggagtgtagggctttattgctaacagtttctttgcaggaatcagtgacagacagatggctttgggtacctaatcatgatga 23238556  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    |||||| || ||||||||||||||||| ||||| ||||||||||    
T  23238555 tgggtactctgtacgtggagtctatgatatgctaacatcacagg 23238512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 31641982 - 31641639
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||| |||||||| || |||||||| ||||||||||| ||||||||||||||  |||||||| | ||||  ||||||   ||||||| |    
T  31641982 ttgtgttaggaggagggtgggagacggtgcagatacagatttttggcgggattgttggtgtggaaatgttcctttgtgtgaccggtttagtcgcctttat 31641883  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | |||| ||||  ||||  || |||| |||||||| |||||| || |||||||||| || || |||||||||||| ||||||||||| ||||||||||||    
T  31641882 gacttgactgtgaacaaaccaatctctgttaggaacatgttcttgatgggggtggaggtcggtggggaggcgttgaggtggcgtaggcggttgtgggctt 31641783  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||| ||||||  |||||||||| | |||||||| | ||| | |||    
T  31641782 gggaggaagagttggtagaggagtttagggctttattactaacagtttcattgcaggaatcagtgacagatagatggatttggttaccaactcaggatga 31641683  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||| ||||| || |||||||  ||||||||||||||||||||||    
T  31641682 tggatattccgttcgtggagcatatgacatgctgacatcacagg 31641639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 35983460 - 35983803
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||| |||||||| || ||||| || |||||||||||||||||| ||||||| ||||||||| | ||||  || |||   ||||| | |    
T  35983460 ttgtgttaggaggagggtgggagacggtgcagaaacggatttttggcgtgattgtaggtgtggagatgttcctatgtgtgaccgttttagtcgcctatat 35983559  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | |||| ||||  ||||  || |||| ||||||||||||||| || |||||||||| | ||| |||||||||||| ||||||||||| ||||||||||||    
T  35983560 gacttgactgtgaacaaaccaatctctgttaggaatatgttcttgttgggggtggatgagggtggggaggcgttgaggtggcgtaggcggttgtgggctt 35983659  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
     ||||||||||||||||||||||| ||||||||| |||||||||||||| || ||||| ||||||  |||||||| ||| |||||||| ||||| | ||     
T  35983660 aggaggaggagttggtagaggagtttagggctttattactaacagtttcattacaggaatcagtgacagatagatagctttggttaccaaatcaggatgg 35983759  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    |||||| || |||||||||| |||||||||||||||||||||||    
T  35983760 tgggtactctgtacgtggagcctatgacatgctgacatcacagg 35983803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 28535344 - 28535687
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||| |||||||| || | ||| || ||||||||||| |||||||||||||| ||||||||| | ||||  || |||   ||||||| |    
T  28535344 ttgtgttaggaggagggtgggagacggtgtagaaacagatttttggcgggattgttggtgtggagatgttcctttgtgtgaccgttttagtcgcctttat 28535443  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | |||| ||||  ||||| || |||| ||||||||||||||| || |||||||||| || || |||||||||||| ||||||||||| ||||||||||||    
T  28535444 gacttgactgtgaacaatccaatctctgttaggaatatgttcttgttgggggtggatgtcggtggggaggcgttgaggtggcgtaggtggttgtgggctt 28535543  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    | ||||| |||||||||||||||| ||||||||| |||||||||||||| |||||||| ||| ||  |||||||||||| |||||||| | ||| | ||     
T  28535544 gagaggaagagttggtagaggagtttagggctttattactaacagtttcattgcaggaatcaatgacagatagatggctttggttaccaactcaggatgg 28535643  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    | |||| || |||| ||||| |||||||||||||||||||||||    
T  28535644 taggtactctgtacatggagcctatgacatgctgacatcacagg 28535687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 6 - 344
Target Start/End: Complemental strand, 42928597 - 42928259
Alignment:
Q  6 ttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgcctttttggctt 105  Q
    |||||||||| ||||| || || || || || ||||||| ||||||||||||||| |||||||||||    ||||  || |||   ||||| | || |||    
T  42928597 ttaggaggagggtgggtgacggtgctgaaacagatttttagcgtgattgttggtgcggtgatgttccgaggtgtgaccgttttagtcgcctatatgactt 42928498  T
Q  106 gtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttgggag 205  Q
    | ||||| | || ||| || ||||||||||||||||| || ||| || ||| ||||| ||||||||||||| ||||||| || |||||||||||||||||    
T  42928497 ggctgttaataaatcaatcacagttaggaatatgttcttgttggaggcggatgtgggtggggaggcgttgcagtggcgtcggcggttgtgggcttgggag 42928398  T
Q  206 gaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgatgggt 305  Q
    || |||||||||||||||||||||| ||| ||||| || |||| ||| ||||| ||||||  |||||||||| | |||||||| ||||| | || |||||    
T  42928397 gaagagttggtagaggagtgtagggttttattacttaccgtttttttacaggaatcagtgacagatagatggttgtggttaccaaatcaggatggtgggt 42928298  T
