View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12436_low_1 (Length: 483)

Name: NF12436_low_1
Description: NF12436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12436_low_1
NF12436_low_1
[»] scaffold0026 (1 HSPs)
scaffold0026 (13-468)||(12437-12872)
[»] chr2 (20 HSPs)
chr2 (13-465)||(26582856-26583313)
chr2 (321-468)||(5706610-5706758)
chr2 (238-471)||(23062983-23063216)
chr2 (275-471)||(23878286-23878481)
chr2 (295-409)||(23089608-23089722)
chr2 (305-409)||(21907744-21907848)
chr2 (13-331)||(23168973-23169294)
chr2 (13-331)||(23580230-23580551)
chr2 (295-409)||(23102036-23102150)
chr2 (279-418)||(29281336-29281475)
chr2 (341-449)||(9978-10086)
chr2 (238-394)||(24660876-24661032)
chr2 (338-449)||(25181446-25181557)
chr2 (236-433)||(26884503-26884701)
chr2 (248-351)||(23264421-23264524)
chr2 (415-471)||(23264557-23264613)
chr2 (17-75)||(20914263-20914321)
chr2 (297-387)||(27208318-27208408)
chr2 (297-387)||(27210653-27210743)
chr2 (17-49)||(14563981-14564013)
[»] chr3 (22 HSPs)
chr3 (17-471)||(18914193-18914646)
chr3 (14-465)||(41455687-41456142)
chr3 (319-465)||(24192272-24192418)
chr3 (275-409)||(16802041-16802175)
chr3 (234-407)||(13324376-13324549)
chr3 (305-409)||(55499700-55499804)
chr3 (234-351)||(13302844-13302961)
chr3 (279-432)||(14865184-14865338)
chr3 (355-471)||(17241085-17241201)
chr3 (234-351)||(13313520-13313637)
chr3 (78-138)||(18136117-18136177)
chr3 (17-69)||(18136253-18136306)
chr3 (17-75)||(18129733-18129792)
chr3 (398-467)||(10390034-10390104)
chr3 (398-467)||(10415123-10415193)
chr3 (398-467)||(10421793-10421863)
chr3 (275-359)||(17243260-17243343)
chr3 (78-134)||(18129607-18129663)
chr3 (17-75)||(13036915-13036973)
chr3 (17-50)||(31690553-31690586)
chr3 (17-50)||(31943629-31943662)
chr3 (17-49)||(19344139-19344171)
[»] scaffold0634 (2 HSPs)
scaffold0634 (13-402)||(2747-3136)
scaffold0634 (397-433)||(3181-3217)
[»] chr6 (28 HSPs)
chr6 (13-465)||(29614738-29615195)
chr6 (273-468)||(12167637-12167832)
chr6 (273-468)||(19286546-19286741)
chr6 (273-466)||(19877730-19877923)
chr6 (273-468)||(19883506-19883701)
chr6 (321-468)||(34640575-34640723)
chr6 (321-468)||(34647249-34647397)
chr6 (273-468)||(19786455-19786650)
chr6 (308-468)||(25470290-25470451)
chr6 (338-466)||(21365067-21365195)
chr6 (338-466)||(23969049-23969177)
chr6 (243-409)||(18799754-18799920)
chr6 (94-409)||(25396340-25396654)
chr6 (275-409)||(21565765-21565899)
chr6 (248-438)||(19471891-19472080)
chr6 (338-449)||(20008493-20008604)
chr6 (14-129)||(12167420-12167535)
chr6 (14-129)||(19877513-19877628)
chr6 (14-129)||(19883289-19883404)
chr6 (14-129)||(19286329-19286444)
chr6 (14-129)||(19786751-19786866)
chr6 (275-351)||(9186827-9186903)
chr6 (236-414)||(19300317-19300495)
chr6 (254-351)||(24513456-24513553)
chr6 (415-468)||(24513370-24513423)
chr6 (19-75)||(23105384-23105440)
chr6 (17-50)||(19439888-19439921)
chr6 (358-402)||(24513425-24513469)
[»] scaffold0025 (1 HSPs)
scaffold0025 (319-465)||(14977-15123)
[»] chr7 (29 HSPs)
chr7 (234-465)||(13742945-13743174)
chr7 (273-468)||(13006706-13006901)
chr7 (272-465)||(13123506-13123698)
chr7 (322-468)||(12591230-12591377)
chr7 (248-471)||(13678772-13678995)
chr7 (275-471)||(16676660-16676845)
chr7 (275-471)||(17650896-17651081)
chr7 (272-465)||(12710435-12710627)
chr7 (338-466)||(3857953-3858082)
chr7 (305-409)||(11389922-11390026)
chr7 (305-449)||(20311597-20311740)
chr7 (254-443)||(46625275-46625464)
chr7 (338-449)||(2464763-2464874)
chr7 (305-403)||(11383440-11383538)
chr7 (13-129)||(13742686-13742803)
chr7 (279-449)||(16090425-16090595)
chr7 (277-449)||(29181654-29181826)
chr7 (13-129)||(13123851-13123967)
chr7 (14-129)||(13006489-13006604)
chr7 (13-129)||(12710780-12710896)
chr7 (310-433)||(14320192-14320316)
chr7 (305-409)||(21231571-21231674)
chr7 (17-75)||(12694777-12694835)
chr7 (17-69)||(14945802-14945856)
chr7 (17-69)||(15373395-15373449)
chr7 (17-75)||(15142390-15142448)
chr7 (17-75)||(45185638-45185695)
chr7 (17-50)||(1612809-1612842)
chr7 (398-445)||(13678982-13679030)
[»] chr5 (23 HSPs)
chr5 (273-468)||(23527904-23528099)
chr5 (305-445)||(18408491-18408631)
chr5 (338-466)||(28889925-28890053)
chr5 (338-466)||(28896629-28896757)
chr5 (338-466)||(28909877-28910005)
chr5 (338-466)||(28931569-28931697)
chr5 (338-466)||(28946272-28946400)
chr5 (338-449)||(19236299-19236410)
chr5 (340-449)||(22467181-22467290)
chr5 (338-449)||(22460555-22460666)
chr5 (78-138)||(22232436-22232496)
chr5 (14-129)||(23527632-23527747)
chr5 (338-466)||(28933070-28933200)
chr5 (398-468)||(20819618-20819689)
chr5 (398-468)||(20826718-20826789)
chr5 (297-433)||(34829441-34829578)
chr5 (17-66)||(22232575-22232625)
chr5 (17-75)||(25013745-25013803)
chr5 (361-409)||(22439322-22439370)
chr5 (17-71)||(10035305-10035359)
chr5 (17-71)||(21901795-21901849)
chr5 (305-351)||(22439360-22439406)
chr5 (17-70)||(18819096-18819149)
[»] chr1 (15 HSPs)
chr1 (273-466)||(41111214-41111407)
chr1 (307-408)||(18712117-18712218)
chr1 (338-449)||(20858305-20858416)
chr1 (338-449)||(21705674-21705785)
chr1 (338-449)||(21710217-21710328)
chr1 (338-449)||(20851678-20851789)
chr1 (14-129)||(41110997-41111112)
chr1 (78-138)||(20941657-20941717)
chr1 (238-443)||(22030298-22030504)
chr1 (238-351)||(11157441-11157554)
chr1 (297-434)||(19961547-19961684)
chr1 (17-69)||(20941793-20941846)
chr1 (17-75)||(23631145-23631203)
chr1 (17-75)||(41312336-41312394)
chr1 (17-69)||(20824296-20824349)
[»] scaffold1773 (2 HSPs)
scaffold1773 (272-465)||(452-644)
scaffold1773 (13-129)||(153-269)
[»] chr4 (17 HSPs)
chr4 (272-468)||(8046420-8046616)
chr4 (321-468)||(53483023-53483171)
chr4 (297-449)||(11847462-11847614)
chr4 (305-471)||(15407454-15407608)
chr4 (279-449)||(16147376-16147546)
chr4 (318-409)||(14486049-14486140)
chr4 (297-443)||(13887144-13887289)
chr4 (297-443)||(13888001-13888146)
chr4 (311-443)||(15244587-15244719)
chr4 (316-439)||(15307497-15307620)
chr4 (78-138)||(14555881-14555941)
chr4 (13-129)||(8046777-8046893)
chr4 (238-438)||(8834185-8834385)
chr4 (234-287)||(14485988-14486041)
chr4 (17-69)||(14556017-14556070)
chr4 (17-74)||(30237938-30237995)
chr4 (143-196)||(8046692-8046745)
[»] scaffold0247 (1 HSPs)
scaffold0247 (295-468)||(10667-10829)
[»] chr8 (13 HSPs)
chr8 (272-465)||(23865885-23866078)
chr8 (358-468)||(17053949-17054060)
chr8 (305-471)||(14057148-14057302)
chr8 (305-471)||(25111354-25111508)
chr8 (338-449)||(24321216-24321327)
chr8 (248-409)||(18613531-18613691)
chr8 (13-129)||(19902808-19902924)
chr8 (78-138)||(19987990-19988050)
chr8 (17-75)||(20005554-20005612)
chr8 (13-129)||(23865615-23865732)
chr8 (14-91)||(17053780-17053858)
chr8 (17-69)||(21282245-21282298)
chr8 (18-69)||(19988126-19988178)
[»] scaffold0317 (2 HSPs)
scaffold0317 (248-471)||(665-888)
scaffold0317 (398-445)||(875-923)
[»] scaffold0456 (2 HSPs)
scaffold0456 (186-468)||(243-504)
scaffold0456 (186-468)||(7388-7649)
[»] scaffold0222 (1 HSPs)
scaffold0222 (254-471)||(16086-16303)
[»] scaffold0117 (2 HSPs)
scaffold0117 (273-465)||(9167-9358)
scaffold0117 (13-129)||(9512-9628)
[»] scaffold0154 (1 HSPs)
scaffold0154 (234-409)||(30195-30370)
[»] scaffold0249 (2 HSPs)
scaffold0249 (78-191)||(7557-7670)
scaffold0249 (17-85)||(7730-7798)
[»] scaffold0461 (2 HSPs)
scaffold0461 (275-471)||(581-766)
scaffold0461 (275-372)||(7605-7702)
[»] scaffold0476 (1 HSPs)
scaffold0476 (275-432)||(3854-4011)
[»] scaffold0232 (1 HSPs)
scaffold0232 (238-443)||(18961-19166)
[»] scaffold0138 (1 HSPs)
scaffold0138 (238-443)||(1117-1322)
[»] scaffold0053 (2 HSPs)
scaffold0053 (125-444)||(81764-82082)
scaffold0053 (279-449)||(80036-80206)
[»] scaffold0124 (1 HSPs)
scaffold0124 (306-471)||(34861-35015)
[»] scaffold0029 (4 HSPs)
scaffold0029 (358-465)||(111271-111378)
scaffold0029 (338-449)||(91747-91858)
scaffold0029 (338-449)||(97473-97584)
scaffold0029 (13-192)||(110939-111126)
[»] scaffold0310 (1 HSPs)
scaffold0310 (305-406)||(6876-6976)
[»] scaffold0924 (1 HSPs)
scaffold0924 (366-465)||(1343-1442)
[»] scaffold0077 (3 HSPs)
scaffold0077 (275-409)||(4195-4329)
scaffold0077 (80-133)||(17972-18025)
scaffold0077 (80-133)||(23605-23658)
[»] scaffold0028 (2 HSPs)
scaffold0028 (248-409)||(65414-65575)
scaffold0028 (316-443)||(1445-1572)
[»] scaffold0090 (1 HSPs)
scaffold0090 (269-433)||(17497-17661)
[»] scaffold0235 (2 HSPs)
scaffold0235 (305-458)||(23192-23334)
scaffold0235 (275-458)||(15475-15647)
[»] scaffold0004 (2 HSPs)
scaffold0004 (256-471)||(116183-116388)
scaffold0004 (275-409)||(129221-129355)
[»] scaffold0094 (1 HSPs)
scaffold0094 (248-443)||(51554-51749)
[»] scaffold0085 (1 HSPs)
scaffold0085 (321-449)||(4217-4345)
[»] scaffold0031 (2 HSPs)
scaffold0031 (238-443)||(121200-121406)
scaffold0031 (238-443)||(132077-132283)
[»] scaffold0139 (1 HSPs)
scaffold0139 (248-472)||(15521-15733)
[»] scaffold0020 (1 HSPs)
scaffold0020 (256-409)||(102503-102656)
[»] scaffold0023 (1 HSPs)
scaffold0023 (356-449)||(134867-134960)
[»] scaffold1061 (1 HSPs)
scaffold1061 (254-355)||(1716-1817)
[»] scaffold0107 (1 HSPs)
scaffold0107 (305-402)||(41171-41267)
[»] scaffold0348 (3 HSPs)
scaffold0348 (78-138)||(1527-1587)
scaffold0348 (17-69)||(1663-1716)
scaffold0348 (17-50)||(3107-3140)
[»] scaffold0483 (1 HSPs)
scaffold0483 (303-434)||(11569-11700)
[»] scaffold0001 (3 HSPs)
scaffold0001 (236-433)||(493588-493786)
scaffold0001 (44-129)||(174440-174525)
scaffold0001 (319-381)||(525142-525204)
[»] scaffold0006 (1 HSPs)
scaffold0006 (415-465)||(49595-49645)
[»] scaffold0011 (1 HSPs)
scaffold0011 (17-69)||(152546-152599)
[»] scaffold0108 (1 HSPs)
scaffold0108 (17-73)||(45691-45747)
[»] scaffold0535 (1 HSPs)
scaffold0535 (19-69)||(5969-6020)
[»] scaffold0261 (2 HSPs)
scaffold0261 (297-372)||(24192-24267)
scaffold0261 (397-433)||(24070-24106)
[»] scaffold0244 (1 HSPs)
scaffold0244 (17-75)||(13789-13847)
[»] scaffold0049 (1 HSPs)
scaffold0049 (17-71)||(42870-42924)
[»] scaffold0106 (2 HSPs)
scaffold0106 (17-69)||(46695-46748)
scaffold0106 (17-69)||(50968-51021)
[»] scaffold1853 (1 HSPs)
scaffold1853 (17-69)||(741-793)
[»] scaffold0088 (1 HSPs)
scaffold0088 (17-49)||(31790-31822)


