View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12436_high_1 (Length: 424)

Name: NF12436_high_1
Description: NF12436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12436_high_1
NF12436_high_1
[»] chr4 (1 HSPs)
chr4 (22-409)||(49145538-49145911)
[»] chr2 (2 HSPs)
chr2 (290-409)||(6867461-6867580)
chr2 (34-203)||(6867668-6867837)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 22 - 409
Target Start/End: Original strand, 49145538 - 49145911
Alignment:
Q  22 aatgattgattcaggagctgaaacagcttgcggatgaactacgttctgatgttattttcagtgtttcaagaactgggggacatttaggttcaagtttagg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49145538 aatgattgattcaggagctgaaacagcttgcggatgaactacgttctgatgttattttcagtgtttcaagaactgggggacatttaggttcaagtttagg 49145637  T
Q  122 tgttgttgaactaactattgctcttcactatgtttttaatacacctcaggataagattttgtgggatgttggtcaccaggttagttggtgttgttatgtt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49145638 tgttgttgaactaactattgctcttcactatgtttttaatacacctcaggataagattttgtgggatgttggtcaccaggttagttggtgttgttatgtt 49145737  T
Q  222 gtattagtttgttgaggattaaattctgtgtgatatttgtttgtgaattgaaatcttannnnnnnnnngcagtcataccctcataaaatacttactggta 321  Q
    || |  ||||||||||| ||||||||           ||||||||| |||||||||||          ||||||||||||||||||||||||||||||||    
T  49145738 gtctatgtttgttgaggtttaaattc-----------tgtttgtgatttgaaatctta---tgtttttgcagtcataccctcataaaatacttactggta 49145823  T
Q  322 gaagggataagatgcataccatgagacagactaatggattgtctggatttacaaaacgttctgagagtgaatatgattcttttggcac 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49145824 gaagggataagatgcataccatgagacagactaatggattgtctggatttacaaaacgttctgagagtgaatatgattcttttggcac 49145911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 290 - 409
Target Start/End: Complemental strand, 6867580 - 6867461
Alignment:
Q  290 gcagtcataccctcataaaatacttactggtagaagggataagatgcataccatgagacagactaatggattgtctggatttacaaaacgttctgagagt 389  Q
    ||||||||| || |||||||| || |||||||||||| |||||||||||||  |||| ||||   |||||||   ||| ||||||||||| |||||||||    
T  6867580 gcagtcatatccacataaaattctgactggtagaaggaataagatgcatactttgaggcagaaagatggattaagtgggtttacaaaacgctctgagagt 6867481  T
Q  390 gaatatgattcttttggcac 409  Q
    |||| ||||  |||||||||    
T  6867480 gaatttgatatttttggcac 6867461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 6867837 - 6867668
Alignment:
Q  34 aggagctgaaacagcttgcggatgaactacgttctgatgttattttcagtgtttcaagaactgggggacatttaggttcaagtttaggtgttgttgaact 133  Q
    |||| |||||||| ||||||  ||| || ||||| ||| |||||||||||||||||  ||||||||| ||||| || ||||   | |||||||| |||||    
T  6867837 aggaactgaaacaacttgcgtgtgagctgcgttcagatattattttcagtgtttcacaaactgggggtcatttgggatcaaaccttggtgttgtggaact 6867738  T
Q  134 aactattgctcttcactatgtttttaatacacctcaggataagattttgtgggatgttggtcaccaggtt 203  Q
     ||| |||| || || |||||||| ||| | |||   || || || ||||||||||| ||||| ||||||    
T  6867737 cactgttgccctccattatgttttcaatgctcctattgacaaaatcttgtgggatgtaggtcatcaggtt 6867668  T

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