Q  306 attcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  42928297 attctgtacgtggagtctatgacatgctgacatcgcagg 42928259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 27795954 - 27795697
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||| ||||| ||||| || ||||||||||||||||| |||||||||||||||  ||||||  | ||||  || |||  ||| |||| |    
T  27795954 ttgtgttaggaggagggtgggggatggagctgatactgatttttggcgagattgttggtgtggtagtgttccgttgtgtgagcgctttaggcgtctttat 27795855  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    | |||  || | || || ||| || | |  ||||| |||||| || | |||||||| |  || ||||  |||| || ||||||| |  | || ||||  |    
T  27795854 gacttagctatccataaatcaatcacggcgaggaacatgttcttgttaggggtggaggatggtgggggagcgtggcagtggcgtcgccgattatgggtgt 27795755  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 258  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  27795754 gggaggaggacttggtagaggagtgtagggctttattactaacagtttctttggagga 27795697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10777255 - 10777192
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggt 64  Q
    ||||||||||||||| ||||| ||||| || ||||||||||||||||| |||||||||||||||    
T  10777255 ttgtgttaggaggagggtgggggatggagccgatactgatttttggcgagattgttggtgtggt 10777192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 24408209 - 24408139
Alignment:
Q  191 ttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattc 261  Q
    ||||||||||||||||| ||||||||||||||||||||||   | ||||| |||||| |||||||||||||    
T  24408209 ttgtgggcttgggaggaagagttggtagaggagtgtagggaactattacttacagttactttgcaggattc 24408139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 33169939 - 33169869
Alignment:
Q  191 ttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattc 261  Q
    ||||||| ||||||||| ||||||||||||||||||||||  || ||||| |||||| |||||||||||||    
T  33169939 ttgtgggtttgggaggacgagttggtagaggagtgtagggaattattacttacagttactttgcaggattc 33169869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8299851 - 8299913
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtgg 63  Q
    ||||||||||||||| ||||| ||||| || ||||| ||||||||||| ||||||||||||||    
T  8299851 ttgtgttaggaggagggtgggggatggagctgataccgatttttggcgcgattgttggtgtgg 8299913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 20208551 - 20208621
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||| | ||||| | |||||||||||||| ||||||||||||  | |||||||||||||||||||    
T  20208551 ggggaggcgtggaggtggaggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggcttt 20208621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 25857093 - 25857155
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtgg 63  Q
    ||||||||||||||| ||||| ||||| || ||||| ||||||||||| ||||||||||||||    
T  25857093 ttgtgttaggaggagggtgggggatggagctgataccgatttttggcgcgattgttggtgtgg 25857155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 23878398 - 23878445
Alignment:
Q  178 gtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtg 225  Q
    ||||||||||||||||||||| ||||||||||| ||||||| ||||||    
T  23878398 gtggcgtaggaggttgtgggcgtgggaggaggatttggtagtggagtg 23878445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 259
Target Start/End: Original strand, 18089618 - 18089688
Alignment:
Q  189 ggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggat 259  Q
    |||||||||||||||||||  ||||| ||||||||||||||| | | ||||| |||||| | |||||||||    
T  18089618 ggttgtgggcttgggaggaaaagttgatagaggagtgtagggatcttttacttacagttacattgcaggat 18089688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 27165789 - 27165858
Alignment:
Q  191 ttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggatt 260  Q
    |||||||||||| |||| |||||||||||| |||||||||  || ||||| | ||||| |||||||||||    
T  27165789 ttgtgggcttggaaggaagagttggtagagtagtgtagggaattattactcatagtttatttgcaggatt 27165858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 380188 - 380145
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtag 228  Q
    ||||| |||||||| ||||||||||||||||| |||||||||||    
T  380188 aggagattgtgggcgtgggaggaggagttggtcgaggagtgtag 380145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 4415532 - 4415599
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggc 231  Q
    |||||||||| |  |||| | |||||||||||||| ||||||||||||  | ||||||||||||||||    
T  4415532 ggggaggcgtggaagtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggc 4415599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 476494 - 476456
Alignment:
Q  191 ttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  476494 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 476456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 11574548 - 11574594
Alignment:
Q  186 ggaggttgtgggcttgggaggaggagttggtagaggagtgtagggct 232  Q
    |||| |||||||| |||||||||||| || |||||||||||||||||    
T  11574548 ggagattgtgggcgtgggaggaggagatgttagaggagtgtagggct 11574594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 22095104 - 22095150
Alignment:
Q  186 ggaggttgtgggcttgggaggaggagttggtagaggagtgtagggct 232  Q
    |||| |||||||| ||||||||||||||| ||||||||| |||||||    
T  22095104 ggagattgtgggcgtgggaggaggagttgttagaggagtttagggct 22095150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 7000618 - 7000667
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||||| |||||||| |||||  | |||||||||||||||||||    
T  7000618 aggaggttgtggtcttgggagaaggaggagttagaggagtgtagggcttt 7000667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 18089464 - 18089501
Alignment:
Q  33 atactgatttttggcgtgattgttggtgtggtgatgtt 70  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  18089464 atactgatttttggcgtgattgttagtgtggtaatgtt 18089501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 4324187 - 4324235
Alignment:
Q  186 ggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||||||||||||||||||  | |||| |||||||||| ||||    
T  4324187 ggaggttgtgggcttgggaggaggatctagtagcggagtgtaggacttt 4324235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 33170113 - 33170049
Alignment:
Q  17 gtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgt 81  Q
    |||||||| || || || ||||| |||||||||||||||||||||||  |||||||  |||||||    
T  33170113 gtgggagacggtgctgagactgacttttggcgtgattgttggtgtggaaatgttccgttttgtgt 33170049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 5 - 344
Target Start/End: Complemental strand, 3719 - 3380
Alignment:
Q  5 gttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgcctttttggct 104  Q
    ||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||| || || ||||| || ||||  ||||||  ||| ||||||| ||    
T  3719 gttaggaggagggtgggagatggtgcggataccgatttttggcgtgattgttggtgcggagacgttccactgtgtgcccggtttgggcgtctttttgact 3620  T
Q  105 tgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttggga 204  Q
    ||  ||| ||||| ||  |||| ||||||||||||||| || |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||    
T  3619 tgagtgtacacaaatctatctccgttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcggtggcgtaggaggttgtgggcctggga 3520  T
Q  205 ggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgatggg 304  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||  ||| |||||||| ||| ||||||| || | |||||||    
T  3519 ggaggagttggtagaggagtgtagggctttattactaacagtttctttacaggaatcagtgacagacagatggctttgggtacctaaccatgatgatggg 3420  T
Q  305 tattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    || |||||||||||||||||||| ||||||||||||||||    
T  3419 tactcagtacgtggagtctatgatatgctgacatcacagg 3380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 5e-78; HSPs: 36)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 91 - 342
Target Start/End: Complemental strand, 2554018 - 2553767
Alignment:
Q  91 gcgcctttttggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggagg 190  Q
    ||||||||||| ||||  ||||||||| ||| ||| |||||||||||||||| || |||||||||||||||| ||||| |||||||||||||||||| ||    
T  2554018 gcgcctttttgacttgaatgttcacaaatcaatcttagttaggaatatgttcttgttgggggtggacgtgggtggggaagcgttgcggtggcgtaggcgg 2553919  T
Q  191 ttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttaccta 290  Q
    ||||||||||||||| || |||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||  ||| |||||||| || |||||||    
T  2553918 ttgtgggcttgggagtagaagttggtaaaggagtgtagggctttattactaacagtttctttgcaggaatcagtgacagacagatggctttgattaccta 2553819  T
Q  291 atcaagctgatgggtattcagtacgtggagtctatgacatgctgacatcaca 342  Q
    |||| | || ||||||||| ||||||||||||||||| ||||||||||||||    
T  2553818 atcatgatggtgggtattctgtacgtggagtctatgatatgctgacatcaca 2553767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 96 - 344
Target Start/End: Complemental strand, 21168574 - 21168327
Alignment:
Q  96 tttttggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtg 195  Q
    |||||| ||||  ||||||||| ||| |||| ||||||||||||||| || | ||| | |||||||| |||||||||||||||||||||||| |||||||    
T  21168574 tttttgacttgaatgttcacaaatcaatctctgttaggaatatgttcttgttaggg-tagacgtgggaggggaggcgttgcggtggcgtaggcggttgtg 21168476  T
Q  196 ggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaa 295  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  ||| |||||||| ||||||||||||||     