Alignment Details
Target: scaffold0026 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 13 - 468
Target Start/End: Complemental strand, 12872 - 12437
Alignment:
Q  13 aacctgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaacccc-acacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||| ||| | |||||| | ||||||||||||| || || | | ||| ||||||||||||||| | |||||||||||||    
T  12872 aacctgtgtatatctacatacaactcaactacacatatatctcatatgacttactactccgagagttctaacaatccagaacatacacaattaattataa 12773  T
Q  112 ttatgcacatacatcaatttcattcaat-gtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatcat 210  Q
    |||||| ||||||||||||||||||||| || ||| ||  |||||||||||| |||||| |||||||||||||| ||||||||||||||| ||||||||     
T  12772 ttatgcgcatacatcaatttcattcaatagttatacat--tcacttgatttcttactcaatcatctccaaaattcactaacatcaaccaa-ttcgatcac 12676  T
Q  211 cagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaaggtcccctcaatgcacaaagcaaa 309  Q
    | |   ||| ||||||| ||||| |||||||||||||  |||| ||||| || || |||||||||||||||||| | ||||||||  ||||| |||||||    
T  12675 cggcttgttctagtaggattctgatacctatacaagggatatacaagttaaaggaaatattttagaatgctcaagaagtcccctcg-tgcacgaagcaaa 12577  T
Q  310 -gttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggt 408  Q
     |||||||||| ||||||||||||  ||||||||||||                    ||||||||||||||||| || |||||||||||||||||||||    
T  12576 agttcagaaagaggctgactaaggctcacttcgcttaa--------------------gcgaccggcttacagtaggtctgggttcagctcgcttacggt 12497  T
Q  409 ttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12496 tcgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 12437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 5e-91; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 13 - 465
Target Start/End: Original strand, 26582856 - 26583313
Alignment:
Q  13 aacctgtgtatatctacatacaacttaaccat-acatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||||||| || |||||||||| ||||||||||| || || ||  || ||||||||||||||| | |||||| ||||||    
T  26582856 aacctgtgtatatctacatacaacttaactattacatatgttttatatgacttactactccgcaactcaaacaatccagaacatacacaattatttataa 26582955  T
Q  112 ttatgcacatacatcaatttcattcaa--tgtaat--atataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgat 207  Q
    |||||| |||||||||||  ||||| |  ||| ||  ||||| ||||| ||||||||||||| |||||||||| ||||||||||| ||| ||| ||||||    
T  26582956 ttatgcgcatacatcaatcacattccacatgttatgtatatattcactcgatttcatactcaatcatctccaacatttactaacaccaatcaa-ttcgat 26583054  T
Q  208 catcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaaggtcccctcaatgcacaaagc 306  Q
    || | |   ||| || ||||  || | |||||| || ||| |||||  |||| ||||| ||||| |||||||||||| | ||||||||  ||||| || |    
T  26583055 caccggctagttctaataggagtcggttacctacaccagggttatactagttaaaagaaatattatagaatgctcaagaagtcccctcc-tgcacgaaac 26583153  T
Q  307 aaa-gttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttac 405  Q
    ||| ||||||||   |||||||||||    ||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||    
T  26583154 aaaagttcagaagaaggctgactaagacttacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaggtctgggttcagctcgcttac 26583253  T
Q  406 ggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 465  Q
    || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26583254 gggtcgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 26583313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 321 - 468
Target Start/End: Complemental strand, 5706758 - 5706610
Alignment:
Q  321 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggt 419  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| | | |||| |||| |||||||||| | |||||||||    
T  5706758 ggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacggt 5706659  T
Q  420 tcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  5706658 tcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 5706610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 238 - 471
Target Start/End: Original strand, 23062983 - 23063216
Alignment:
Q  238 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 336  Q
    |||| |||| ||||| ||||||||||| | |||||  ||||||||||||| |||||| ||||||| | |||||||||| ||||||||||||||||||| |    
T  23062983 tatataagggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccct-aatgcacgaggcaaagttcaaaaagtggctgactaaggtcaa 23063081  T
Q  337 cttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttc 436  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||  |||| |||||   |||||| |||  | |||  |||||||||| ||||||||||    
T  23063082 cttcgcttaagcgacggctggttcgcttaagcgaccggcttacagagagttggggtttcactcgctaacgcctcgcttgcggttcgcttaagcgaacttc 23063181  T
Q  437 tgacagaatcaaaatggtttttcgctcacaggttc 471  Q
    |||||||||  ||||| ||||||||| || |||||    
T  23063182 tgacagaatgcaaatgatttttcgcttacgggttc 23063216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 275 - 471
Target Start/End: Original strand, 23878286 - 23878481
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 373  Q
    ||||||||||||| |||||| | ||||| | |||| ||||| |||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  23878286 aatgctcaaaaggatcccct-agtgcacgaggcaaggttca-aaagtggctgactaaggtcatcttcgcttaagcgacggctagttcgcttaagcgaccg 23878383  T
Q  374 gcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 471  Q
    ||||||||||||| ||||||| |||||||||||||| |||  | ||||||||||||||| |  || ||||||||||| ||||  ||||||||||||||    
T  23878384 gcttacagtaagtctgggttctgctcgcttacggttcgcttgcagttcgcttgagcgaattcttggcagaatcaaaaaggttcctcgctcacaggttc 23878481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 295 - 409
Target Start/End: Complemental strand, 23089722 - 23089608
Alignment:
Q  295 aatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc 394  Q
    ||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||||||| |||||||    
T  23089722 aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtccagttcgcttaagcgaccggcttacagtaagtctgggttc 23089623  T
Q  395 agctcgcttacggtt 409  Q
     ||||||||||||||    
T  23089622 tgctcgcttacggtt 23089608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 305 - 409
Target Start/End: Original strand, 21907744 - 21907848
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 404  Q
    |||||||||| |||||||||||||||||||  |||||||||||||| ||||||||||||| |||||||||||||||| ||||| |||||| ||||||| |    
T  21907744 gcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaaagttggggttccgctcgctaa 21907843  T
Q  405 cggtt 409  Q
    |||||    
T  21907844 cggtt 21907848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 23169294 - 23168973
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    |||| ||||||||| ||||||||||  || | ||||||| |||||||| |||||| || || ||  || |||||||||| |||| | |||| | ||||||    
T  23169294 aacccgtgtatatccacatacaactccactaatacatatatttcatataacttactactccgcaactcaaacaatccagcacatacacaatcatttataa 23169195  T
Q  112 ttatgcacatacatcaatttcattcaa--tgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatca 209  Q
    |||||| ||||||||| |  ||||| |  ||| ||||| | |||| ||||||||||||||  ||||||||||||| | ||||||||||||| | ||||||    
T  23169194 ttatgcgcatacatcattcacattccacatgttatatacattcacatgatttcatactcaaacatctccaaaattcattaacatcaaccaa-tgcgatca 23169096  T
Q  210 tcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagca 307  Q
     ||||| ||| ||||||| | ||  ||||||||||||| ||||| ||||||||||| | |||||||||| | ||||||| |||||| | | ||| || ||    
T  23169095 ccagagtgttctagtaggatcctaatacctatacaagggttatacaagttgaaagaaacattttagaatacccaaaagggtcccct-agtacacgaaaca 23168997  T
Q  308 aagttcagaaagtggctgactaag 331  Q
    |  ||||||||| |||||||||||    
T  23168996 attttcagaaagaggctgactaag 23168973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 23580551 - 23580230
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    |||| ||||||||| ||||||||||  || | ||||||| |||||||| |||||| || || ||  || |||||||||| |||| | |||| | ||||||    
T  23580551 aacccgtgtatatccacatacaactccactaatacatatatttcatataacttactactccgcaactcaaacaatccagcacatacacaatcatttataa 23580452  T
Q  112 ttatgcacatacatcaatttcattcaa--tgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatca 209  Q
    |||||| ||||||||| |  ||||| |  ||| ||||| | |||| ||||||||||||||  ||||||||||||| | ||||||||||||| | ||||||    
T  23580451 ttatgcgcatacatcattcacattccacatgttatatacattcacatgatttcatactcaaacatctccaaaattcattaacatcaaccaa-tgcgatca 23580353  T
Q  210 tcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagca 307  Q
     ||||| ||| ||||||| | ||  ||||||||||||| ||||| ||||||||||| | |||||||||| | ||||||| |||||| | | ||| || ||    
T  23580352 ccagagtgttctagtaggatcctaatacctatacaagggttatacaagttgaaagaaacattttagaatacccaaaagggtcccct-agtacacgaaaca 23580254  T
Q  308 aagttcagaaagtggctgactaag 331  Q
    |  ||||||||| |||||||||||    
T  23580253 attttcagaaagaggctgactaag 23580230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 295 - 409
Target Start/End: Complemental strand, 23102150 - 23102036
Alignment:
Q  295 aatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc 394  Q
    ||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||||| | ||||||||| || || ||||||||||||||| |||||||    
T  23102150 aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtccagttcgcttaagtgatcggcttacagtaagtctgggttc 23102051  T
Q  395 agctcgcttacggtt 409  Q
     ||||||||||||||    
T  23102050 tgctcgcttacggtt 23102036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 279 - 418
Target Start/End: Original strand, 29281336 - 29281475
Alignment:
Q  279 ctcaaaaggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggctta 378  Q
    |||||||||  |||| | ||||| |||||| |||||||||  ||||||||||    || ||||||||||||||||||||||||||| ||||||| |||||    
T  29281336 ctcaaaaggatcccttagtgcacgaagcaaggttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagttcgcttaagcgaccagctta 29281435  T
Q  379 cagtaagtttgggttcagctcgcttacggtttgctcacgg 418  Q
    ||||| || ||||||||| |||||||||| | ||||||||    
T  29281436 cagtaggtctgggttcagttcgcttacgggtcgctcacgg 29281475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 341 - 449
Target Start/End: Original strand, 9978 - 10086
Alignment:
Q  341 gcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgac 440  Q
    |||||||||||||||||||||||| ||||||| |||||||||| || ||||||||| |||||||||| | |||||||| |||||| |||||| |  || |    
T  9978 gcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattcttggc 10077  T
Q  441 agaatcaaa 449  Q
    |||||||||    
T  10078 agaatcaaa 10086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 238 - 394
Target Start/End: Original strand, 24660876 - 24661032
Alignment:
Q  238 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 336  Q
    ||||||| | ||||| ||||||||||| | |||||| ||||||||||||| |||||| | ||||| ||| ||| |||| ||||||||||||||||  |      
T  24660876 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccct-agtgcacgaagtaaaattcaaaaagtggctgactaagacctt 24660974  T
Q  337 cttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc 394  Q
    ||| ||||||||||||||| | |||||| ||||||||||| |||| ||||| ||||||    
T  24660975 ctttgcttaagcgacggctggctcgcttaagcgaccggctcacagaaagttggggttc 24661032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 449
Target Start/End: Complemental strand, 25181557 - 25181446
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||| || ||||||||| || ||||||| | |||||||| |||||| |||||| |  |    
T  25181557 ttcgcttaagcgacggctagtttgcttaagcgaccagcttacagtaggtctgggttcagttcacttacgggtcgctcacggctcgcttaagcgaattctt 25181458  T
Q  438 gacagaatcaaa 449  Q
    | ||||||||||    
T  25181457 ggcagaatcaaa 25181446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 236 - 433
Target Start/End: Original strand, 26884503 - 26884701
Alignment:
Q  236 cctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtc 334  Q
    ||||||||||  ||||| ||| | ||||| | |||| | ||| ||||||||| |||||| | ||||| |||||| |||||||||| ||||||||||||      
T  26884503 cctatacaagagttatacaagctaaaagaaacatttaaaaatactcaaaagggtcccct-agtgcacgaagcaaggttcagaaagaggctgactaaggct 26884601  T
Q  335 cacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc-agctcgcttacggtttgctcacggttcgcttgagcgaac 433  Q
    || ||||||||||||| || ||| |||||| ||||||| ||  |||  | |||  |||||  ||||||| |||||| |||||| ||||||||||||||||    
T  26884602 cagttcgcttaagcgaagggtagctcgcttaagcgaccagcacacaaaaggttgaggttctcgctcgctcacggttagctcacagttcgcttgagcgaac 26884701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 248 - 351
Target Start/End: Original strand, 23264421 - 23264524
Alignment:
Q  248 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 346  Q
    ||||| ||||||||||  | |||| | ||||||||||||| |||||| | ||||| | |||||||||| |||||||||||||||||||  ||||||||||    
T  23264421 ttatacaagttgaaaggaacatttaaaaatgctcaaaaggatcccct-agtgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaa 23264519  T
Q  347 gcgac 351  Q
    |||||    
T  23264520 gcgac 23264524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 471
Target Start/End: Original strand, 23264557 - 23264613
Alignment:
Q  415 acggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 471  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||||| || |||||    
T  23264557 acggttcgcttgagcgaacttctgacataatgaaaatgatttttcgcttacgggttc 23264613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 20914321 - 20914263
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||||| ||| || ||||| | | ||||||||||||||||||||    
T  20914321 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccccaca 20914263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 387
Target Start/End: Complemental strand, 27208408 - 27208318
Alignment:
Q  297 tgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt 387  Q
    ||||| || ||| |||||||||  ||||||||||||  || ||||||||||||| || ||| |||||| ||||||| ||| |||| |||||    
T  27208408 tgcacgaaacaaggttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaaagtt 27208318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 387
Target Start/End: Complemental strand, 27210743 - 27210653
Alignment:
Q  297 tgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt 387  Q
    ||||| || ||| |||||||||  ||||||||||||  || ||||||||||||| || ||| |||||| ||||||| ||| |||| |||||    
T  27210743 tgcacgaaacaaggttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacagaaagtt 27210653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 14563981 - 14564013
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacata 49  Q
    |||||||||||||||||||||| ||||||||||    
T  14563981 tgtgtatatctacatacaacttgaccatacata 14564013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 17 - 471
Target Start/End: Original strand, 18914193 - 18914646
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataattatg 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||| | ||||||||||||||||||    
T  18914193 tgtgtatatctacatacaacttaacaatacatatgtttcatatgacttacaactccgcaattccaacaatccagaacatacacaattaattataattatg 18914292  T
Q  117 cacatacatcaatttcattcaatgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatcatcagagc 216  Q
    | ||||||||||||||||||||  ||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||| | ||||| ||||  ||||     
T  18914293 ctcatacatcaatttcattcaacataatatatattcacttgatttcatactcaatcatctccaaaattcactaacatcaa-ctaattccatcaatagagt 18914391  T
Q  217 g-tttagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagc-aaagttc 313  Q
    | ||||||||| || || |   |||| || | ||||| |||||| |||| ||||| |   |||||||||||| |||||| ||||||| | || ||| |||    
T  18914392 gttttagtaggattatg-tgtatatataaaggttatacaagttggaagaaatattattatatgctcaaaaggatcccct-aatgcacgaggcaaaaattc 18914489  T
Q  314 agaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgct 413  Q
    | |||||||||||||||||||  |||||||||||||| |||  |||||||| ||||||||||||| ||  |||| |||||| ||||||| | |||| |||    
T  18914490 a-aaagtggctgactaaggtcatcttcgcttaagcgatggcaggttcgcttaagcgaccggcttatagagagttggggttccgctcgctaaaggttcgct 18914588  T
Q  414 cacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 471  Q
      |||||| ||| |||||||||||| ||||||  || || ||||||||| || |||||    
T  18914589 tgcggttcacttaagcgaacttctggcagaatggaattgatttttcgcttacgggttc 18914646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 14 - 465
Target Start/End: Complemental strand, 41456142 - 41455687
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    |||||||||||||||||||||||| ||| | | ||||||||||||||||||||| || ||  |  || |||||| |||||||| | |||||| |||||||    
T  41456142 acctgtgtatatctacatacaactcaactaatgcatatgtttcatatgacttactactccgtaactcaaacaattcagaacattcacaattatttataat 41456043  T
Q  113 tatgcacatacatcaatttcattcaat-gtaatatataatcacttgat-ttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatcat 210  Q
    ||||| | ||||||||||||||||||| ||  |||||  |||||| || ||| |||||| | |||||||| ||||||||||| ||| ||| ||||||       
T  41456042 tatgcgcttacatcaatttcattcaatagttgtatat--tcacttaatcttcctactcaattatctccaacatttactaacaccaatcaa-ttcgattgc 41455946  T
Q  211 cagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatatttta-gaatgctcaaaaggtcccctcaatgcacaaagcaa 308  Q
    |||   ||| ||||||| ||||| ||||||||| ||||||||| ||||| ||||||  | || | ||| |||||  | ||||||||| ||||| ||||||    
T  41455945 cagcttgttctagtaggattctgatacctatactaggattatacaagtt-aaagaggaagttaaagaacgctcaggaagtcccctca-tgcactaagcaa 41455848  T
Q  309 -agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt-tgggttcagctcgcttacg 406  Q
     ||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||||| |||||||||    
T  41455847 cagttcagaaaaaggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacg 41455748  T
Q  407 gtttgctcacggttcgcttgagcgaacttctgacagaatcaaaa--tggtttttcgctcac 465  Q
    | | |||||||||||||||||||||||||  |||||||||||||  |||||||||||||||    
T  41455747 ggtcgctcacggttcgcttgagcgaactttggacagaatcaaaaattggtttttcgctcac 41455687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 319 - 465
Target Start/End: Original strand, 24192272 - 24192418
Alignment:
Q  319 gtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacgg 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||||||| ||||||||    
T  24192272 gtggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttcaactcacttacggttcgctcacgg 24192371  T
Q  419 ttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24192372 ttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 24192418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 275 - 409
Target Start/End: Complemental strand, 16802175 - 16802041
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 373  Q
    ||||||||||||| |||||| ||||||  | |||||||||| ||||||||| ||||||||| ||||||||||| |||||||||| |||||| ||||||||    
T  16802175 aatgctcaaaagggtcccct-aatgcatgaggcaaagttcaaaaagtggctaactaaggtcaacttcgcttaaacgacggctagctcgcttaagcgaccg 16802077  T
Q  374 gcttacagtaagtttgggttcagctcgcttacggtt 409  Q
    ||||||||||||| ||||||| ||||||||||||||    
T  16802076 gcttacagtaagtctgggttctgctcgcttacggtt 16802041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 234 - 407
Target Start/End: Complemental strand, 13324549 - 13324376
Alignment:
Q  234 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaagg 332  Q
    ||||||||||||| ||||||||| ||||||| | || || |||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||    
T  13324549 tacctatacaagggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccct-aatgcacgaagcaaaattcagaaagtggctgactaagg 13324451  T
Q  333 tccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacgg 407  Q
      ||  |||||||||||| |||| | |||||| |||||| ||||| ||| |||||||||||  ||||||| ||||    
T  13324450 ctcagctcgcttaagcgaaggctggctcgcttaagcgactggcttgcagaaagtttgggttttgctcgctgacgg 13324376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 305 - 409
Target Start/End: Complemental strand, 55499804 - 55499700
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 404  Q
    |||| ||||| |||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||||||||| | ||||| |||||||||    
T  55499804 gcaacgttcaaaaagtggctgactaagatcaacttcgcttaagcgacgtctagttcgcttaagcgaccggcttacagtaagtctaggttctgctcgctta 55499705  T
Q  405 cggtt 409  Q
    |||||    
T  55499704 cggtt 55499700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 351
Target Start/End: Complemental strand, 13302961 - 13302844
Alignment:
Q  234 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaagg 332  Q
    ||||||||||||| ||||||||| ||||||| | || || |||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||    
T  13302961 tacctatacaagggttatataagctgaaagaaacatctttgaatgctcaaaagggtcccct-aatgcacgaagcaaaattcagaaagtggctgactaagg 13302863  T
Q  333 tccacttcgcttaagcgac 351  Q
      ||  |||||||||||||    
T  13302862 ctcagctcgcttaagcgac 13302844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 432
Target Start/End: Original strand, 14865184 - 14865338
Alignment:
Q  279 ctcaaaaggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcga-cggctagttcgcttgagcgaccggctt 377  Q
    |||||||||  |||| | ||||| |||||| |||||||||  ||||||||||    || ||||||||||||| |||||||||||||| ||||||| ||||    
T  14865184 ctcaaaaggatcccttagtgcacgaagcaaggttcagaaaaaggctgactaacactcagttcgcttaagcgaacggctagttcgcttaagcgaccagctt 14865283  T
Q  378 acagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaa 432  Q
    | |||| || ||||||||| |||||||||| | |||||||| |||||| ||||||    
T  14865284 agagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaa 14865338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 355 - 471
Target Start/End: Complemental strand, 17241201 - 17241085
Alignment:
Q  355 tagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggt 454  Q
    |||||||||| |||||||| |||| ||  |||| |||||| ||||||| |||||| |||  |||||||||||||||||||||||||||||| ||| || |    
T  17241201 tagttcgcttaagcgaccgacttatagagagttggggttccgctcgctgacggttcgcttgcggttcgcttgagcgaacttctgacagaatgaaattgat 17241102  T
Q  455 ttttcgctcacaggttc 471  Q
    |||||||| || |||||    
T  17241101 ttttcgcttacgggttc 17241085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 234 - 351
Target Start/End: Complemental strand, 13313637 - 13313520
Alignment:
Q  234 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaagg 332  Q
    ||||||||||||| ||||||||| ||||||| | || ||  ||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||    
T  13313637 tacctatacaagggttatataagctgaaagaaacatctttaaatgctcaaaagggtcccct-aatgcacgaagcaaaattcagaaagtggctgactaagg 13313539  T
Q  333 tccacttcgcttaagcgac 351  Q
      ||  |||||||||||||    
T  13313538 ctcagctcgcttaagcgac 13313520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 18136177 - 18136117
Alignment:
Q  78 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 138  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||    
T  18136177 tccaacaatccagaacatacacaattaattataattatgctcatacatcaatttcattcaa 18136117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 18136306 - 18136253
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatg-tttcatatgacttacaac 69  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  18136306 tgtgtatatctacatacaacttaaccatgcatatgttttcatatgacttacaac 18136253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 18129792 - 18129733
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacata-tgtttcatatgacttacaaccccaca 75  Q
    |||||||||||||||||||||||||||| |||| | |||||||||||||||||| |||||    
T  18129792 tgtgtatatctacatacaacttaaccatgcatattttttcatatgacttacaactccaca 18129733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 467
Target Start/End: Complemental strand, 10390104 - 10390034
Alignment:
Q  398 tcgcttacggtttgctcacg-gttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacag 467  Q
    ||||| |||||| ||||||  ||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  10390104 tcgctcacggttcgctcacaagttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10390034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 467
Target Start/End: Complemental strand, 10415193 - 10415123
Alignment:
Q  398 tcgcttacggtttgctcacg-gttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacag 467  Q
    ||||| |||||| ||||||  ||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  10415193 tcgctcacggttcgctcacaagttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10415123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 467
Target Start/End: Complemental strand, 10421863 - 10421793
Alignment:
Q  398 tcgcttacggtttgctcacg-gttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacag 467  Q
    ||||| |||||| ||||||  ||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  10421863 tcgctcacggttcgctcacaagttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacag 10421793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 275 - 359
Target Start/End: Complemental strand, 17243343 - 17243260
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagtt 359  Q
    ||||||||||||| |||||| | ||||| | |||||||||| |||||||||||||||||||  |||||||||||||| ||||||||    
T  17243343 aatgctcaaaaggatcccct-agtgcacgaggcaaagttca-aaagtggctgactaaggtcatcttcgcttaagcgatggctagtt 17243260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 18129663 - 18129607
Alignment:
Q  78 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcat 134  Q
    ||||||||| |||||||| | ||||||||||||||||||| | ||||||||||||||    
T  18129663 tccaacaattcagaacattcacaattaattataattatgctcgtacatcaatttcat 18129607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 13036973 - 13036915
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||||| ||| || ||||| | | ||||||||||||||||||||    
T  13036973 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccccaca 13036915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 31690586 - 31690553
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatat 50  Q
    ||||||||||||||||||||| ||||||||||||    
T  31690586 tgtgtatatctacatacaactcaaccatacatat 31690553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 31943629 - 31943662
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatat 50  Q
    ||||||||||||||||||||| ||||||||||||    
T  31943629 tgtgtatatctacatacaactcaaccatacatat 31943662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 19344171 - 19344139
