View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12436_high_2 (Length: 217)
Name: NF12436_high_2
Description: NF12436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12436_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 199
Target Start/End: Original strand, 47385654 - 47385846
Alignment:
| Q |
7 |
ggaggagcagagagaaccttgtagtccagtattaatagctactaagaaaccaaaaatccataattttccaccacctttgacaacgatgagaggatcagaa |
106 |
Q |
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| T |
47385654 |
ggaggagcaaagagaaccttgtagtccagtattaatagctactaagaaaccaaaaatccataattttccaccacctttgacaacgatgagaggatcagaa |
47385753 |
T |
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| Q |
107 |
tctcttcgtgttagaccccaccgtgaagatggtaggttagtaattgaagtcacaaaggtcccaccaagtacctcatgttttcaagctgataga |
199 |
Q |
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| T |
47385754 |
tctcttcgtgttagaccccaccgtgaagatggtaggttagtaattgaagtcacaaaggtcccaccaagtacatcatgttttcaagctgataga |
47385846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 47373275 - 47373086
Alignment:
| Q |
10 |
ggagcagagagaaccttgtagtccagtattaatagctactaagaaaccaaaaatccataattttccaccacctttgacaacgatgagaggatcagaatct |
109 |
Q |
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| T |
47373275 |
ggagcaaagacaaccttgttctcaagttttagcagctactaagaaagtgaaaactcagaattttccaccacctttgacaaccataagaggatcagaatct |
47373176 |
T |
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| Q |
110 |
cttcgtgttagaccccaccgtgaagatggtaggttagtaattgaagtcacaaaggtcccaccaagtacctcatgttttcaagctgataga |
199 |
Q |
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| T |
47373175 |
tttcatgttagaacccaccgtggagatggaaggttggtgattgaagtcactaaggtcccaccaagtacttcttgctttcaagctgataga |
47373086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 200
Target Start/End: Original strand, 20976602 - 20976674
Alignment:
| Q |
128 |
cgtgaagatggtaggttagtaattgaagtcacaaaggtcccaccaagtacctcatgttttcaagctgatagat |
200 |
Q |
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| T |
20976602 |
cgtgaagatggaaggttggcaattgaagtaaaaaaggtcccaccaagtacctcatgttttcaagctgatagat |
20976674 |
T |
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