T  21168475 ggcttgggaggaggagttggtagaggagtgtagggctttattactaacagtttctttgcaggaatcagtgacagacagatggctttggttacctaatcat 21168376  T
Q  296 gctgatgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    | || ||||||||| ||||||||||||||||| ||| ||||||||||||    
T  21168375 gatggtgggtattctgtacgtggagtctatgatatgttgacatcacagg 21168327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 38 - 344
Target Start/End: Original strand, 24767135 - 24767436
Alignment:
Q  38 gatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgcctttttggcttgtctgttcacaattcactctcagttaggaata 137  Q
    ||||||||||||||| ||||||| ||||||||||| || ||||  || |||   ||||| | || |||| ||||| |||| ||| || ||||||||||||    
T  24767135 gatttttggcgtgatcgttggtgcggtgatgttccactgtgtgaccgttttagtcgcctatatgacttggctgttaacaaatcaatcacagttaggaata 24767234  T
Q  138 tgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgtt 237  Q
    ||||| || |||| ||||||||||| ||||||||||||||||||||| |  ||||||||||||||||||| |||||||||||||||||||||| | | ||    
T  24767235 tgttcttgttgggcgtggacgtgggtggggaggcgttgcggtggcgtcgacggttgtgggcttgggaggaagagttggtagaggagtgtagggttgtatt 24767334  T
Q  238 actaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgatgggtattcagtacgtggagtctatgacatgctgaca 337  Q
    |||||||||||| ||| ||     ||||  | |||||||||| |||||||| ||||| | |||| ||||||| |||||||||||||||||||||||||||    
T  24767335 actaacagtttccttgaag-----agtgacaaatagatggctatggttaccaaatcaggatgataggtattctgtacgtggagtctatgacatgctgaca 24767429  T
Q  338 tcacagg 344  Q
    |||||||    
T  24767430 tcacagg 24767436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 15958482 - 15958825
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||| ||||| |||||  | || |||||||||||||||||||||||||||||| |||||||  ||||||  |  |||   || || | |    
T  15958482 ttgtgttaggaggagggtgggggatggatccgaaactgatttttggcgtgattgttggtgtggtaatgttccgttttgtgagctctttagtcggctatat 15958581  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    |  ||| ||||  ||||   | || |||||||| |||||||| |||||| |||||| || || |||||||||| || || |||| |  | || ||||| |    
T  15958582 gatttggctgtcaacaaagtaatcacagttaggcatatgttcttgctggaggtggatgttggtggggaggcgtggcagttgcgtcgtcgtttatgggcgt 15958681  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    || ||||  | ||| ||||||| ||||||| ||| ||||| ||||||||||||||||| ||| ||   ||||||||| | ||||||||  |||||| ||     
T  15958682 ggtaggaaaacttgttagaggaatgtagggttttattactgacagtttctttgcaggaatcattgcctgatagatggttgtggttaccggatcaaggtgg 15958781  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    |||||||||||| || || || | ||||||||||||||||||||    
T  15958782 tgggtattcagttcgcggtgtgtctgacatgctgacatcacagg 15958825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 33185898 - 33185834
Alignment:
Q  9 ggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcct 73  Q
    ||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||    
T  33185898 ggaggagggtgggggatggggctgaaactgatttttggcgtgattgttggtgtggtgatgttcct 33185834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 344
Target Start/End: Original strand, 14372848 - 14373003
Alignment:
Q  189 ggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacc 288  Q
    |||| ||||| ||||| |||||  | |||||||||||||||||||| ||||| ||||||||||||||||| || || |  ||||||||| | ||||||||    
T  14372848 ggttatgggcgtgggacgaggacctagtagaggagtgtagggctttattactgacagtttctttgcaggaatctgtttccgatagatggttgtggttacc 14372947  T
Q  289 taatcaagctgatgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
      |||| |  | ||| || ||||| ||||| || ||||||||||||||||| ||||    
T  14372948 ggatcagggaggtggttactcagtccgtggggtgtatgacatgctgacatcccagg 14373003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 344
Target Start/End: Original strand, 18651167 - 18651246
Alignment:
Q  265 gttagatagatggctctggttacctaatcaagctgatgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||||||| | |||||||| ||||| | || ||||||||| |||| |||||||||||||||||||||||||||||    
T  18651167 gttagatagatggttgtggttaccaaatcaggatggtgggtattctgtacatggagtctatgacatgctgacatcacagg 18651246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 26514011 - 26513967
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26514011 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 26513967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 191 - 261
Target Start/End: Complemental strand, 13937981 - 13937911
Alignment:
Q  191 ttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattc 261  Q
    ||||||| ||||||||| ||||||||||||||||||||||  || ||||| |||||| |||||||||||||    