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacata 49  Q
    |||||||||||||||||||||| ||||||||||    
T  19344171 tgtgtatatctacatacaacttgaccatacata 19344139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 13 - 402
Target Start/End: Original strand, 2747 - 3136
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| || || ||  || |||||||||||||||   |||||| ||||||    
T  2747 aacctgtgtatatctacatacaactcaactaatacatatgtttcatatgacttactactccgcaactcaaacaatccagaacatagacaattatttataa 2846  T
Q  112 ttatgcacatacatcaatttcattcaatgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatcatc 211  Q
    |||||| |||||||||| ||||||||||  | |||||| |||| |||||||| ||||| |||||||||| ||| ||||||||||||||| |||||||| |    
T  2847 ttatgcgcatacatcaaattcattcaata-attatatattcacatgatttcaaactcaatcatctccaatattcactaacatcaaccaa-ttcgatcacc 2944  T
Q  212 agagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaaggtcccctcaatgcacaaagcaaa- 309  Q
     |   ||| |||| || ||||| ||||||||||||| ||||| ||||| || || |||||||||||||||||| | ||||||||  ||||| |||||||     
T  2945 ggcttgttctagtgggattctggtacctatacaagggttatacaagttaaaggaaatattttagaatgctcaagaagtcccctcg-tgcacgaagcaaaa 3043  T
Q  310 gttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgct 402  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||  |||||||    
T  3044 gttcagaaagaggctgactaaggctcacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaggtctgggtttcgctcgct 3136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 433
Target Start/End: Original strand, 3181 - 3217
Alignment:
Q  397 ctcgcttacggtttgctcacggttcgcttgagcgaac 433  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  3181 ctcgcttacggttcgctcacggttcgcttaagcgaac 3217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 13 - 465
Target Start/End: Complemental strand, 29615195 - 29614738
Alignment:
Q  13 aacctgtgtatatctacatacaacttaaccat-acatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    |||||||||||||||||||||||||  || || ||||||||||||||||||||||  | || ||  || ||||||||||||||| | |||||| ||||||    
T  29615195 aacctgtgtatatctacatacaactcgactattacatatgtttcatatgacttactgctccgcaactc-aacaatccagaacatacacaattatttataa 29615097  T
Q  112 ttatgcacatacatcaatttcattcaa--tgtaatatataa------tcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaatt 203  Q
    |||| |||||||||||||  ||||| |  ||| |||||||       ||||||| ||||||||||| |||||||||| ||||||||||| ||| ||| ||    
T  29615096 ttattcacatacatcaatcacattccacatgttatatatacacatattcacttgttttcatactcaatcatctccaacatttactaacaccaatcaa-tt 29614998  T
Q  204 cgatcatcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaaggtcccctcaatgcaca 302  Q
    | |||| | |  |||| || || | ||||| ||||||| | ||| |||||  |||| || || ||||| |||||||||||| | || |||||| |||||     
T  29614997 caatcaccggctcgttctaataagattctgttacctatgccagggttatactagttaaaggaaatattatagaatgctcaagaagttccctca-tgcacg 29614899  T
Q  303 aagcaaa-gttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgc 401  Q
    || |||| ||||||||   ||||||||||||  |||||||||||||||||||||||||||||| |||||||| ||||||||| || ||||||||||||||    
T  29614898 aaacaaaagttcagaa---ggctgactaaggctcacttcgcttaagcgacggctagttcgcttaagcgaccgacttacagtaggtctgggttcagctcgc 29614802  T
Q  402 ttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 465  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29614801 ttacgggttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 29614738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 273 - 468
Target Start/End: Original strand, 12167637 - 12167832
Alignment:
Q  273 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 371  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  12167637 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgac 12167734  T
Q  372 cggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    | |||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  12167735 cagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 12167832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 273 - 468
Target Start/End: Original strand, 19286546 - 19286741
Alignment:
Q  273 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 371  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  19286546 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgac 19286643  T
Q  372 cggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    | |||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  19286644 cagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19286741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 273 - 466
Target Start/End: Original strand, 19877730 - 19877923
Alignment:
Q  273 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 371  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  19877730 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgac 19877827  T
Q  372 cggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcaca 466  Q
    | |||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||    
T  19877828 cagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcaca 19877923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 273 - 468
Target Start/End: Original strand, 19883506 - 19883701
Alignment:
Q  273 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 371  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||| | |||||| |||||||||||||||||||||||||||||| ||||||    
T  19883506 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctaattaaggttcacttcgcttaagcgacggctagttcgcttaagcgac 19883603  T
Q  372 cggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    | |||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  19883604 cagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19883701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 321 - 468
Target Start/End: Complemental strand, 34640723 - 34640575
Alignment:
Q  321 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggt 419  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| | | |||| |||| |||||||||| | |||||||||    
T  34640723 ggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacggt 34640624  T
Q  420 tcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  34640623 tcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 34640575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 321 - 468
Target Start/End: Complemental strand, 34647397 - 34647249
Alignment:
Q  321 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggt 419  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| | | |||| |||| |||||||||| | |||||||||    
T  34647397 ggctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacggt 34647298  T
Q  420 tcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  34647297 tcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 34647249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 273 - 468
Target Start/End: Complemental strand, 19786650 - 19786455
Alignment:
Q  273 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 371  Q
    |||| |||||| | ||||||||| ||||  |||||| ||||||||||  |||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  19786650 agaacgctcaagaagtcccctca-tgcattaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgac 19786553  T
Q  372 cggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    | |||||||||| ||| ||||||||  |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  19786552 cagcttacagtaggttctgggttcacttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 19786455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 308 - 468
Target Start/End: Complemental strand, 25470451 - 25470290
Alignment:
Q  308 aagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt-tgggttcagctcgcttacg 406  Q
    |||||||||||  ||||||||||||| |||||||||||||||||| ||||||||||| |||||||  ||||||||| ||| |||| |||| |||||||||    
T  25470451 aagttcagaaaaaggctgactaaggttcacttcgcttaagcgacgtctagttcgcttaagcgaccaacttacagtaggttctgggctcagttcgcttacg 25470352  T
Q  407 gtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    | | |||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  25470351 ggtcgctcacggttcgcttgagcgaattttggacagaatcaaaatggtttttcgctcacagg 25470290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 21365195 - 21365067
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||||||||||||||||||||      
T  21365195 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttg 21365096  T
Q  438 gacagaatcaaaatggtttttcgctcaca 466  Q
    |||||||||||||||||||||||||||||    
T  21365095 gacagaatcaaaatggtttttcgctcaca 21365067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 23969177 - 23969049
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||||||||||||||||||||      
T  23969177 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttg 23969078  T
Q  438 gacagaatcaaaatggtttttcgctcaca 466  Q
    |||||||||||||||||||||||||||||    
T  23969077 gacagaatcaaaatggtttttcgctcaca 23969049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 243 - 409
Target Start/End: Original strand, 18799754 - 18799920
Alignment:
Q  243 aaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcg 341  Q
    |||| ||||| ||||||||||  | || || ||||||| |||||| |||||| ||||||  | |||||||||| ||||||||||||||||||  ||||||    
T  18799754 aagggttatacaagttgaaaggaacatgtttgaatgctaaaaagggtcccct-aatgcatgaggcaaagttcaaaaagtggctgactaaggttgacttcg 18799852  T
Q  342 cttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtt 409  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||    
T  18799853 cttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttccgctcgcttacggtt 18799920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 94 - 409
Target Start/End: Original strand, 25396340 - 25396654
Alignment:
Q  94 atgcccaattaattataattatgcacatacatcaatttcattcaatgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacat 193  Q
    |||| |||||||| ||||| || |  || |||||| |||||||||  || |||||| ||||||| ||||||||||| |||| ||||||||| |||||  |    
T  25396340 atgcacaattaataataatcatactaatgcatcaagttcattcaacctagtatatattcacttggtttcatactcaatcatatccaaaattcactaaatt 25396439  T
Q  194 caaccaaattcgatcatcagagcgttt-agtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tccc 291  Q
    ||||||| |||||| | ||  | |||| |||||| ||| | | | ||||||||| ||||| ||||||||||| | |||||||||||||||||||| | ||    
T  25396440 caaccaa-ttcgattaccaatgtgtttcagtaggattcag-tgcatatacaagggttatacaagttgaaagaaacattttagaatgctcaaaaggattcc 25396537  T
Q  292 ctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttggg 391  Q
    || | ||||| ||||| | |||| ||||||| ||||||||  | |||||||||||||||||||| | |||||| |||||||| |||||||  |||| |||    
T  25396538 ct-agtgcactaagcataattcaaaaagtggttgactaagacctacttcgcttaagcgacggctggctcgcttaagcgaccgacttacagagagttgggg 25396636  T
Q  392 ttcagctcgcttacggtt 409  Q
    ||| ||||||| ||||||    
T  25396637 ttccgctcgctaacggtt 25396654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 275 - 409
Target Start/End: Complemental strand, 21565899 - 21565765
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 373  Q
    ||||||||||||| || ||| ||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||||| | ||||||||| ||||||||    
T  21565899 aatgctcaaaagggtctcct-aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtccagttcgcttaagcgaccg 21565801  T
Q  374 gcttacagtaagtttgggttcagctcgcttacggtt 409  Q
    ||||||||||||| ||||||| ||||||||||||||    
T  21565800 gcttacagtaagtctgggttctgctcgcttacggtt 21565765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 248 - 438
Target Start/End: Complemental strand, 19472080 - 19471891
Alignment:
Q  248 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 346  Q
    ||||| |||||||| || | |||| | ||||||||||||| |||||| | ||||| ||||||| |||| |||||||||||| |||  |  ||||||||||    
T  19472080 ttatacaagttgaaggaaacatttcaaaatgctcaaaaggatcccct-agtgcacgaagcaaaattcaaaaagtggctgac-aagaccttcttcgcttaa 19471983  T
Q  347 gcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctg 438  Q
    |||| |||| | |||||| ||||||||||| |||| ||||| |||||| ||||||| |||| | |||  |||||||||| ||||||||||||    
T  19471982 gcgatggctggctcgcttaagcgaccggctcacagaaagttggggttccgctcgctaacggctcgcttgcggttcgcttaagcgaacttctg 19471891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 449
Target Start/End: Complemental strand, 20008604 - 20008493
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||||| || ||||||||| |||||||||| | |||||||| |||||| |||||| |  |    
T  20008604 ttcgcttaagcaacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattctt 20008505  T
Q  438 gacagaatcaaa 449  Q
    | ||||||||||    
T  20008504 ggcagaatcaaa 20008493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 12167420 - 12167535
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  12167420 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 12167518  T
Q  113 tatgcacatacatcaat 129  Q
    |||||||||||||||||    
T  12167519 tatgcacatacatcaat 12167535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 19877513 - 19877628
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  19877513 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 19877611  T
Q  113 tatgcacatacatcaat 129  Q
    |||||||||||||||||    
T  19877612 tatgcacatacatcaat 19877628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 19883289 - 19883404
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  19883289 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 19883387  T
Q  113 tatgcacatacatcaat 129  Q
    |||||||||||||||||    
T  19883388 tatgcacatacatcaat 19883404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 19286329 - 19286444
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    ||||||||||||||||||||||||  |||| ||||||||| | ||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  19286329 acctgtgtatatctacatacaactcgaccactacatatgtataatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 19286427  T
Q  113 tatgcacatacatcaat 129  Q
    |||||||||||||||||    
T  19286428 tatgcacatacatcaat 19286444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 19786866 - 19786751
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    ||||||||||||||||||||||||  || | ||||||||| ||||||||||||| || ||| |  || ||||||||||| | | | |||||| |||||||    
T  19786866 acctgtgtatatctacatacaactcgactactacatatgtatcatatgacttactactccataactcaaacaatccaga-cttacacaattatttataat 19786768  T
Q  113 tatgcacatacatcaat 129  Q
    |||||||||||||||||    
T  19786767 tatgcacatacatcaat 19786751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 351
Target Start/End: Original strand, 9186827 - 9186903
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgac 351  Q
    ||||||||||||| |||||| | ||||| |||||||||||| |||||||||||||||||||  |||||||||||||||    
T  9186827 aatgctcaaaaggatcccct-agtgcacgaagcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgac 9186903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 414
Target Start/End: Complemental strand, 19300495 - 19300317
Alignment:
Q  236 cctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtc 334  Q
    ||||||||||| ||||| ||| | ||||| | | || | ||| ||||||||| |||||| | ||||| |||||||||||||| || ||||||||||||      
T  19300495 cctatacaagggttatacaagctaaaagaaacacttaaaaatactcaaaagggtcccct-agtgcacgaagcaaagttcagatagaggctgactaaggct 19300397  T
Q  335 cacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc-agctcgcttacggtttgctc 414  Q
    ||  |||||||||||| || ||| |||||| ||||||| || ||||| |||||||| |||  ||||||| |||||| ||||    
T  19300396 catctcgcttaagcgaagggtagctcgcttaagcgaccagc-tacaggaagtttggattctcgctcgctcacggttcgctc 19300317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 351
Target Start/End: Complemental strand, 24513553 - 24513456
Alignment:
Q  254 aagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgac 351  Q
    ||||||||||  | |||| | ||||||||||||| |||||| | ||||| | |||| ||||| |||||||||||||||||||  |||||||||||||||    
T  24513553 aagttgaaaggaacatttaaaaatgctcaaaaggatcccct-agtgcacgaggcaaggttcaaaaagtggctgactaaggtcatcttcgcttaagcgac 24513456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 415 - 468
Target Start/End: Complemental strand, 24513423 - 24513370
Alignment:
Q  415 acggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    ||||||||||||||||||||||||  ||||| |||||| ||||||||| |||||    
T  24513423 acggttcgcttgagcgaacttctggaagaatgaaaatgatttttcgcttacagg 24513370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 23105384 - 23105440
Alignment:
Q  19 tgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||| ||| || ||||| | | ||||||||||||||||||||    
T  23105384 tgtatatctacatacaactgaacaatgcatatatataatatgacttacaaccccaca 23105440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 19439888 - 19439921
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatat 50  Q
    ||||||||||||||||||||| ||||||||||||    
T  19439888 tgtgtatatctacatacaactcaaccatacatat 19439921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 24513469 - 24513425
Alignment:
Q  358 ttcgcttgagcgaccggcttacagtaagtttgggttcagctcgct 402  Q
    ||||||| ||||||||||| |||| |||||||||||| |||||||    
T  24513469 ttcgcttaagcgaccggctcacagaaagtttgggttccgctcgct 24513425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 319 - 465
Target Start/End: Complemental strand, 15123 - 14977
Alignment:
Q  319 gtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacgg 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  15123 gtggctgactaaggtccacttcgcttaagcgacggctagttcgcttaagcgaccggcttacagtaagtctgggttcagctcgcttacggttcgctcacgg 15024  T
Q  419 ttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15023 ttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 14977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 234 - 465
Target Start/End: Original strand, 13742945 - 13743174
Alignment:
Q  234 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaaggtcccctcaatgcacaaagcaaa-gttcagaaagtggctgactaagg 332  Q
    |||||| || ||| |||||  |||| ||||| ||||| |||||||||||| | ||||||||| ||||| || |||| ||||||||   ||||||||||||    
T  13742945 tacctacaccagggttatactagttaaaagaaatattatagaatgctcaagaagtcccctca-tgcacgaaacaaaagttcagaa---ggctgactaagg 13743040  T
Q  333 tccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaa 432  Q
      |||||||||||||||||||||||||||||| ||||||||||||| |||| || |||||||||||||||||||| | ||||||||||||||||||||||    
T  13743041 ctcacttcgcttaagcgacggctagttcgcttaagcgaccggcttatagtaggtctgggttcagctcgcttacgggtcgctcacggttcgcttgagcgaa 13743140  T
Q  433 cttctgacagaatc-aaaatggtttttcgctcac 465  Q
    |||  ||||||||| ||||| |||||||||||||    
T  13743141 ctttggacagaatcaaaaattgtttttcgctcac 13743174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 273 - 468
Target Start/End: Original strand, 13006706 - 13006901
Alignment:
Q  273 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 371  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  13006706 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgac 13006803  T
Q  372 cggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    | |||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  13006804 cagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 13006901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 272 - 465
Target Start/End: Complemental strand, 13123698 - 13123506
Alignment:
Q  272 tagaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcga 370  Q
    |||||||||||| | ||||||||| ||||| ||| || ||||||||||  |||||||||||   ||||||||||||||||||||||| |||||| |||||    
T  13123698 tagaatgctcaagaagtcccctca-tgcactaagtaatagttcagaaaa-ggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcga 13123601  T
Q  371 ccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 465  Q
    ||  ||||||||| || ||||||||| |||||||||| | |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  13123600 ccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 13123506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 322 - 468
Target Start/End: Complemental strand, 12591377 - 12591230
Alignment:
Q  322 gctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggtt 420  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||| | | |||| |||| |||||||||| | ||||||||||    
T  12591377 gctgactaaggttcacttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggatctgggatcagttcgcttacgggtcgctcacggtt 12591278  T
Q  421 cgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    |||||||||||| ||  |||||||||||||||||||||||||||||||    
T  12591277 cgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 12591230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 248 - 471
Target Start/End: Original strand, 13678772 - 13678995
Alignment:
Q  248 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 346  Q
    ||||| || |||||||| | |||||  ||||||||||||| |||||| ||||||| | |||||||||| |||||||||||||||||||  ||||||||||    
T  13678772 ttatacaaattgaaagaaacattttttaatgctcaaaaggatcccct-aatgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaa 13678870  T
Q  347 gcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatc 446  Q
    ||||||||| |||||||| ||||||||||||||||  |||| |||||   |||||| ||| || |||  |||||||||| |||||||||||||||||||     
T  13678871 gcgacggctggttcgcttaagcgaccggcttacagagagttggggtttccctcgctaacgtttcgcttgcggttcgcttaagcgaacttctgacagaatg 13678970  T
Q  447 aaaatggtttttcgctcacaggttc 471  Q
     ||||| ||||||||| || |||||    
T  13678971 gaaatgatttttcgcttacgggttc 13678995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 275 - 471
Target Start/End: Original strand, 16676660 - 16676845
Alignment:
Q  275 aatgctcaaaa-ggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 373  Q
    ||||||||||| |||||||| ||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  16676660 aatgctcaaaagggtcccct-aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgactagttcgcttaagcgaccg 16676758  T
Q  374 gcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 471  Q
    ||||||||||||| ||||||| ||||||||           | |||||||||||||||| |  |||||||||||||||||||||||||| ||||||||    
T  16676759 gcttacagtaagtctgggttccgctcgctt-----------atggttcgcttgagcgaattcttgacagaatcaaaatggtttttcgcttacaggttc 16676845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 275 - 471
Target Start/End: Original strand, 17650896 - 17651081
Alignment:
Q  275 aatgctcaaaa-ggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 373  Q
    ||||||||||| |||||||| ||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  17650896 aatgctcaaaagggtcccct-aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgactagttcgcttaagcgaccg 17650994  T
Q  374 gcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 471  Q
    ||||||||||||| ||||||| ||||||||           | |||||||||||||||| |  |||||||||||||||||||||||||| ||||||||    
T  17650995 gcttacagtaagtctgggttccgctcgctt-----------atggttcgcttgagcgaattcttgacagaatcaaaatggtttttcgcttacaggttc 17651081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 272 - 465
Target Start/End: Complemental strand, 12710627 - 12710435
Alignment:
Q  272 tagaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcga 370  Q
    |||||||||||| | ||||||||| ||||| ||| || ||||||||||  |||||||||||   ||||||||||||||||||||||| |||||| |||||    
T  12710627 tagaatgctcaagaagtcccctca-tgcactaagtaatagttcagaaaa-ggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcga 12710530  T
Q  371 ccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 465  Q
    ||  ||||||||| || ||||||||| |||||||| | | |||||||||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  12710529 ccaacttacagtaggtctgggttcagttcgcttacaggtcgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttggctcac 12710435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 3858082 - 3857953
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||||||||||||||||||||      
T  3858082 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttg 3857983  T
Q  438 gacagaatc-aaaatggtttttcgctcaca 466  Q
     |||||||| ||||||||||||||||||||    
T  3857982 aacagaatcaaaaatggtttttcgctcaca 3857953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 305 - 409
Target Start/End: Complemental strand, 11390026 - 11389922
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 404  Q
    |||||||||| |||||||||||||||||||  ||||||||||||||||||||| |||||| |||||||| || ||||||||| ||||||| |||||||||    
T  11390026 gcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctagctcgcttaagcgaccgactcacagtaagtctgggttccgctcgctta 11389927  T
Q  405 cggtt 409  Q
    |||||    
T  11389926 cggtt 11389922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 305 - 449
Target Start/End: Complemental strand, 20311740 - 20311597
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 404  Q
    |||||||||| ||||||||| ||| |||||  ||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||||| |||||||||    
T  20311740 gcaaagttca-aaagtggctaactgaggtcatcttcgcttaagcgacggctagctcgcttaagcgaccggcttgcagtaagtctgggttctgctcgctta 20311642  T
Q  405 cggtttgctcacggttcgcttgagcgaacttctgacagaatcaaa 449  Q
    ||||| |||  |||||||||| |||||| |  || ||||||||||    
T  20311641 cggttcgcttgcggttcgcttaagcgaattcttggcagaatcaaa 20311597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 254 - 443
Target Start/End: Original strand, 46625275 - 46625464
Alignment:
Q  254 aagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacg 352  Q
    ||||||||||| | |||||| ||||||||||||| | |||| | ||||| || |||| |||| | ||||||||||||||  | |||||||||||||||||    
T  46625275 aagttgaaagaaacattttaaaatgctcaaaaggattccct-agtgcacgaaacaaaattcaaagagtggctgactaagacctacttcgcttaagcgacg 46625373  T
Q  353 gctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacaga 443  Q
    ||| | |||||| ||||||| ||||||||  |||| | |||| ||||||| | ||||||||| |||||||||| |||||||||||| ||||    
T  46625374 gctggctcgcttaagcgacctgcttacagagagttggcgttctgctcgctaatggtttgctcgcggttcgcttaagcgaacttctggcaga 46625464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 338 - 449
Target Start/End: Original strand, 2464763 - 2464874
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||||||||||| ||||||||      
T  2464763 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgggcgaactttg 2464862  T
