View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12436_low_2 (Length: 424)
Name: NF12436_low_2
Description: NF12436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12436_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 22 - 409
Target Start/End: Original strand, 49145538 - 49145911
Alignment:
| Q |
22 |
aatgattgattcaggagctgaaacagcttgcggatgaactacgttctgatgttattttcagtgtttcaagaactgggggacatttaggttcaagtttagg |
121 |
Q |
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| T |
49145538 |
aatgattgattcaggagctgaaacagcttgcggatgaactacgttctgatgttattttcagtgtttcaagaactgggggacatttaggttcaagtttagg |
49145637 |
T |
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| Q |
122 |
tgttgttgaactaactattgctcttcactatgtttttaatacacctcaggataagattttgtgggatgttggtcaccaggttagttggtgttgttatgtt |
221 |
Q |
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| T |
49145638 |
tgttgttgaactaactattgctcttcactatgtttttaatacacctcaggataagattttgtgggatgttggtcaccaggttagttggtgttgttatgtt |
49145737 |
T |
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| Q |
222 |
gtattagtttgttgaggattaaattctgtgtgatatttgtttgtgaattgaaatcttannnnnnnnnngcagtcataccctcataaaatacttactggta |
321 |
Q |
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| T |
49145738 |
gtctatgtttgttgaggtttaaattc-----------tgtttgtgatttgaaatctta---tgtttttgcagtcataccctcataaaatacttactggta |
49145823 |
T |
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| Q |
322 |
gaagggataagatgcataccatgagacagactaatggattgtctggatttacaaaacgttctgagagtgaatatgattcttttggcac |
409 |
Q |
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| T |
49145824 |
gaagggataagatgcataccatgagacagactaatggattgtctggatttacaaaacgttctgagagtgaatatgattcttttggcac |
49145911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 290 - 409
Target Start/End: Complemental strand, 6867580 - 6867461
Alignment:
| Q |
290 |
gcagtcataccctcataaaatacttactggtagaagggataagatgcataccatgagacagactaatggattgtctggatttacaaaacgttctgagagt |
389 |
Q |
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| T |
6867580 |
gcagtcatatccacataaaattctgactggtagaaggaataagatgcatactttgaggcagaaagatggattaagtgggtttacaaaacgctctgagagt |
6867481 |
T |
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| Q |
390 |
gaatatgattcttttggcac |
409 |
Q |
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|||| |||| ||||||||| |
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| T |
6867480 |
gaatttgatatttttggcac |
6867461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 6867837 - 6867668
Alignment:
| Q |
34 |
aggagctgaaacagcttgcggatgaactacgttctgatgttattttcagtgtttcaagaactgggggacatttaggttcaagtttaggtgttgttgaact |
133 |
Q |
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|||| |||||||| |||||| ||| || ||||| ||| ||||||||||||||||| ||||||||| ||||| || |||| | |||||||| ||||| |
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| T |
6867837 |
aggaactgaaacaacttgcgtgtgagctgcgttcagatattattttcagtgtttcacaaactgggggtcatttgggatcaaaccttggtgttgtggaact |
6867738 |
T |
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| Q |
134 |
aactattgctcttcactatgtttttaatacacctcaggataagattttgtgggatgttggtcaccaggtt |
203 |
Q |
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||| |||| || || |||||||| ||| | ||| || || || ||||||||||| ||||| |||||| |
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| T |
6867737 |
cactgttgccctccattatgttttcaatgctcctattgacaaaatcttgtgggatgtaggtcatcaggtt |
6867668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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