T  13937981 ttgtgggtttgggaggaagagttggtagaggagtgtagggaattattacttacagttactttgcaggattc 13937911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 14372660 - 14372731
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcc 72  Q
    |||||| |||||||| ||||| |||||  | ||||||||||||||||| ||||||||||||||| |||||||    
T  14372660 ttgtgtcaggaggagggtgggggatggttccgatactgatttttggcgggattgttggtgtggtaatgttcc 14372731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17573325 - 17573388
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggt 64  Q
    ||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||||||||||||||    
T  17573325 ttgtgttaggaggagggtgggggatggagctgataccgatttttggcgcgattgttggtgtggt 17573388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17606003 - 17606066
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggt 64  Q
    ||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||||||||||||||    
T  17606003 ttgtgttaggaggagggtgggggatggagctgataccgatttttggcgagattgttggtgtggt 17606066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 649898 - 649968
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||| |  |||| | |||||||||||||||||||||||||||  | |||||||||||||||||||    
T  649898 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 649968  T

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Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 18051281 - 18051351
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||| |  |||| | |||||||||||||||||||||||||||  | |||||||||||||||||||    
T  18051281 ggggaggcgtgggagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 18051351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 9199084 - 9199151
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggc 231  Q
    |||||||||| |  |||| | |||||||||||||||||||||||||||  | ||||||||||||||||    
T  9199084 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggagaagttagaggagtgtagggc 9199151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 10576919 - 10576982
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggt 64  Q
    ||||||||||||||| ||||| ||||| || ||||| ||||||||| | |||||||||||||||    
T  10576919 ttgtgttaggaggagggtgggggatggagctgataccgatttttggtgagattgttggtgtggt 10576982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 21629776 - 21629839
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggt 64  Q
    ||||||||||||||| ||||| ||||| || ||||  ||||||||||| |||||||||||||||    
T  21629776 ttgtgttaggaggagggtgggggatggagctgatatcgatttttggcgagattgttggtgtggt 21629839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 17079023 - 17079093
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||| |  |||| | |||||||||||||||||||||||||||  | |||||||| ||||||||||    
T  17079023 ggggaggcgtgggagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagcgtagggcttt 17079093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 19350252 - 19350182
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||| |  ||||||||| || |||||||||| ||| |||||| ||||||||||||||||| ||||    
T  19350252 ggggaggcgtgggtgtggcgtagaagattgtgggcttcggaagaggagatggtagaggagtgtaggtcttt 19350182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 29976847 - 29976917
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||| |  ||||||||| || |||||||||||||| ||||||  |||||||||||||||| ||||    
T  29976847 ggggaggcgtgggtgtggcgtagaagattgtgggcttgggaagaggagacggtagaggagtgtaggtcttt 29976917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 20882895 - 20882964
Alignment:
Q  194 tgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcag 263  Q
    ||||| |||||||||||  ||||||| | |||||||| ||| ||||||||||| ||||||||||| ||||    
T  20882895 tgggcgtgggaggaggacctggtagaagggtgtagggatttattactaacagtctctttgcaggaatcag 20882964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 29055828 - 29055763
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||||| ||  ||||||||| |||||||||  | ||||||||||||||||| ||||||||||    
T  29055828 ggggaggcgtggcaatggcgtaggcggttgtgggtctaggaggaggagttggtaggggagtgtagg 29055763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 11060694 - 11060757
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtaggg 230  Q
    |||||||||| |  |||| | ||||||||||||||||||||||||||||   |||||||||||||||    
T  11060694 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggagt---tagaggagtgtaggg 11060757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 25350510 - 25350466
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||    