Q  438 gacagaatcaaa 449  Q
    ||||||||||||    
T  2464863 gacagaatcaaa 2464874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 305 - 403
Target Start/End: Complemental strand, 11383538 - 11383440
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctt 403  Q
    |||||||||| |||||||||||||||||||  ||||||||||||||||||||| |||||| |||||| |||| ||||||||| ||||||| ||||||||    
T  11383538 gcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctagctcgcttaagcgacaggctcacagtaagtctgggttccgctcgctt 11383440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 13742686 - 13742803
Alignment:
Q  13 aacctgtgtatatctacatacaacttaaccat-acatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    |||||||||||||| ||||||||||  || || |||||||||||||||||||||| || |||||  || ||||||||||||||| | |||||| ||||||    
T  13742686 aacctgtgtatatcaacatacaactcgactattacatatgtttcatatgacttactactccacaactcaaacaatccagaacatacacaattatttataa 13742785  T
Q  112 ttatgcacatacatcaat 129  Q
    |||||| |||||||||||    
T  13742786 ttatgctcatacatcaat 13742803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 449
Target Start/End: Original strand, 16090425 - 16090595
Alignment:
Q  279 ctcaaaaggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggctta 378  Q
    |||||||||  |||| | ||||| |||||| |||||||||  ||||||||||    || |||||||||||||||||||| |||||| |||||||  ||||    
T  16090425 ctcaaaaggatcccttagtgcacgaagcaaggttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatctta 16090524  T
Q  379 cagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaa 449  Q
    ||||| || ||||||||| |||||||||| | |||||||| | |||| |||||| |  || ||||||||||    
T  16090525 cagtaggtctgggttcagttcgcttacgggtcgctcacggcttgcttaagcgaattcttggcagaatcaaa 16090595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 277 - 449
Target Start/End: Complemental strand, 29181826 - 29181654
Alignment:
Q  277 tgctcaaaaggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggct 376  Q
    |||||||||||  |||| | ||||| |||||| |||||||||  | ||||||||    || || ||||||||||||||||| |||||| |||||||  ||    
T  29181826 tgctcaaaaggatcccttagtgcacgaagcaaggttcagaaaaagactgactaacactcagtttgcttaagcgacggctagctcgcttaagcgaccatct 29181727  T
Q  377 tacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaa 449  Q
    ||||||| || ||||||||| ||||||| || | |||||||| |||||| ||||||||  || ||||||||||    
T  29181726 tacagtaggtctgggttcagttcgcttatgggtcgctcacggctcgcttaagcgaactcttggcagaatcaaa 29181654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 13123967 - 13123851
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||  || |||||  | | ||||| |||||||| | |||||| ||||||    
T  13123967 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactccacaact-cgacaattcagaacatacacaattatttataa 13123869  T
Q  112 ttatgcacatacatcaat 129  Q
    ||||||||||||||||||    
T  13123868 ttatgcacatacatcaat 13123851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 13006489 - 13006604
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    ||||||||||||||||||||||||  |||| ||||||||| | ||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  13006489 acctgtgtatatctacatacaactcgaccactacatatgtataatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 13006587  T
Q  113 tatgcacatacatcaat 129  Q
    |||||||||||||||||    
T  13006588 tatgcacatacatcaat 13006604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 12710896 - 12710780
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||  || ||| |  | | ||||| |||||||| | |||||| ||||||    
T  12710896 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactccataact-cgacaattcagaacatacacaattatttataa 12710798  T
Q  112 ttatgcacatacatcaat 129  Q
    ||||||||||||||||||    
T  12710797 ttatgcacatacatcaat 12710780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 433
Target Start/End: Complemental strand, 14320316 - 14320192
Alignment:
Q  310 gttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc-agctcgcttacggt 408  Q
    |||||||||  ||||||||||||  || ||||||||||||| || ||| |||||| ||||||||||| |||| |||||  ||| |  ||||||| || ||    
T  14320316 gttcagaaaaaggctgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccggctcacagaaagttgaggtcctcgctcgctcacagt 14320217  T
Q  409 ttgctcacggttcgcttgagcgaac 433  Q
    | |||||||||||||||||||||||    
T  14320216 tcgctcacggttcgcttgagcgaac 14320192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 409
Target Start/End: Complemental strand, 21231674 - 21231571
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 404  Q
    |||||||||| |||||||||||| ||||||  |||||||||||||||| | |||| |||| ||||||| ||| |||| ||||| |||||| ||||||| |    
T  21231674 gcaaagttca-aaagtggctgacaaaggtcatcttcgcttaagcgacgaccagtttgcttaagcgaccagctcacagaaagttggggttccgctcgctga 21231576  T
Q  405 cggtt 409  Q
    |||||    
T  21231575 cggtt 21231571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 12694777 - 12694835
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||||| ||| || ||||| | | ||||||||||||||||||||    
T  12694777 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccccaca 12694835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 14945856 - 14945802
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatg--tttcatatgacttacaac 69  Q
    ||||||||||||||||||||| ||| || ||||||  ||||||||||||||||||    
T  14945856 tgtgtatatctacatacaactaaacaatgcatatgtttttcatatgacttacaac 14945802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 15373449 - 15373395
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatg--tttcatatgacttacaac 69  Q
    ||||||||||||||||||||| ||| || ||||||  ||||||||||||||||||    
T  15373449 tgtgtatatctacatacaactaaacaatgcatatgtttttcatatgacttacaac 15373395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 15142390 - 15142448
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    |||||||||||||||||||||  || || ||||| | | ||||||||||||||||||||    
T  15142390 tgtgtatatctacatacaactccacaatgcatatatataatatgacttacaaccccaca 15142448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 45185638 - 45185695
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||||||||| || ||||| | | |||||||||||||| |||||    
T  45185638 tgtgtatatctacatacaacttaacaatgcatatatat-atatgacttacaactccaca 45185695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 1612809 - 1612842
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatat 50  Q
    ||||||||||||||||||||| ||||||||||||    
T  1612809 tgtgtatatctacatacaactcaaccatacatat 1612842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 445
Target Start/End: Original strand, 13678982 - 13679030
Alignment:
Q  398 tcgcttacggttt-gctcacggttcgcttgagcgaacttctgacagaat 445  Q
    |||||||||| || ||||||||||||||||||||| | |||||||||||    
T  13678982 tcgcttacgggttcgctcacggttcgcttgagcgagcgtctgacagaat 13679030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 273 - 468
Target Start/End: Original strand, 23527904 - 23528099
Alignment:
Q  273 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 371  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  23527904 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgac 23528001  T
Q  372 cggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    | |||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  23528002 cagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcacagg 23528099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 305 - 445
Target Start/End: Complemental strand, 18408631 - 18408491
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 404  Q
    |||||||||| |||||||||||||||||||   |||||||||||||||||||||| |||| |||||||||||||||| ||||| |||||| ||||||| |    
T  18408631 gcaaagttcaaaaagtggctgactaaggtcattttcgcttaagcgacggctagtttgcttaagcgaccggcttacagaaagttggggttccgctcgctaa 18408532  T
Q  405 cggtttgctcacggttcgcttgagcgaacttctgacagaat 445  Q
    ||||| |||  ||  |||||| |||||||||||| ||||||    
T  18408531 cggttcgcttgcgactcgcttaagcgaacttctggcagaat 18408491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 28890053 - 28889925
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    |||||||||||||||||||  |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||| ||||||| ||||||||      
T  28890053 ttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttgggcgaactttg 28889954  T
Q  438 gacagaatcaaaatggtttttcgctcaca 466  Q
    ||||||| |||||||||||||||||||||    
T  28889953 gacagaaacaaaatggtttttcgctcaca 28889925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 28896757 - 28896629
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    |||||||||||||||||||  |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||| ||||||| ||||||||      
T  28896757 ttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttgggcgaactttg 28896658  T
Q  438 gacagaatcaaaatggtttttcgctcaca 466  Q
    ||||||| |||||||||||||||||||||    
T  28896657 gacagaaacaaaatggtttttcgctcaca 28896629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 28910005 - 28909877
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    |||||||||||||||||||  |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||| ||||||| ||||||||      
T  28910005 ttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttgggcgaactttg 28909906  T
Q  438 gacagaatcaaaatggtttttcgctcaca 466  Q
    ||||||| |||||||||||||||||||||    
T  28909905 gacagaaacaaaatggtttttcgctcaca 28909877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 28931697 - 28931569
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    |||||||||||||||||||  |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||| ||||||| ||||||||      
T  28931697 ttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttgggcgaactttg 28931598  T
Q  438 gacagaatcaaaatggtttttcgctcaca 466  Q
    ||||||| |||||||||||||||||||||    
T  28931597 gacagaaacaaaatggtttttcgctcaca 28931569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 28946400 - 28946272
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    |||||||||||||||||||  |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||| ||||||| ||||||||      
T  28946400 ttcgcttaagcgacggctatctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttgggcgaactttg 28946301  T
Q  438 gacagaatcaaaatggtttttcgctcaca 466  Q
    ||||||| |||||||||||||||||||||    
T  28946300 gacagaaacaaaatggtttttcgctcaca 28946272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 449
Target Start/End: Original strand, 19236299 - 19236410
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||| ||||||| || | |||||||| |||||| |||||| |  |    
T  19236299 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatgggtcgctcacggctcgcttaagcgaattctt 19236398  T
Q  438 gacagaatcaaa 449  Q
    | ||||||||||    
T  19236399 ggcagaatcaaa 19236410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 449
Target Start/End: Original strand, 22467181 - 22467290
Alignment:
Q  340 cgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctga 439  Q
    ||||||||||||||||||||||||| | ||||| |||||||||| || ||||||||| ||||||| || | |||||||| |||||| |||||| |  ||     
T  22467181 cgcttaagcgacggctagttcgcttaaccgaccagcttacagtaggtctgggttcagttcgcttatgggtcgctcacggctcgcttaagcgaattcttgg 22467280  T
Q  440 cagaatcaaa 449  Q
    ||||||||||    
T  22467281 cagaatcaaa 22467290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 449
Target Start/End: Original strand, 22460555 - 22460666
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||  ||||||| || |  ||||||| |||||| |||||| |  |    
T  22460555 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcaattcgcttatgggtcactcacggctcgcttaagcgaattctt 22460654  T
Q  438 gacagaatcaaa 449  Q
    | ||||||||||    
T  22460655 ggcagaatcaaa 22460666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 22232496 - 22232436
Alignment:
Q  78 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 138  Q
    |||||||||||||||||| | | ||||||||||||||||| ||||||||||||||||||||    
T  22232496 tccaacaatccagaacatacacgattaattataattatgctcatacatcaatttcattcaa 22232436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 23527632 - 23527747
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||||||||||||| || |||||  || || ||||||| ||   | |||||| |||||||    
T  23527632 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactccacaactcaaataatccag-actgacacaattatttataat 23527730  T
Q  113 tatgcacatacatcaat 129  Q
    |||||||||||||||||    
T  23527731 tatgcacatacatcaat 23527747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 466
Target Start/End: Complemental strand, 28933200 - 28933070
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttggg-ttcagctcgcttacggtttgctcacggttcgcttgagcgaacttc 436  Q
    ||||||||||| |||||||  |||||| | |||||  ||||||||| || |||| ||||| |||||||||| | |||||||| ||||||  ||||||||     
T  28933200 ttcgcttaagccacggctatctcgcttaaacgaccaacttacagtaggtctggggttcagttcgcttacgggtcgctcacggctcgctttggcgaacttt 28933101  T
Q  437 tgacagaatcaaaa-tggtttttcgctcaca 466  Q
     ||||||| ||||| ||||||||||||||||    
T  28933100 ggacagaaacaaaaatggtttttcgctcaca 28933070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 468
Target Start/End: Original strand, 20819618 - 20819689
Alignment:
Q  398 tcgcttacggtttgctcacg-gttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    ||||| |||||| ||||||  ||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  20819618 tcgctcacggttcgctcacaagttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 20819689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 468
Target Start/End: Original strand, 20826718 - 20826789
Alignment:
Q  398 tcgcttacggtttgctcacg-gttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    ||||| |||||| ||||||  ||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  20826718 tcgctcacggttcgctcacaagttcgcttgagcgaaatttggacagaatcaaaatggtttttcgctcacagg 20826789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 433
Target Start/End: Original strand, 34829441 - 34829578
Alignment:
Q  297 tgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc-a 395  Q
    ||||| ||||||||||||||||  || |||||||||  || ||||||||||||| || ||| |||||| ||||||| ||| |||  | ||| ||||||      
T  34829441 tgcacgaagcaaagttcagaaaaaggttgactaaggctcagttcgcttaagcgaagggtagctcgcttaagcgaccagctcacaaaaggttggggttctc 34829540  T
Q  396 gctcgcttacggtttgctcacggttcgcttgagcgaac 433  Q
    |||| || |||||| |||| | ||||||||||||||||    
T  34829541 gctcactcacggttcgctcgcagttcgcttgagcgaac 34829578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 22232625 - 22232575
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatg-tttcatatgacttac 66  Q
    ||||||||||||||||||||||||| || |||||| |||||||||||||||    
T  22232625 tgtgtatatctacatacaacttaacaatgcatatgttttcatatgacttac 22232575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 25013745 - 25013803
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||||||||| || ||||| | | | ||||||||||||||||||    
T  25013745 tgtgtatatctacatacaacttaacaatgcatatatataaaatgacttacaaccccaca 25013803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 22439370 - 22439322
Alignment:
Q  361 gcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtt 409  Q
    |||| ||||||||||||||||||||| ||||||| ||||||||| ||||    
T  22439370 gcttaagcgaccggcttacagtaagtctgggttctgctcgcttaaggtt 22439322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 10035305 - 10035359
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccc 71  Q
    ||||||||||||||||||||| ||| || ||||| | | ||||||||||||||||    
T  10035305 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccc 10035359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 21901849 - 21901795
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccc 71  Q
    ||||||||||||||||||||| ||| || ||||| | | ||||||||||||||||    
T  21901849 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccc 21901795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 22439406 - 22439360
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgac 351  Q
    |||| ||||| ||||||||||||||||||| |||| |||||||||||    
T  22439406 gcaacgttcaaaaagtggctgactaaggtcaactttgcttaagcgac 22439360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 18819096 - 18819149
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaacc 70  Q
    ||||||||||||||||||||| ||| || ||||| | | |||||||||||||||    
T  18819096 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaacc 18819149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 273 - 466
Target Start/End: Original strand, 41111214 - 41111407
Alignment:
Q  273 agaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 371  Q
    |||| |||||| | ||||||||| ||||| |||||| ||||||||||  |||||| |||||| |||||||||||||||||||||||||||||| ||||||    
T  41111214 agaacgctcaagaagtcccctca-tgcactaagcaacagttcagaaaa-ggctgattaaggttcacttcgcttaagcgacggctagttcgcttaagcgac 41111311  T
Q  372 cggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcaca 466  Q
    | |||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||||||||||||    
T  41111312 cagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggtttttcgctcaca 41111407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 307 - 408
Target Start/End: Original strand, 18712117 - 18712218
Alignment:
Q  307 aaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacg 406  Q
    |||||||| || ||||||||||||||||  |||||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||| ||||||| |||    
T  18712117 aaagttcaaaaggtggctgactaaggtcatcttcgcttaagcgacggctagttcgcttaagcgaccagcttacagaaagttggggttccgctcgctaacg 18712216  T
Q  407 gt 408  Q
    ||    
T  18712217 gt 18712218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 449
Target Start/End: Complemental strand, 20858416 - 20858305
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||| |||||||||| | |||||||| |||||| |||||| |  |    
T  20858416 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattctt 20858317  T
Q  438 gacagaatcaaa 449  Q
    | ||||||||||    
T  20858316 ggcagaatcaaa 20858305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 449
Target Start/End: Original strand, 21705674 - 21705785
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||| |||||||||| | |||||||| |||||| |||||| |  |    
T  21705674 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattctt 21705773  T
Q  438 gacagaatcaaa 449  Q
    | ||||||||||    
T  21705774 ggcagaatcaaa 21705785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 449
Target Start/End: Original strand, 21710217 - 21710328
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||| ||||||| |||| |||||||| |||||| |||||| |  |    
T  21710217 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatggttcgctcacggctcgcttaagcgaattctt 21710316  T
Q  438 gacagaatcaaa 449  Q
    | ||||||||||    
T  21710317 ggcagaatcaaa 21710328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 449
Target Start/End: Complemental strand, 20851789 - 20851678
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||| ||||||| || | |||||||| |||||| |||||| |  |    
T  20851789 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttatgggtcgctcacggctcgcttaagcgaattctt 20851690  T
Q  438 gacagaatcaaa 449  Q
    | ||||||||||    
T  20851689 ggcagaatcaaa 20851678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 129
Target Start/End: Original strand, 41110997 - 41111112
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataat 112  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||||||||||||| || |||||  || ||||||||||| | | | |||||| |||||||    
T  41110997 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacttactactccacaactcaaacaatccaga-cttacacaattatttataat 41111095  T
Q  113 tatgcacatacatcaat 129  Q
    |||||||||||||||||    
T  41111096 tatgcacatacatcaat 41111112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 20941717 - 20941657
Alignment:
Q  78 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 138  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||    
T  20941717 tccaacaatccagaacatacacaattaattataattatgctcatacatcaatttcattcaa 20941657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 443
Target Start/End: Complemental strand, 22030504 - 22030298
Alignment:
Q  238 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 336  Q
    ||||||| | ||||| ||||||||||| | ||| |||||||||||||||| |  ||| | ||||  |||||||  | | ||||||||||||||||  |      
T  22030504 tatacaaaggttatacaagttgaaagaaacattatagaatgctcaaaaggatttcct-agtgcaagaagcaaaaattaaaaagtggctgactaagacctt 22030406  T
Q  337 cttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggttt-gctcacggttcgcttgagcgaactt 435  Q
    |||||||||||||| |||| | |||||| |||||| |||||||||  |||| | |||| ||||||| | ||||| ||||||||||||||  |||||||||    
T  22030405 cttcgcttaagcgaaggctggctcgcttaagcgactggcttacagagagttggtgttctgctcgctaagggtttcgctcacggttcgctcaagcgaactt 22030306  T
Q  436 ctgacaga 443  Q
    ||| ||||    
T  22030305 ctggcaga 22030298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 351
Target Start/End: Original strand, 11157441 - 11157554
Alignment:
Q  238 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 336  Q
    |||| |||| ||||| ||||||||||| | |||||  ||||||||||||| |||||| ||||||| | |||||||||| ||||||| |||||||||||      
T  11157441 tatataagggttatacaagttgaaagaaacatttttaaatgctcaaaaggatcccct-aatgcacgaggcaaagttcaaaaagtggttgactaaggtcat 11157539  T
Q  337 cttcgcttaagcgac 351  Q
    |||||||||||||||    
T  11157540 cttcgcttaagcgac 11157554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 434
Target Start/End: Original strand, 19961547 - 19961684
Alignment:
Q  297 tgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc-a 395  Q
    ||||| |||||||||||||| || ||||||||||||  ||  |||||||||||| || ||| |||||| ||||||| || ||||| |||||||| |||      
T  19961547 tgcacgaagcaaagttcagatagaggctgactaaggctcatctcgcttaagcgaagggtagctcgcttaagcgaccagc-tacaggaagtttggattctc 19961645  T
Q  396 gctcgcttacggtttgctcacggttcgcttgagcgaact 434  Q
    ||||||| |||||| |||  ||||||||| |||||||||    
T  19961646 gctcgctcacggttcgcttgcggttcgctcgagcgaact 19961684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 20941846 - 20941793
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatg-tttcatatgacttacaac 69  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  20941846 tgtgtatatctacatacaacttaacaatgcatatgttttcatatgacttacaac 20941793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 23631145 - 23631203
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||||||||| || ||||| | | |||||||||||||| |||||    
T  23631145 tgtgtatatctacatacaacttaacaatgcatatatataatatgacttacaactccaca 23631203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 41312336 - 41312394
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||| | ||||||||||||| || ||||| | | ||||||||||||||||||||    
T  41312336 tgtgtatatattcatacaacttaacaatgcatatatataatatgacttacaaccccaca 41312394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 20824349 - 20824296
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatg-tttcatatgacttacaac 69  Q
    |||||||||||||||||||||||||  | |||||| |||||||||||| |||||    
T  20824349 tgtgtatatctacatacaacttaacattgcatatgttttcatatgactcacaac 20824296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 272 - 465
Target Start/End: Original strand, 452 - 644
Alignment:
Q  272 tagaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcga 370  Q
    |||||||||||| | ||||||||| ||||| ||| || ||||||||||  |||||||||||   |||||||||||||||||||||||||||||| |||||    
T  452 tagaatgctcaagaagtcccctca-tgcactaagtaatagttcagaaaa-ggctgactaagactcacttcgcttaagcgacggctagttcgcttaagcga 549  T
Q  371 ccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 465  Q
    || |||||||||| || ||||||||| |||||||||| | |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  550 ccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgattgagcgaactttggacagaatcaaaatggtttttcgctcac 644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 153 - 269
Alignment:
Q  13 aacctgtgtatatctacatacaacttaaccat-acatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||| ||| || |||||| ||||||||||||||| || |||||  || ||||||||||||||| | |||||| ||||||    
T  153 aacctgtgtatatctacatacaactcaactattacatatatttcatatgacttactactccacagctc-aacaatccagaacatacacaattatttataa 251  T
Q  112 ttatgcacatacatcaat 129  Q
    ||||||||| ||||||||    
T  252 ttatgcacacacatcaat 269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 272 - 468
Target Start/End: Complemental strand, 8046616 - 8046420
Alignment:
Q  272 tagaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcga 370  Q
    |||||||||||| | ||||||||| ||||| ||| || ||||||||||  ||||||||||||  |||||||||||||||||| |||| |||||| |||||    
T  8046616 tagaatgctcaagaagtcccctca-tgcactaagtaacagttcagaaaaaggctgactaaggctcacttcgcttaagcgacgtctagctcgcttaagcga 8046518  T
Q  371 ccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    ||  |||| |||| || ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  8046517 ccaacttatagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 8046420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 321 - 468
Target Start/End: Original strand, 53483023 - 53483171
Alignment:
Q  321 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggt 419  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |||||||||| | | |||| |||| |||||||||| | |||||||||    
T  53483023 ggctgactaaggttcacttcgcttaagcgacggcaagttcgcttaagcgaccagcttacagtaggctctgggctcagttcgcttacgggtcgctcacggt 53483122  T
Q  420 tcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  53483123 tcgcttgagcgaactttggacagaatcaaaatggtttttcgctcacagg 53483171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 297 - 449
Target Start/End: Original strand, 11847462 - 11847614
Alignment:
Q  297 tgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc-a 395  Q
    ||||||||||||||||||||||| ||||||||||||  ||  ||||||||||||||| |||||||||| |||||||  | ||||| |||||||| ||| |    
T  11847462 tgcacaaagcaaagttcagaaagaggctgactaaggctcagctcgcttaagcgacgggtagttcgcttaagcgaccaac-tacaggaagtttggattcta 11847560  T
Q  396 gctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaa 449  Q
    |||||||||||| | ||||||||||||||| |||||| |  || ||||||||||    
