View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12435_low_2 (Length: 321)
Name: NF12435_low_2
Description: NF12435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12435_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 35383677 - 35383385
Alignment:
| Q |
11 |
cacagatgccaattcagacggcttcaatattgcagcacaaccagcagccagagctggagcaattttccaagtcgccattaagagaggatagttcctatat |
110 |
Q |
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| T |
35383677 |
cacagatgccaattcagacggcttcaatattgcagcacaaccagcagccagagctggagcaattttccaagtcgccattaagagaggatagttcctatat |
35383578 |
T |
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| Q |
111 |
ataataaaatcagttacatcatttaatgagtctaccaaatagatcatcaaaccagatagtttcattgcaaaagaattcataaacaacaagttgaagaaaa |
210 |
Q |
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| T |
35383577 |
ataataaaatcagttacatcatttaatgagtctaccaaatagatcatcaaaccagatagtttcattgaaaaagaattcataaacaacaagttgaagaaaa |
35383478 |
T |
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| Q |
211 |
aagcagataccatggagtaattaatgcaacaacaccaataggctccttcagaacatggctcttaaaggtatccataggaagggatacaggagc |
303 |
Q |
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| T |
35383477 |
aagcagataccatggagtaattaatgcaacaacaccaataggctccttcagaacatggctcttaaaggtatccataggaagggatacaggagc |
35383385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 35363271 - 35363367
Alignment:
| Q |
11 |
cacagatgccaattcagacggcttcaatattgcagcacaaccagcagccagagctggagcaattttccaagtcgccattaagagaggatagttccta |
107 |
Q |
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| T |
35363271 |
cacagatgccaattcagacggcttcaagattgcagcacaaccagcagccagagctggagcaattttccttgccgccattgagagaggatagttccta |
35363367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 217 - 304
Target Start/End: Original strand, 35363432 - 35363519
Alignment:
| Q |
217 |
ataccatggagtaattaatgcaacaacaccaataggctccttcagaacatggctcttaaaggtatccataggaagggatacaggagct |
304 |
Q |
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| T |
35363432 |
ataccatggagtaattaatgcaacaacaccaataggctccttgagaacatagcttttgaaggtattcataggaagagatataggagct |
35363519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 44178166 - 44178073
Alignment:
| Q |
14 |
agatgccaattcagacggcttcaatattgcagcacaaccagcagccagagctggagcaattttccaagtcgccattaagagaggatagttccta |
107 |
Q |
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| T |
44178166 |
agatgccaattcagatggcttcaatatcgcagcacaaccagcagcaagagcaggagcaaccttccacgtagccatcaacataggatagttccta |
44178073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 291
Target Start/End: Complemental strand, 44177672 - 44177598
Alignment:
| Q |
217 |
ataccatggagtaattaatgcaacaacaccaataggctccttcagaacatggctcttaaaggtatccataggaag |
291 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||| |||||||| ||| | || |||||||| ||||| |
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| T |
44177672 |
ataccatggagttattaatccaacaacaccaataggctccttaagaacatgactcctgaatgtatccattggaag |
44177598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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