T  25350510 aggaggttatgggcgtgggaggaggagttggtggaggagtgtagg 25350466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 10921988 - 10921949
Alignment:
Q  41 ttttggcgtgattgttggtgtggtgatgttcctctttgtg 80  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  10921988 ttttggcgtgactgttggtgtggtgatgttcctttttgtg 10921949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 20882702 - 20882765
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggt 64  Q
    ||||||||||||||| ||||| ||||| || || ||  |||||||||| |||||||||||||||    
T  20882702 ttgtgttaggaggagggtgggggatggagccgaaaccaatttttggcgagattgttggtgtggt 20882765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 5085880 - 5085926
Alignment:
Q  186 ggaggttgtgggcttgggaggaggagttggtagaggagtgtagggct 232  Q
    |||| |||||||| |||||||||||| || |||||||||||||||||    
T  5085880 ggagattgtgggcgtgggaggaggagatgttagaggagtgtagggct 5085926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 18682401 - 18682455
Alignment:
Q  199 ttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttg 253  Q
    ||||||||| ||||||| |||||||||||||||| | ||||| |||||| |||||    
T  18682401 ttgggaggaagagttggcagaggagtgtagggctctattactcacagttactttg 18682455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 25318126 - 25318092
Alignment:
Q  200 tgggaggaggagttggtagaggagtgtagggcttt 234  Q
    ||||||||||||||| |||||||||||||||||||    
T  25318126 tgggaggaggagttgctagaggagtgtagggcttt 25318092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 26205620 - 26205586
Alignment:
Q  200 tgggaggaggagttggtagaggagtgtagggcttt 234  Q
    ||||||||||||||| |||||||||||||||||||    
T  26205620 tgggaggaggagttgctagaggagtgtagggcttt 26205586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 333532 - 333577
Alignment:
Q  189 ggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||| ||||| ||||||||| |||||||||||||| ||||    
T  333532 ggttgtgggcatgggatgaggagttgttagaggagtgtaggacttt 333577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 17873671 - 17873720
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||||||| ||||||||||||    |||||||||||||||||||    
T  17873671 aggaggttgtgggcatgggaggaggaggaattagaggagtgtagggcttt 17873720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 900707 - 900751
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||||||||| |||||||| |||||| ||| ||||||||||    
T  900707 aggaggttgtgggcgtgggaggatgagttgttagcggagtgtagg 900751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 13938174 - 13938110
Alignment:
Q  17 gtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgt 81  Q
    ||||||||||| || || ||||| ||||| |||||||||||||||||  |||||||  |||||||    
T  13938174 gtgggagatggtgctgagactgacttttgtcgtgattgttggtgtggaaatgttccgttttgtgt 13938110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 19255926 - 19255878
Alignment:
Q  186 ggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||| |||||||| |||||||||||| || ||| |||||||||||||||    
T  19255926 ggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttt 19255878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 33640204 - 33640156
Alignment:
Q  186 ggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||| |||||||| |||||||||||| || ||| |||||||||||||||    
T  33640204 ggagattgtgggcgtgggaggaggagatgttagtggagtgtagggcttt 33640156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 126 - 344
Target Start/End: Complemental strand, 41207362 - 41207144
Alignment:
Q  126 cagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtg 225  Q
    ||||||||||||||||| || |||||||||| ||||| |||||||||||||  |||||| |  |||||||||| |||||||| |||||||||||||||||    
T  41207362 cagttaggaatatgttcttgttgggggtggatgtgggtggggaggcgttgcaatggcgtcgtcggttgtgggcatgggaggaagagttggtagaggagtg 41207263  T
Q  226 tagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctgatgggtattcagtacgtggagtctat 325  Q
    ||||| ||| ||| | |||||||| |||||||| ||||||  |||||||||| | ||||||||  |||| | || ||||||||||||| ||||||| |||    
T  41207262 tagggttttattatttacagtttccttgcaggaatcagtggcagatagatggttgtggttaccagatcaggatggtgggtattcagtatgtggagtttat 41207163  T
Q  326 gacatgctgacatcacagg 344  Q
    |||||||||||||| ||||    
T  41207162 gacatgctgacatcgcagg 41207144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 4552367 - 4552297
Alignment:
Q  274 atggctctggttacctaatcaagctgatgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||| ||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||    
T  4552367 atggctccggttacctaatcatgatgatgggtattctgtacgtggagtctatgacatgctgacatcacagg 4552297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 28253191 - 28252848