T  11847561 gctcgcttacgggtcgctcacggttcgcttaagcgaattcttggcagaatcaaa 11847614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 471
Target Start/End: Original strand, 15407454 - 15407608
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 404  Q
    |||||||||| |||||||||||||| ||||  |||||||||||||||||| ||||||||| ||||||||||| |||| |||| | ||||| ||||         
T  15407454 gcaaagttca-aaagtggctgactatggtcatcttcgcttaagcgacggccagttcgcttaagcgaccggctcacagaaagtctaggttccgctc----- 15407547  T
Q  405 cggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 471  Q
          ||| |||||||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  15407548 ------gctgacggttcgcttgagcgaacttctggcagaatcaaaatggtttttcgcttacgggttc 15407608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 279 - 449
Target Start/End: Complemental strand, 16147546 - 16147376
Alignment:
Q  279 ctcaaaaggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggctta 378  Q
    |||||||||  |||| | ||||| |||||| |||||||||  ||||||||||    || |||||||||||||||||||| |||||| |||||||  ||||    
T  16147546 ctcaaaaggatcccttagtgcacgaagcaaggttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatctta 16147447  T
Q  379 cagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaa 449  Q
    ||||| || ||||||||| |||||||||| | |||||||| |||||| |||||| |  || ||||||||||    
T  16147446 cagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattcttggcagaatcaaa 16147376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 318 - 409
Target Start/End: Original strand, 14486049 - 14486140
Alignment:
Q  318 agtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtt 409  Q
    |||||||||||||||  |||||||||||||||| |||| | |||||| ||||||||||||||||  ||||||||||| ||||||| ||||||    
T  14486049 agtggctgactaaggctcacttcgcttaagcgaaggctggctcgcttaagcgaccggcttacagagagtttgggttccgctcgctcacggtt 14486140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 297 - 443
Target Start/End: Original strand, 13887144 - 13887289
Alignment:
Q  297 tgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcag 396  Q
    ||||| ||||||| |||| ||||||||| ||||||  |  ||||||||||||||||||| | |||||| | ||||||||||||||  |||| | |||| |    
T  13887144 tgcacgaagcaaaattca-aaagtggctaactaagaccttcttcgcttaagcgacggctggctcgcttaaacgaccggcttacagagagttggcgttctg 13887242  T
Q  397 ctcgcttacggtttgctcacggttcgcttgagcgaacttctgacaga 443  Q
    |||||| | |||| || |||||||||||| ||| |||||||||||||    
T  13887243 ctcgctaatggttcgcgcacggttcgcttaagcaaacttctgacaga 13887289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 297 - 443
Target Start/End: Original strand, 13888001 - 13888146
Alignment:
Q  297 tgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcag 396  Q
    ||||| ||||||| |||| ||||||||| ||||||  |  ||||||||||||||||||| | |||||| | ||||||||||||||  |||| | |||| |    
T  13888001 tgcacgaagcaaaattca-aaagtggctaactaagaccttcttcgcttaagcgacggctggctcgcttaaacgaccggcttacagagagttggcgttctg 13888099  T
Q  397 ctcgcttacggtttgctcacggttcgcttgagcgaacttctgacaga 443  Q
    |||||| | |||| || |||||||||||| ||| |||||||||||||    
T  13888100 ctcgctaatggttcgcgcacggttcgcttaagcaaacttctgacaga 13888146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 311 - 443
Target Start/End: Original strand, 15244587 - 15244719
Alignment:
Q  311 ttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggttt 410  Q
    |||| ||||||||||||||||  |  ||||| ||||||||||| |   |||||| ||||||||||||||||  |||| | |||| ||||||| | || |     
T  15244587 ttcaaaaagtggctgactaagaccttcttcgattaagcgacggttgactcgcttaagcgaccggcttacagagagttggcgttccgctcgctaatggctc 15244686  T
Q  411 gctcacggttcgcttgagcgaacttctgacaga 443  Q
    ||||||||||||||| |||||||||||||||||    
T  15244687 gctcacggttcgcttaagcgaacttctgacaga 15244719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 316 - 439
Target Start/End: Original strand, 15307497 - 15307620
Alignment:
Q  316 aaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctca 415  Q
    ||||||||||||||||  |  |||||||||||||| |||| | |||||| |||||||| |||||||  |||| | |||| ||||||| | || | |||||    
T  15307497 aaagtggctgactaagaccttcttcgcttaagcgatggctggctcgcttaagcgaccgacttacagagagttggcgttccgctcgctaatggctcgctca 15307596  T
Q  416 cggttcgcttgagcgaacttctga 439  Q
    |||||||||| |||||||||||||    
T  15307597 cggttcgcttaagcgaacttctga 15307620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 14555941 - 14555881
Alignment:
Q  78 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 138  Q
    |||||||||||||||||  | ||||||||||||||||||| ||||||||||||||||||||    
T  14555941 tccaacaatccagaacaaacacaattaattataattatgctcatacatcaatttcattcaa 14555881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 8046893 - 8046777
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    |||||||||||||||||||||||||  || | ||||||| ||||||||||||||| || |||||  | ||  |||||| | ||| | |||||| ||||||    
T  8046893 aacctgtgtatatctacatacaactcgactattacatatatttcatatgacttactactccacaact-cagtaatccaaatcatacacaattatttataa 8046795  T
Q  112 ttatgcacatacatcaat 129  Q
    ||||||||| ||||||||    
T  8046794 ttatgcacacacatcaat 8046777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 438
Target Start/End: Original strand, 8834185 - 8834385
Alignment:
Q  238 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 336  Q
    ||||||| | ||||| ||||||||||| | ||||||||| |||||||||| | | || | ||||  |||||||  ||| ||||||||||||||||  |      
T  8834185 tatacaaaggttatacaagttgaaagaaacattttagaacgctcaaaaggattctct-agtgcatgaagcaaaaatcaaaaagtggctgactaagacctt 8834283  T
Q  337 cttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta-cggtttgctcacggttcgcttgagcgaactt 435  Q
    |||||||||||||| |||| | | | || ||||||||||||||||  |||| | |||| ||||||| |  |||| ||||||||||||||  ||| |||||    
T  8834284 cttcgcttaagcgaaggctggcttg-ttaagcgaccggcttacagagagttggtgttctgctcgctaaggggttcgctcacggttcgctcaagcaaactt 8834382  T
Q  436 ctg 438  Q
    |||    
T  8834383 ctg 8834385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 14485988 - 14486041
Alignment:
Q  234 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg 287  Q
    ||||||||||||| ||||| ||| ||||||| | ||||||||||||||||||||    
T  14485988 tacctatacaagggttatacaagctgaaagaaacattttagaatgctcaaaagg 14486041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 14556070 - 14556017
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatg-tttcatatgacttacaac 69  Q
    ||||||||||||||||||||||||  || |||||| ||||||||||||||||||    
T  14556070 tgtgtatatctacatacaacttaataatgcatatgttttcatatgacttacaac 14556017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 30237938 - 30237995
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccac 74  Q
    ||||||||||||||||||||| ||| || ||||| | | |||||||||||||||||||    
T  30237938 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccccac 30237995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 8046745 - 8046692
Alignment:
Q  143 atatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaa 196  Q
    ||||||| ||||||| |||||||| || |||||||||| ||||||||||| |||    
T  8046745 atatatattcacttgttttcatacacaatcatctccaacatttactaacaccaa 8046692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 295 - 468
Target Start/End: Original strand, 10667 - 10829
Alignment:
Q  295 aatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc 394  Q
    ||||||| | |||||||||| |||||||||||||||| || |||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||    
T  10667 aatgcacgaggcaaagttcaaaaagtggctgactaagatcaacttcgcttaagcgacggctagctcgcttaagcgaccggcttacagtaagtctgggttc 10766  T
Q  395 agctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
     ||||||||           | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10767 tgctcgctt-----------agggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 10829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 3e-46; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 272 - 465
Target Start/End: Original strand, 23865885 - 23866078
Alignment:
Q  272 tagaatgctcaaaaggtcccctcaatgcacaaagcaa-agttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcga 370  Q
    |||||||||||| | ||||||||| ||||| ||| || ||||||||||  |||||||||||   ||||||||||||||||||||||| |||||| |||||    
T  23865885 tagaatgctcaagaagtcccctca-tgcactaagtaatagttcagaaaaaggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcga 23865983  T
Q  371 ccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 465  Q
    ||  ||||||||| || ||||||||| |||||||||| | |||||||||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  23865984 ccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgatcac 23866078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 358 - 468
Target Start/End: Original strand, 17053949 - 17054060
Alignment:
Q  358 ttcgcttgagcgaccggcttacagtaagtt-tgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggttt 456  Q
    ||||||| ||||||| |||||||||| ||| ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||| ||||||||||    
T  17053949 ttcgcttaagcgaccagcttacagtaggttctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatgaaaatggttt 17054048  T
Q  457 ttcgctcacagg 468  Q
    ||||||||||||    
T  17054049 ttcgctcacagg 17054060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 471
Target Start/End: Complemental strand, 14057302 - 14057148
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 404  Q
    |||||||||| ||||||||||| |||||||  ||||||||||||||||||||| |||||| ||||||||||| |||| |||| ||||||| ||||         
T  14057302 gcaaagttca-aaagtggctgattaaggtcatcttcgcttaagcgacggctagctcgcttaagcgaccggctcacagaaagtctgggttccgctc----- 14057209  T
Q  405 cggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 471  Q
          ||| ||||||||||||||||||||| || |||||||||||||||||||| ||||| |||||    
T  14057208 ------gctgacggttcgcttgagcgaacttatggcagaatcaaaatggtttttcactcacgggttc 14057148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 305 - 471
Target Start/End: Original strand, 25111354 - 25111508
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 404  Q
    |||||||||| |||||||||||||| ||||  |||||||||||||||||| ||||||||| |||||||| || |||| |||| ||||||| ||||         
T  25111354 gcaaagttca-aaagtggctgactatggtcatcttcgcttaagcgacggccagttcgcttaagcgaccgactcacagaaagtctgggttccgctc----- 25111447  T
Q  405 cggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 471  Q
          ||| |||||||||||||||||||||||| ||||||||||||||||||||||| || |||||    
T  25111448 ------gctgacggttcgcttgagcgaacttctggcagaatcaaaatggtttttcgcttacgggttc 25111508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 449
Target Start/End: Complemental strand, 24321327 - 24321216
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||| |||||||||| | |||||||| |||||| |||||| |  |    
T  24321327 ttcgcttaagcgacggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattctt 24321228  T
Q  438 gacagaatcaaa 449  Q
    | ||||||||||    
T  24321227 ggcagaatcaaa 24321216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 409
Target Start/End: Original strand, 18613531 - 18613691
Alignment:
Q  248 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 346  Q
    ||||| ||||||||||  | |||||  ||||||||| ||| |||||| | ||||| | |||||||||| |||||||| ||||||||||  ||||||||||    
T  18613531 ttatacaagttgaaaggaacatttttaaatgctcaagaggatcccct-agtgcacgaggcaaagttca-aaagtggccgactaaggtcatcttcgcttaa 18613628  T
Q  347 gcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtt 409  Q
    ||||||||| |||||||| ||||||| ||||||||  |||| |||||| ||||||| ||||||    
T  18613629 gcgacggctggttcgcttaagcgacctgcttacagagagttggggttccgctcgctaacggtt 18613691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 19902924 - 19902808
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||  || |||||  | | |||||||||||||| | |||||| ||||||    
T  19902924 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactccacaact-cgacaatccagaacatacacaattatttataa 19902826  T
Q  112 ttatgcacatacatcaat 129  Q
    | ||||||||||||||||    
T  19902825 tcatgcacatacatcaat 19902808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 19988050 - 19987990
Alignment:
Q  78 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 138  Q
    |||| ||||||||||||| | |||||||||| |||||||| ||||||||||||||||||||    
T  19988050 tccaccaatccagaacatacacaattaattacaattatgctcatacatcaatttcattcaa 19987990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 20005612 - 20005554
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||||||||| || ||||| | | ||||||||||||||||||||    
T  20005612 tgtgtatatctacatacaacttaacaatgcatatatataatatgacttacaaccccaca 20005554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 23865615 - 23865732
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatat-gacttacaaccccacacttccaacaatccagaacatgcccaattaattata 110  Q
    ||||||||||||||||||||||||| ||| | | ||||| |||||||| ||||||| || ||  |  || |||||| |||||||| | |||||| |||||    
T  23865615 aacctgtgtatatctacatacaactcaactaatgcatatatttcatattgacttactactccgtaactc-aacaattcagaacatacacaattatttata 23865713  T
Q  111 attatgcacatacatcaat 129  Q
    |||||||||||||||||||    
T  23865714 attatgcacatacatcaat 23865732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 17053780 - 17053858
Alignment:
Q  14 acctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccaga 91  Q
    ||||||||||||||||||||||||  |||| ||||||||| ||||||||| ||| || |||||  || |||||||||||    
T  17053780 acctgtgtatatctacatacaactcgaccactacatatgtatcatatgacatactactccacaactcaaacaatccaga 17053858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 21282245 - 21282298
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgt-ttcatatgacttacaac 69  Q
    ||||||||||||||||||||| |||||||||||| | | |||||||||||||||    
T  21282245 tgtgtatatctacatacaactcaaccatacatatatgtacatatgacttacaac 21282298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 19988178 - 19988126
Alignment:
Q  18 gtgtatatctacatacaacttaaccatacatatg-tttcatatgacttacaac 69  Q
    |||||||||||||||||||||||| || |||||| ||||||||| ||||||||    
T  19988178 gtgtatatctacatacaacttaacaatgcatatgttttcatatggcttacaac 19988126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 248 - 471
Target Start/End: Original strand, 665 - 888
Alignment:
Q  248 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 346  Q
    ||||| || |||||||| | |||||  ||||||||||||| |||||| ||||||| | |||||||||| |||||||||||||||||||  ||||||||||    
T  665 ttatacaaattgaaagaaacattttttaatgctcaaaaggatcccct-aatgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaa 763  T
Q  347 gcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatc 446  Q
    ||||||||| |||||||| ||||||||||||||||  |||| |||||   |||||| ||| || |||  |||||||||| |||||||||||||||||||     
T  764 gcgacggctggttcgcttaagcgaccggcttacagagagttggggtttccctcgctaacgtttcgcttgcggttcgcttaagcgaacttctgacagaatg 863  T
Q  447 aaaatggtttttcgctcacaggttc 471  Q
     ||||| ||||||||| || |||||    
T  864 gaaatgatttttcgcttacgggttc 888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 445
Target Start/End: Original strand, 875 - 923
Alignment:
Q  398 tcgcttacggttt-gctcacggttcgcttgagcgaacttctgacagaat 445  Q
    |||||||||| || ||||||||||||||||||||| | |||||||||||    
T  875 tcgcttacgggttcgctcacggttcgcttgagcgagcgtctgacagaat 923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 186 - 468
Target Start/End: Original strand, 243 - 504
Alignment:
Q  186 actaacatcaaccaaattcgatcatcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaa 284  Q
    ||||||||||||||| |||||||| ||| | ||| ||||||| ||||| ||||||||||| | ||||| ||||||||||| ||||||||||||||||||     
T  243 actaacatcaaccaa-ttcgatcaccagcgtgttctagtaggattctgatacctatacaaagtttatacaagttgaaagaaatattttagaatgctcaag 341  T
Q  285 aggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaa 384  Q
    | |||||||   ||||| ||||||| ||||||||| ||||||||||||| ||||||||||||                    ||||| ||||||||| ||    
T  342 atgtcccct-tgtgcacgaagcaaaattcagaaagaggctgactaaggttcacttcgcttaa--------------------gcgactggcttacagaaa 420  T
Q  385 gtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    || ||||||| ||||||||| |||| | |  |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  421 gtctgggttctgctcgcttagggttcgtttgcggttcgcttaagcgaacttctgacagaatcaaaatggtttttcgctcacagg 504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 186 - 468
Target Start/End: Original strand, 7388 - 7649
Alignment:
Q  186 actaacatcaaccaaattcgatcatcagagcgtt-tagtagggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaa 284  Q
    ||||||||||||||| |||||||| ||| | ||| ||||||| ||||| ||||||||||| | ||||| ||||||||||| ||||||||||||||||||     
T  7388 actaacatcaaccaa-ttcgatcaccagcgtgttctagtaggattctgatacctatacaaagtttatacaagttgaaagaaatattttagaatgctcaag 7486  T
Q  285 aggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaa 384  Q
    | |||||||   ||||| ||||||| ||||||||| ||||||||||||| ||||||||||||                    ||||| ||||||||| ||    
T  7487 atgtcccct-tgtgcacgaagcaaaattcagaaagaggctgactaaggttcacttcgcttaa--------------------gcgactggcttacagaaa 7565  T
Q  385 gtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacagg 468  Q
    || ||||||| ||||||||| |||| | |  |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7566 gtctgggttctgctcgcttagggttcgtttgcggttcgcttaagcgaacttctgacagaatcaaaatggtttttcgctcacagg 7649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 254 - 471
Target Start/End: Original strand, 16086 - 16303
Alignment:
Q  254 aagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacg 352  Q
    ||||||||||  | |||| | ||||||||||||| |||||| | ||||| | |||||||||| |||||||||||||||||||  ||||||||||||||||    
T  16086 aagttgaaaggaacatttaaaaatgctcaaaaggatcccct-agtgcacgaggcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacg 16184  T
Q  353 gctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatg 452  Q
    | ||| |||||| |||||||||||||||| ||||| |||||| ||||||| |||||| |||  ||||||| || ||||||||||||||| ||| ||| ||    
T  16185 gttagctcgcttaagcgaccggcttacagaaagttggggttccgctcgctaacggttcgcttgcggttcggttaagcgaacttctgacataatgaaattg 16284  T
Q  453 gtttttcgctcacaggttc 471  Q
     ||||||||| || |||||    
T  16285 atttttcgcttacgggttc 16303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 273 - 465
Target Start/End: Complemental strand, 9358 - 9167
Alignment:
Q  273 agaatgctcaaaaggtcccctcaatgcacaaagcaaa-gttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgac 371  Q
    ||||||||||| | ||||||||| ||||| ||| ||| ||| |||||  |||||||||||   ||||||||||||||||||||||| |||||| ||||||    
T  9358 agaatgctcaagaagtcccctca-tgcactaagtaaaagtttagaaaa-ggctgactaagactcacttcgcttaagcgacggctagctcgcttaagcgac 9261  T
Q  372 cggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 465  Q
    |  ||||||||| || ||||||||| ||||||| || | |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  9260 caacttacagtaggtctgggttcagttcgcttatgggtcgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttttcgctcac 9167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 9628 - 9512
Alignment:
Q  13 aacctgtgtatatctacatacaacttaacca-tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||  || |||||  | | ||||||||||||||   |||||| ||||||    
T  9628 aacctgtgtatatctacatacaactcaactactacatatatttcatatgacttaatactccacaact-cgacaatccagaacatatacaattatttataa 9530  T
Q  112 ttatgcacatacatcaat 129  Q
    | ||||||||||||||||    
T  9529 tcatgcacatacatcaat 9512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 234 - 409
Target Start/End: Original strand, 30195 - 30370
Alignment:
Q  234 tacctatacaaggattatataagttgaaagagatattttagaatgctcaaaa-ggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaagg 332  Q
    ||||||||||||| ||||| ||||||||||| | |||||||||||||||||| |||||||| | ||||| ||||||| ||||||||||||||||||||||    
T  30195 tacctatacaagggttatacaagttgaaagaaacattttagaatgctcaaaagggtcccct-agtgcacgaagcaaaattcagaaagtggctgactaagg 30293  T
Q  333 tccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtt 409  Q
      |||||||||||||||| || | | |||||| |||||||||||||||| |||||| ||||  ||||||| ||||||    
T  30294 ctcacttcgcttaagcgaaggttggctcgcttaagcgaccggcttacagaaagtttaggtttcgctcgctcacggtt 30370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 78 - 191
Target Start/End: Complemental strand, 7670 - 7557
Alignment:
Q  78 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaatgtaatatataatcacttgatttcatactcagtcatctc 177  Q
    |||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||  || |||||| ||||||||||||||||||| |||||||    
T  7670 tccaacaacccagaacatacccaattaattataattatgctcatacatcaatttcattcaacatactatatattcacttgatttcatactcaatcatctc 7571  T
Q  178 caaaatttactaac 191  Q
    ||||||| ||||||    
T  7570 caaaattcactaac 7557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 7798 - 7730
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccacacttccaacaa 85  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||| |||| || || |||||||||    
T  7798 tgtgtatatctacatacaacttaacaatgcatatgtttcatatgacttgcaactccgcaattccaacaa 7730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 275 - 471
Target Start/End: Complemental strand, 766 - 581
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 373  Q
    ||||||||||||| |||||| | ||||| | |||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  766 aatgctcaaaaggatcccct-agtgcacgacgcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctagttcgcttaagcgaccg 668  T
Q  374 gcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 471  Q
    |||||||| ||||| |||||  ||||           ||| ||||||||||||||||||||||||||||||| ||| || ||||||||| || |||||    
T  667 gcttacagaaagttggggtttcgctc-----------gctgacggttcgcttgagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 372
Target Start/End: Complemental strand, 7702 - 7605
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgacc 372  Q
    ||||||||||||| |||||| | ||||| | |||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||| |||||||    
T  7702 aatgctcaaaaggatcccct-agtgcacgacgcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctagttcgcttaagcgacc 7605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 275 - 432
Target Start/End: Complemental strand, 4011 - 3854
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 373  Q
    ||||||||||||| || ||| ||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  4011 aatgctcaaaagggtctcct-aatgcacgaggcaacgttcaaaaagtggctgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgaccg 3913  T
Q  374 gcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaa 432  Q
    ||||||||| ||| ||||||| ||||  |||||||| |||  |||||||||| ||||||    
T  3912 gcttacagtgagtctgggttctgctcaattacggttcgcttgcggttcgcttaagcgaa 3854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 238 - 443
Target Start/End: Complemental strand, 19166 - 18961
Alignment:
Q  238 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 336  Q
    ||||||| | ||||||||||||||||| | |||||| ||||||||||||| |||||| | ||||| ||||||| |||| ||||||||||||||||  ||     
T  19166 tatacaaaggttatataagttgaaagaaacattttaaaatgctcaaaaggatcccct-agtgcacgaagcaaaattcaaaaagtggctgactaagaccct 19068  T
Q  337 cttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttc 436  Q
    ||||||||| | ||||||| | ||| || |||||| |||| ||||  |||| |||||| ||||||| | || | ||||||||||||||| ||||||||||    
T  19067 cttcgcttaggagacggctggctcggttaagcgactggctcacagacagttggggttccgctcgctaatggctcgctcacggttcgcttaagcgaacttc 18968  T
Q  437 tgacaga 443  Q
    |||||||    
T  18967 tgacaga 18961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 238 - 443
Target Start/End: Original strand, 1117 - 1322
Alignment:
Q  238 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 336  Q
    ||||||| | ||||| ||||||||||| | |||||| ||||||||||||| |||||| | ||||| ||||||| |||| ||||||||||||||||  ||     
T  1117 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggatcccct-agtgcacgaagcaaaattcaaaaagtggctgactaagaccct 1215  T
Q  337 cttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttc 436  Q
    ||||||||||||||||||| | |||||| ||||||||||| ||||  |||| || ||| ||||||| | || |   ||||||||||||| ||||||||||    
T  1216 cttcgcttaagcgacggctggctcgcttaagcgaccggctcacagagagttgggtttccgctcgctaatggctcaatcacggttcgcttaagcgaacttc 1315  T
Q  437 tgacaga 443  Q
    |||||||    
T  1316 tgacaga 1322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 125 - 444
Target Start/End: Complemental strand, 82082 - 81764
Alignment:
Q  125 tcaatttcattcaatgtaatatataatcacttgatttcatactcagtcatctccaaaatttactaacatcaaccaaattcgatcatcagagcgttta-gt 223  Q
    |||| |||||||||  ||||||||| ||||||| |||||||||||  ||| ||||||||| |||||  |||||||| |||||  | ||  | ||||| ||    
T  82082 tcaagttcattcaacataatatatattcacttggtttcatactcaaacatatccaaaattcactaaattcaaccaa-ttcgactaccaatgtgtttaagt 81984  T
Q  224 agggttctgctacctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtgg 322  Q
    ||| ||| | | | ||||||||| ||||| ||||||||||| | |||||| ||||||||||||| | ||||   || || ||||||| |||| |||||||    
T  81983 aggattcag-tgcatatacaagggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccctgg-tgtacgaagcaaaattcaaaaagtgg 81886  T
Q  323 ctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcg 422  Q
    |||||||||  | |||||||||||||||||||| | |||||| |||||||| |||||||  ||||  ||||  ||||||| || ||| ||| ||||||||    
T  81885 ctgactaagacctacttcgcttaagcgacggctggctcgcttaagcgaccgacttacagagagttgaggtttcgctcgctaacagttcgcttacggttcg 81786  T
Q  423 cttgagcgaacttctgacagaa 444  Q
    ||| |||||||||||| |||||    
T  81785 cttaagcgaacttctggcagaa 81764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 279 - 449
Target Start/End: Complemental strand, 80206 - 80036
Alignment:
Q  279 ctcaaaaggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggctta 378  Q
    |||||||||  |||| | ||||| |||||| |||||||||  ||||||||||    || |||||||||||||||||||| |||||| |||||||  ||||    
T  80206 ctcaaaaggatcccttagtgcacgaagcaaggttcagaaaaaggctgactaacactcagttcgcttaagcgacggctagctcgcttaagcgaccatctta 80107  T
Q  379 cagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaa 449  Q
    ||||| || ||||||||| |||||||||| | |||||||| |||||| |||||| |  || ||||||||||    
T  80106 cagtaggtctgggttcagttcgcttacgggtcgctcacggctcgcttaagcgaattcttggcagaatcaaa 80036  T

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Target: scaffold0124 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 306 - 471
Target Start/End: Complemental strand, 35015 - 34861
Alignment:
Q  306 caaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttac 405  Q
    ||||||||| |||||||||||||||||||  |||||||||||||| ||||||||||||| |||||||||||||||| |||||  ||||| ||||          
T  35015 caaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgatggctagttcgcttaagcgaccggcttacagaaagttgaggttccgctc------ 34922  T
Q  406 ggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcacaggttc 471  Q
         ||| ||||||||||||||||||||||||||||||| ||| || ||||||||| || |||||    
T  34921 -----gctgacggttcgcttgagcgaacttctgacagaatgaaattgatttttcgcttacgggttc 34861  T

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Target: scaffold0029 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 358 - 465
Target Start/End: Original strand, 111271 - 111378
Alignment:
Q  358 ttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttt 457  Q
    ||||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||||||||||||||||||||  ||||||||||||||||||||    
T  111271 ttcgcttaagcgaccaacttacagtaggtatgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatcaaaatggtttt 111370  T
Q  458 tcgctcac 465  Q
    ||||||||    
T  111371 tcgctcac 111378  T

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Target: scaffold0029; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 338 - 449
Target Start/End: Complemental strand, 91858 - 91747
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||||||||||| ||||||||      
T  91858 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgggcgaactttg 91759  T
Q  438 gacagaatcaaa 449  Q
    ||||||||||||    
T  91758 gacagaatcaaa 91747  T