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcctctttgtgttcggtttccgcgccttttt 100  Q
    ||||||||||||||| ||||| |||||  | ||||||||||||||||| |||||| |||||||||||||||   || |||  || |||   || || | |    
T  28253191 ttgtgttaggaggagggtgggggatggttccgatactgatttttggcgggattgtcggtgtggtgatgttctgtttcgtgagcgctttagacggctatat 28253092  T
Q  101 ggcttgtctgttcacaattcactctcagttaggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggctt 200  Q
    |  ||| | ||  ||||   | || | ||||||| ||||||  || |||||||||| || || || ||||||| |  ||||||| |  |||| ||||| |    
T  28253091 gatttggccgtcaacaaagtaatcacggttaggactatgtttttgttgggggtggaggttggtggtgaggcgtggtagtggcgtcgtcggttatgggcat 28252992  T
Q  201 gggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcaggattcagtgttagatagatggctctggttacctaatcaagctga 300  Q
    ||||||| ||  | |||||||||||||||||||| ||||| ||||||| ||||||||| || || | |||||||||| | ||| ||||  |||| |  |     
T  28252991 gggaggatgacctagtagaggagtgtagggctttattactgacagtttttttgcaggaatctgtttcagatagatggttgtggctaccggatcagggagg 28252892  T
Q  301 tgggtattcagtacgtggagtctatgacatgctgacatcacagg 344  Q
     || |||||||| ||| | || ||||||||||||||||||||||    
T  28252891 cggttattcagtccgtagggtgtatgacatgctgacatcacagg 28252848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 258
Target Start/End: Complemental strand, 40177009 - 40176882
Alignment:
Q  131 aggaatatgttcctgctgggggtggacgtgggcggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtaggg 230  Q
    ||||| |||||| || |||||||||| |  || ||||  |||| || ||||||| |  |||| ||||  ||||||||||| |||||||||||||||||||    
T  40177009 aggaagatgttcttgttgggggtggaggatggtgggggagcgtggcagtggcgtcgccggttatgggtgtgggaggaggacttggtagaggagtgtaggg 40176910  T
Q  231 ctttgttactaacagtttctttgcagga 258  Q
    |||| ||||||||||| |||||||||||    
T  40176909 ctttattactaacagtctctttgcagga 40176882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 12807996 - 12808044
Alignment:
Q  178 gtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgt 226  Q
    |||| |||||||||||||||| |||||||||| ||||||||||||||||    
T  12807996 gtggtgtaggaggttgtgggcgtgggaggaggcgttggtagaggagtgt 12808044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 18844486 - 18844530
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||    
T  18844486 aggaggttgtgggcgtgggaggaggagttggtggaggagtgtagg 18844530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 36804205 - 36804150
Alignment:
Q  179 tggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||| | ||||||||||| ||||||||||| ||| |||||||||||||||||||    
T  36804205 tggcgtcgaaggttgtgggcgtgggaggaggacttgttagaggagtgtagggcttt 36804150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 12645804 - 12645750
Alignment:
Q  204 aggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 258  Q
    ||||||| ||||||||||||||||||| ||| ||||||||| | |||||||||||    
T  12645804 aggaggatttggtagaggagtgtagggatttattactaacaatctctttgcagga 12645750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 16315622 - 16315672
Alignment:
Q  179 tggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||| ||||||||||| ||||||||||  ||||||||||||||||||    
T  16315622 tggcgtagtaggttgtgggcgtgggaggaggccttggtagaggagtgtagg 16315672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 12646007 - 12645935
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcct 73  Q
    ||||||||||||||| ||||||||||| ||    || ||||||||||| |||||||||||||||  |||||||    
T  12646007 ttgtgttaggaggagggtgggagatggagccacaacagatttttggcgagattgttggtgtggtagtgttcct 12645935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 31093540 - 31093468
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagg 257  Q
    |||||||| ||||| |||||||| ||||| ||||||||||||||| ||||  |||| || ||||| |||||||    
T  31093540 aggaggttatgggcgtgggaggatgagttagtagaggagtgtaggactttactactgactgtttcattgcagg 31093468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 1380390 - 1380327
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgta 227  Q
    |||||||||| |  |||| | |||||||||||||||||||||||||||  | ||||||||||||    
T  1380390 ggggaggcgtggaagtggaggaggaggttgtgggcttgggaggaggaggagttagaggagtgta 1380327  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 2999580 - 2999647
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggc 231  Q
    |||||||||| |  |||| | |||||||||||||| ||||||||||||  | ||||||||||||||||    
T  2999580 ggggaggcgtggaagtggaggaggaggttgtgggcctgggaggaggaggagttagaggagtgtagggc 2999647  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 18489094 - 18489051
Alignment:
Q  186 ggaggttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    ||||||||||||| ||||||||||| || |||||||||||||||    
T  18489094 ggaggttgtgggcgtgggaggaggaattagtagaggagtgtagg 18489051  T

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Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 36804420 - 36804365
Alignment:
Q  179 tggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||| | ||||||| ||| ||||||||||| ||| |||||||||||||||||||    
T  36804420 tggcgtcgaaggttgtaggcgtgggaggaggacttgttagaggagtgtagggcttt 36804365  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 40177139 - 40177068
Alignment:
Q  1 ttgtgttaggaggagagtgggagatggggcagatactgatttttggcgtgattgttggtgtggtgatgttcc 72  Q
    ||||||||||||||| ||||| ||||| |  ||||| ||||||||| | |||||||||||||||  ||||||    
T  40177139 ttgtgttaggaggagggtgggggatggagttgataccgatttttggtgagattgttggtgtggtagtgttcc 40177068  T

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Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 22052899 - 22052865
Alignment:
Q  200 tgggaggaggagttggtagaggagtgtagggcttt 234  Q
    ||||||||||||||| |||||||||||||||||||    
T  22052899 tgggaggaggagttgctagaggagtgtagggcttt 22052865  T

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Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 31071643 - 31071681
Alignment:
Q  178 gtggcgtaggaggttgtgggcttgggaggaggagttggt 216  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  31071643 gtggcgtaggaggttgtgggattgggaggaggacttggt 31071681  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 38604247 - 38604305
Alignment:
Q  200 tgggaggaggagttggtagaggagtgtagggctttgttactaacagtttctttgcagga 258  Q
    |||||||| || ||||||||||||||||||  |||  |||| |||||||||||||||||    
T  38604247 tgggaggaagacttggtagaggagtgtaggaatttagtacttacagtttctttgcagga 38604305  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 44547706 - 44547756
Alignment:
Q  190 gttgtgggcttgggaggaggagttggtagaggagtgtagggctttgttact 240  Q
    ||||| ||| |||||||||||||||||||||||||||| | |||| |||||    
T  44547706 gttgttggcatgggaggaggagttggtagaggagtgtatgactttattact 44547756  T

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Target: scaffold0179 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 7836 - 7766
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||| | ||||| | |||||||||||||| ||||||||||||  | |||||||||||||||||||    
T  7836 ggggaggcgtggaggtggaggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggcttt 7766  T

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Target: scaffold0179; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 12770 - 12700
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||| | ||||| | |||||||||||||| ||||||||||||  | |||||||||||||||||||    
T  12770 ggggaggcgtggaggtggtggaggaggttgtgggcatgggaggaggaggagttagaggagtgtagggcttt 12700  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 182416 - 182367
Alignment:
Q  185 aggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    |||||||||||||||||||||||||||  | |||||||||||||||||||    
T  182416 aggaggttgtgggcttgggaggaggaggagttagaggagtgtagggcttt 182367  T

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Target: scaffold0369 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 344
Target Start/End: Original strand, 11186 - 11217
Alignment:
Q  313 acgtggagtctatgacatgctgacatcacagg 344  Q
    ||||||||||||||||||||||||||||||||    
T  11186 acgtggagtctatgacatgctgacatcacagg 11217  T

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Target: scaffold0555 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 7949 - 7911
Alignment:
Q  191 ttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  7949 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 7911  T

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Target: scaffold0112 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 15482 - 15552
Alignment:
Q  164 ggggaggcgttgcggtggcgtaggaggttgtgggcttgggaggaggagttggtagaggagtgtagggcttt 234  Q
    ||||||| || | |||||||| | || |||||||| |||||||||||  || |||||||||||||||||||    
T  15482 ggggaggggtggaggtggcgtcgcagattgtgggcgtgggaggaggatatgttagaggagtgtagggcttt 15552  T

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Target: scaffold0043 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 34468 - 34506
Alignment:
Q  191 ttgtgggcttgggaggaggagttggtagaggagtgtagg 229  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  34468 ttgtgggtgtgggaggaggagttggtagaggagtgtagg 34506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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