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Target: scaffold0029; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 338 - 449
Target Start/End: Complemental strand, 97584 - 97473
Alignment:
Q  338 ttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttct 437  Q
    |||||||||||||||||||| |||||| |||||||  ||||||||| || ||||||||| |||||||||| | |||||||||||||||| ||||||||      
T  97584 ttcgcttaagcgacggctagctcgcttaagcgaccaacttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgggcgaactttg 97485  T
Q  438 gacagaatcaaa 449  Q
    ||||||||||||    
T  97484 gacagaatcaaa 97473  T

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Target: scaffold0029; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 110939 - 111126
Alignment:
Q  13 aacctgtgtatatctacatacaacttaaccat-acatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataa 111  Q
    ||||||||||||||||||||||||| ||| || |||||| ||||||||||||||| || |||||  || | ||||||||||| | | |||||| ||||||    
T  110939 aacctgtgtatatctacatacaactcaactattacatatatttcatatgacttactactccacaactcga-caatccagaacctacacaattatttataa 111037  T
Q  112 ttatgcacatacatcaatttcattc--aatgtaatat------ataatcacttgatttcatactcagtcatctccaaaatttactaaca 192  Q
    ||| ||||||||||||||  |||||   |||| ||||      ||| ||||||| |||||||| || |||||||||| |||||||||||    
T  111038 ttacgcacatacatcaatcacattccacatgttatatatatacatattcacttgttttcatacacaatcatctccaacatttactaaca 111126  T

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Target: scaffold0310 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 305 - 406
Target Start/End: Original strand, 6876 - 6976
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 404  Q
    |||||||||| ||||||||||||| |||||  ||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||    
T  6876 gcaaagttca-aaagtggctgactgaggtcatcttcgcttaagcgacggctagctcgcttaagcgaccggcttacagtaagtctgggttctgctcgctta 6974  T
Q  405 cg 406  Q
    ||    
T  6975 cg 6976  T

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Target: scaffold0924 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 366 - 465
Target Start/End: Complemental strand, 1442 - 1343
Alignment:
Q  366 agcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 465  Q
    ||||||| |||||||||| || ||||||||| |||||||||| | |||||||||||||||||||||||||  |||||||||||||| |||||||||||||    
T  1442 agcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttgagcgaactttggacagaatcaaaattgtttttcgctcac 1343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 275 - 409
Target Start/End: Complemental strand, 4329 - 4195
Alignment:
Q  275 aatgctcaaaaggtcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccgg 374  Q
    |||||||||||||| | |  ||||||| | |||| |||||  ||||| |||||||||||| ||||||||||||||||| ||||||||||| ||||| | |    
T  4329 aatgctcaaaaggttctcctaatgcacgaggcaacgttcaagaagtgactgactaaggtcaacttcgcttaagcgacgtctagttcgcttaagcgatcag 4230  T
Q  375 cttacagtaagtttgggttcagctcgcttacggtt 409  Q
    |||||||||||| ||||||| ||||| ||||||||    
T  4229 cttacagtaagtctgggttctgctcgattacggtt 4195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 18025 - 17972
Alignment:
Q  80 caacaatccagaacatgcccaattaattataattatgcacatacatcaatttca 133  Q
    |||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  18025 caacaatccagaacatacacaattaattataattatgctcatacatcaatttca 17972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 23658 - 23605
Alignment:
Q  80 caacaatccagaacatgcccaattaattataattatgcacatacatcaatttca 133  Q
    |||||||||||||||| | ||||||||||||||||||| |||||||||||||||    
T  23658 caacaatccagaacatacacaattaattataattatgctcatacatcaatttca 23605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 248 - 409
Target Start/End: Original strand, 65414 - 65575
Alignment:
Q  248 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 346  Q
    ||||| ||||||||||| | |||||| |||| |||||||| |||||| | ||||| | ||||| |||| |||||||||||||||||||  || |||||||    
T  65414 ttatacaagttgaaagaaacattttaaaatgttcaaaaggatcccct-agtgcacgaggcaaaattcaaaaagtggctgactaaggtcttctccgcttaa 65512  T
Q  347 gcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtt 409  Q
    | ||||||| |||||||| ||||||||||||||||  |||| |||||| ||||||| ||||||    
T  65513 gtgacggctggttcgcttaagcgaccggcttacagagagttggggttccgctcgctaacggtt 65575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 316 - 443
Target Start/End: Original strand, 1445 - 1572
Alignment:
Q  316 aaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctca 415  Q
    ||||||||||||||||  |   ||||||||||||| |||| | |||||| ||||||||||| ||||  |||| |||||| |||||||   || | |||||    
T  1445 aaagtggctgactaagaccttgttcgcttaagcgaaggctggctcgcttaagcgaccggctgacagagagttggggttccgctcgctactggctcgctca 1544  T
Q  416 cggttcgcttgagcgaacttctgacaga 443  Q
    |||||||||| || ||||||||||||||    
T  1545 cggttcgcttaagtgaacttctgacaga 1572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 269 - 433
Target Start/End: Original strand, 17497 - 17661
Alignment:
Q  269 ttttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgag 367  Q
    ||||||||||||||||||| || ||| | ||||| || |||| ||||||||||||||||| ||||  |||||||||||||||| |||| | |||||| ||    
T  17497 ttttagaatgctcaaaaggctcgcct-agtgcacgaaacaaaattcagaaagtggctgaccaaggctcacttcgcttaagcgaaggctggctcgcttaag 17595  T
Q  368 cgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaac 433  Q
    |||||||||||||| |||||||||||  ||||||| || ||| |||  ||| || |||||||||||    
T  17596 cgaccggcttacagaaagtttgggtttcgctcgctcacagttcgcttgcgggtctcttgagcgaac 17661  T

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Target: scaffold0235 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 305 - 458
Target Start/End: Complemental strand, 23334 - 23192
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta 404  Q
    |||||||||| |||||||||||||||||||  ||||||||||||||||||||| ||||||  || ||||||| |||| ||||| ||||||| |||         
T  23334 gcaaagttcaaaaagtggctgactaaggtcatcttcgcttaagcgacggctagctcgcttaggcaaccggctcacagaaagttggggttcaactc----- 23240  T
Q  405 cggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggttttt 458  Q
          ||| |||||||||||||||||||||||| |||||| ||||||||||||    
T  23239 ------gctgacggttcgcttgagcgaacttctggcagaatgaaaatggttttt 23192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 458
Target Start/End: Complemental strand, 15647 - 15475
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 373  Q
    ||||||||||||| |||||| | ||||| | ||||| |||| |||||||||||||||||||  |||||||||||||| |||||| || ||| |||||| |    
T  15647 aatgctcaaaaggatcccct-agtgcacgaggcaaatttcaaaaagtggctgactaaggtcatcttcgcttaagcgatggctagctcacttaagcgactg 15549  T
Q  374 gcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaaatggttttt 458  Q
    ||| |||| ||||| |||||| ||||           ||| |||||||||||||||||||||||| |||||| ||||||||||||    
T  15548 gctcacagaaagttggggttccgctc-----------gctgacggttcgcttgagcgaacttctggcagaatgaaaatggttttt 15475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 256 - 471
Target Start/End: Original strand, 116183 - 116388
Alignment:
Q  256 gttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggc 354  Q
    ||||||||| | |||||| ||| ||||||||| |||||| | ||||| | |||||||||| ||| |||||||||||||||  ||||||||||||||||||    
T  116183 gttgaaagaaacattttaaaatactcaaaaggatcccct-agtgcacgaggcaaagttcaaaaaatggctgactaaggtcatcttcgcttaagcgacggc 116281  T
Q  355 tagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaat-caaaatgg 453  Q
    | |||||||| ||||||||||||||||  |||| || ||  ||||           ||| |||||||||||||||||||||||||||||||  ||||||     
T  116282 tggttcgcttaagcgaccggcttacagagagttgggatttcgctc-----------gctaacggttcgcttgagcgaacttctgacagaatgaaaaatga 116370  T
Q  454 tttttcgctcacaggttc 471  Q
    ||||||||| || |||||    
T  116371 tttttcgcttacgggttc 116388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 275 - 409
Target Start/End: Complemental strand, 129355 - 129221
Alignment:
Q  275 aatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccg 373  Q
    ||||||||||||| |||||| | ||||| ||||||| |||| ||||||||||||||||  |  ||||||||||||||||||| | |||||| ||||||||    
T  129355 aatgctcaaaaggatcccct-agtgcacgaagcaaaattcaaaaagtggctgactaagaccttcttcgcttaagcgacggctggctcgcttaagcgaccg 129257  T
Q  374 gcttacagtaagtttgggttcagctcgcttacggtt 409  Q
    ||| |||| ||||| |||||| ||||||| ||||||    
T  129256 gctcacagaaagttggggttccgctcgctaacggtt 129221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 248 - 443
Target Start/End: Original strand, 51554 - 51749
Alignment:
Q  248 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 346  Q
    ||||| ||||||||||| | |||||| ||||||||||||| | |||| | ||||||||||||| |||| ||||||||||||||||  |  ||||||||||    
T  51554 ttatacaagttgaaagaaacattttaaaatgctcaaaaggattccct-agtgcacaaagcaaaattcaaaaagtggctgactaagaccttcttcgcttaa 51652  T
Q  347 gcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacaga 443  Q
    ||||||||| | |||||| || |||| ||| | ||  ||||  ||||  ||||||| |||||| ||  ||||||||||| |||||||||||| ||||    
T  51653 gcgacggctggctcgcttaagtgaccagctcatagagagttgaggtttcgctcgctaacggttcgcatacggttcgcttaagcgaacttctggcaga 51749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 449
Target Start/End: Complemental strand, 4345 - 4217
Alignment:
Q  321 ggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggtt 420  Q
    |||||||||| |  || ||||||||||||| ||||||||||||| ||||||| |||||||||| || ||||||||| |||||||||| | |||||||| |    
T  4345 ggctgactaacgctcagttcgcttaagcgatggctagttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggct 4246  T
Q  421 cgcttgagcgaacttctgacagaatcaaa 449  Q
    ||||| |||||| |  || ||||||||||    
T  4245 cgcttaagcgaattcttggcagaatcaaa 4217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 238 - 443
Target Start/End: Original strand, 121200 - 121406
Alignment:
Q  238 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 336  Q
    ||||||| | ||||| ||||||||||| | |||||| ||||||||||||| | |||| | ||||| |||||||  ||| ||||||||||||||||  |      
T  121200 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccct-agtgcacgaagcaaaagtcaaaaagtggctgactaagacctt 121298  T
Q  337 cttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta-cggtttgctcacggttcgcttgagcgaactt 435  Q
    |||||||||||||| |||| | |||||| ||| ||||||||||||  |||| | |||| ||||||| |  |||| ||||||||||||||  |||||||||    
T  121299 cttcgcttaagcgaaggctggctcgcttaagcaaccggcttacagagagttggtgttctgctcgctaaggggttcgctcacggttcgctcaagcgaactt 121398  T
Q  436 ctgacaga 443  Q
    ||| ||||    
T  121399 ctggcaga 121406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 238 - 443
Target Start/End: Original strand, 132077 - 132283
Alignment:
Q  238 tatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtcca 336  Q
    ||||||| | ||||| ||||||||||| | |||||| ||||||||||||| | |||| | ||||| |||||||  ||| ||||||||||||||||  |      
T  132077 tatacaaaggttatacaagttgaaagaaacattttaaaatgctcaaaaggattccct-agtgcacgaagcaaaagtcaaaaagtggctgactaagacctt 132175  T
Q  337 cttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgctta-cggtttgctcacggttcgcttgagcgaactt 435  Q
    |||||||||||||| |||| | |||||| ||| ||||||||||||  |||| | |||| ||||||| |  |||| ||||||||||||||  |||||||||    
T  132176 cttcgcttaagcgaaggctggctcgcttaagcaaccggcttacagagagttggtgttctgctcgctaaggggttcgctcacggttcgctcaagcgaactt 132275  T
Q  436 ctgacaga 443  Q
    ||| ||||    
T  132276 ctggcaga 132283  T

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Target: scaffold0139 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 472
Target Start/End: Complemental strand, 15733 - 15521
Alignment:
Q  248 ttatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaa 346  Q
    ||||| ||||||||||| | |||||  ||||||||||||| || ||| | ||||| | |||||||||| |||||||||||||||||||  ||||||||||    
T  15733 ttatacaagttgaaagaaacatttttaaatgctcaaaaggatctcct-agtgcacgaggcaaagttca-aaagtggctgactaaggtcatcttcgcttaa 15636  T
Q  347 gcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatc 446  Q
    ||||||| | |||||||| |||||||| |||| ||  ||||||||||    ||       ||| ||| ||||||||||||||||||||||||||| |||     
T  15635 gcgacggttggttcgcttaagcgaccgtcttatagagagtttgggtt----tc-------gttcgctaacggttcgcttgagcgaacttctgacataatg 15547  T
Q  447 aaaatggtttttcgctcacaggttct 472  Q
     ||||| ||||||||| || ||||||    
T  15546 gaaatgatttttcgcttacgggttct 15521  T

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Target: scaffold0020 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 256 - 409
Target Start/End: Complemental strand, 102656 - 102503
Alignment:
Q  256 gttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggc 354  Q
    ||||||||| |  ||||| ||| ||||||||| |||||| | ||||| | |||| ||||| |||||||| ||||||||||  |||||||||||||| |||    
T  102656 gttgaaagaaaccttttaaaatactcaaaaggatcccct-agtgcacgaggcaaggttcaaaaagtggccgactaaggtcatcttcgcttaagcgatggc 102558  T
Q  355 tagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtt 409  Q
    | |||||||| |||||||| ||||||| ||||| |||||| ||||||| ||||||    
T  102557 tggttcgcttaagcgaccgacttacagaaagttggggttccgctcgctgacggtt 102503  T

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Target: scaffold0023 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 356 - 449
Target Start/End: Original strand, 134867 - 134960
Alignment:
Q  356 agttcgcttgagcgaccggcttacagtaagtttgggttcagctcgcttacggtttgctcacggttcgcttgagcgaacttctgacagaatcaaa 449  Q
    ||||||||| ||||||| |||||||||| || ||||||||| |||||||||| | ||||||||||||||| |||||| |  |||||||||||||    
T  134867 agttcgcttaagcgaccagcttacagtaggtctgggttcagttcgcttacgggtcgctcacggttcgcttaagcgaattcttgacagaatcaaa 134960  T

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Target: scaffold1061 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 254 - 355
Target Start/End: Original strand, 1716 - 1817
Alignment:
Q  254 aagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacg 352  Q
    ||||||||||| | |||||| ||||||||||||| |||||| | ||||| | ||||| |||| |||||||||||||||||||  ||||||||||||||||    
T  1716 aagttgaaagaaacattttaaaatgctcaaaaggatcccct-agtgcacgaggcaaaattcaaaaagtggctgactaaggtcatcttcgcttaagcgacg 1814  T
Q  353 gct 355  Q
    |||    
T  1815 gct 1817  T

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Target: scaffold0107 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 305 - 402
Target Start/End: Complemental strand, 41267 - 41171
Alignment:
Q  305 gcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttcagctcgct 402  Q
    |||||||||| |||||| ||||||||||||  |||||||||||||||| ||||||||||| ||||| ||||| |||| | ||| |||||| |||||||    
T  41267 gcaaagttca-aaagtgtctgactaaggtcatcttcgcttaagcgacgtctagttcgcttaagcgatcggctcacagaaggttggggttccgctcgct 41171  T

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Target: scaffold0348 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 1587 - 1527
Alignment:
Q  78 tccaacaatccagaacatgcccaattaattataattatgcacatacatcaatttcattcaa 138  Q
    |||||||||||||||||| | |||||||||| |||||||| ||||||||||||||||||||    
T  1587 tccaacaatccagaacatacacaattaattaaaattatgctcatacatcaatttcattcaa 1527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 1716 - 1663
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatg-tttcatatgacttacaac 69  Q
    ||||||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  1716 tgtgtatatctacatacaacttaacaatgcatatgttttcatatgacttacaac 1663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 3107 - 3140
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatat 50  Q
    ||||||||||||||||||||| ||||||||||||    
T  3107 tgtgtatatctacatacaactcaaccatacatat 3140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 434
Target Start/End: Complemental strand, 11700 - 11569
Alignment:
Q  303 aagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc-agctcgc 401  Q
    |||||||||||||| || ||||||||||||  ||  |||||||||||| || |||||||||| ||||||| || ||||| |||||||| |||  ||||||    
T  11700 aagcaaagttcagatagaggctgactaaggctcagctcgcttaagcgaagggtagttcgcttaagcgaccagc-tacaggaagtttggattctcgctcgc 11602  T
Q  402 ttacggtttgctcacggttcgcttgagcgaact 434  Q
    | |||| | |||  ||||||||| |||||||||    
T  11601 tcacggatcgcttgcggttcgctcgagcgaact 11569  T

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Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 433
Target Start/End: Complemental strand, 493786 - 493588
Alignment:
Q  236 cctatacaaggattatataagttgaaagagatattttagaatgctcaaaagg-tcccctcaatgcacaaagcaaagttcagaaagtggctgactaaggtc 334  Q
    ||||||||||  ||||| ||| | ||||| | |||| | ||| ||||||||| |||||| | ||||| |||||| |||||||||  ||||||||||||      
T  493786 cctatacaagagttatacaagctaaaagaaacatttaaaaatactcaaaagggtcccct-agtgcacgaagcaaggttcagaaaaaggctgactaaggct 493688  T
Q  335 cacttcgcttaagcgacggctagttcgcttgagcgaccggcttacagtaagtttgggttc-agctcgcttacggtttgctcacggttcgcttgagcgaac 433  Q
    || ||||||||||||| || ||| |||||| ||||||| ||  |||  | |||  |||||  ||||||| |||||| |||||| ||||||||||||||||    
T  493687 cagttcgcttaagcgaagggtagctcgcttaagcgaccagcacacaaaaggttgaggttctcgctcgctcacggttcgctcacagttcgcttgagcgaac 493588  T

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Target: scaffold0001; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 174525 - 174440
Alignment:
Q  44 tacatatgtttcatatgacttacaaccccacacttccaacaatccagaacatgcccaattaattataattatgcacatacatcaat 129  Q
    ||||||| ||||| |||||||||  | || ||  || ||||||||||||||| | |||||| ||||||||||||||||||||||||    
T  174525 tacatatttttcaaatgacttactgctccgcaactcaaacaatccagaacatacacaattatttataattatgcacatacatcaat 174440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 381
Target Start/End: Original strand, 525142 - 525204
Alignment:
Q  319 gtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgaccggcttacag 381  Q
    ||||||||| |||| |  |||||||||||||| |||| |||||||| |||||||| |||||||    
T  525142 gtggctgaccaaggccttcttcgcttaagcgaaggctggttcgcttaagcgaccgtcttacag 525204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 415 - 465
Target Start/End: Original strand, 49595 - 49645
Alignment:
Q  415 acggttcgcttgagcgaacttctgacagaatcaaaatggtttttcgctcac 465  Q
    |||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  49595 acggttcgattgagcgaactttggacagaatcaaaatggtttttcgctcac 49645  T

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Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 152546 - 152599
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgt-ttcatatgacttacaac 69  Q
    ||||||||||||||||||||| |||||||||||| | | |||||||||||||||    
T  152546 tgtgtatatctacatacaactcaaccatacatatatgtacatatgacttacaac 152599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 45691 - 45747
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaacccca 73  Q
    ||||||||||||||||||||| ||| || ||||| | | ||||||||||||||||||    
T  45691 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaacccca 45747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 6020 - 5969
Alignment:
Q  19 tgtatatctacatacaacttaaccatacatatgt-ttcatatgacttacaac 69  Q
    ||||||||||||||||||| |||||||||||| | | |||||||||||||||    
T  6020 tgtatatctacatacaactcaaccatacatatatgtacatatgacttacaac 5969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 372
Target Start/End: Complemental strand, 24267 - 24192
Alignment:
Q  297 tgcacaaagcaaagttcagaaagtggctgactaaggtccacttcgcttaagcgacggctagttcgcttgagcgacc 372  Q
    ||||| ||||||||||||||||| | ||||||||||  ||  |||||||||||| || ||| |||||| |||||||    
T  24267 tgcacgaagcaaagttcagaaagagactgactaaggctcatctcgcttaagcgaaggatagctcgcttaagcgacc 24192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 433
Target Start/End: Complemental strand, 24106 - 24070
Alignment:
Q  397 ctcgcttacggtttgctcacggttcgcttgagcgaac 433  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  24106 ctcgcttacggttcgctcacggttcgcttaagcgaac 24070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 13789 - 13847
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccccaca 75  Q
    ||||||||||||||||||| | ||| || ||||| | | ||||||||||||||||||||    
T  13789 tgtgtatatctacatacaaatcaacaatgcatatatataatatgacttacaaccccaca 13847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 42924 - 42870
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaaccc 71  Q
    ||||||||||||||||||||| ||| || ||||| | | ||||||||||||||||    
T  42924 tgtgtatatctacatacaactcaacaatgcatatatataatatgacttacaaccc 42870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 46748 - 46695
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgt-ttcatatgacttacaac 69  Q
    |||||||||||||||||||||| || || ||||| | |||||||||||||||||    
T  46748 tgtgtatatctacatacaacttgacaatgcatatatgttcatatgacttacaac 46695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 51021 - 50968
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgt-ttcatatgacttacaac 69  Q
    |||||||||||||||||||||| || || ||||| | |||||||||||||||||    
T  51021 tgtgtatatctacatacaacttgacaatgcatatatgttcatatgacttacaac 50968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1853 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1853
Description:

Target: scaffold1853; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 793 - 741
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacatatgtttcatatgacttacaac 69  Q
    ||||||||||||||||||||| ||  || ||||||| | ||||||||||||||    
T  793 tgtgtatatctacatacaactcaagaatgcatatgtataatatgacttacaac 741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 31790 - 31822
Alignment:
Q  17 tgtgtatatctacatacaacttaaccatacata 49  Q
    |||||||||||||||||||||||||||| ||||    
T  31790 tgtgtatatctacatacaacttaaccatgcata 31822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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