View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12437_high_1_N (Length: 477)

Name: NF12437_high_1_N
Description: NF12437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12437_high_1_N
NF12437_high_1_N
[»] chr7 (1 HSPs)
chr7 (12-477)||(230102-230569)
[»] chr3 (1 HSPs)
chr3 (231-477)||(12487951-12488197)
[»] chr6 (1 HSPs)
chr6 (156-477)||(21851089-21851410)
[»] scaffold0006 (1 HSPs)
scaffold0006 (42-99)||(70659-70716)


Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 12 - 477
Target Start/End: Original strand, 230102 - 230569
Alignment:
Q  12 taatactctaaatttcaattttgaggtcagacaatattgacgaaatttggcacatctgtgatagaaggtggaaccctcagtgcaagatagtgatcaaagc 111  Q
    |||||||||||||||||||||| |  | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  230102 taatactctaaatttcaattttcacttta-acaatattgacgaaatttggcacatctgtgatagaaggtggaaccctcagtgcaagatagtgatcaaagc 230200  T
Q  112 agccatcatcaatgtcttatcaactatttggttttccaggaatac---tagattcaaagataaaacaatacattggaagagtgtcatttctttaatctct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  230201 agccatcatcaatgtcttatcaactatttggttttccaggaatacaactagattcaaagataaaacaatacattggaagagtgccatttctttaatctct 230300  T
Q  209 tctaatgtagctttatctggtaacaactccaaagcttcatcaaactcatcaatgtcagatttttctatcatcaagaagttcagaattaatattcaccctc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||    
T  230301 tctaatgtagctttatctggtaacaactccaaagcttcatcaaactcatcaatgtcggatttttctatcatcaagaagttcagagttaatattcactctc 230400  T
Q  309 ctagggctcctcagatcaaagaggtcatatggcatcctcctattagtcattggattaaaggacatacatatggttcatcttctgctttagcttctgcaag 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  230401 ctagggctcctcagatcaaagaggtcatatggcatcctcctattagtcattggattaaaggaaatacatatggttcatcttctgctttagcttctgcaag 230500  T
Q  409 tggtattatttttagaaactctgaagttgattatttactttgcatatctgaaaatcttggtatggtttc 477  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  230501 tggtattatttttagaaactctaaagctgattatttactttgcatatctgaaaatcttggtatggtttc 230569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 231 - 477
Target Start/End: Original strand, 12487951 - 12488197
Alignment:
Q  231 acaactccaaagcttcatcaaactcatcaatgtcagatttttctatcatcaagaagttcagaattaatattcaccctcctagggctcctcagatcaaaga 330  Q
    |||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12487951 acaattccaaagcttcatcaaactcatcaatgtcggattttgctatcatcaagaagttcagagttaatattcaccctcctagggctcctcagatcaaaga 12488050  T
Q  331 ggtcatatggcatcctcctattagtcattggattaaaggacatacatatggttcatcttctgctttagcttctgcaagtggtattatttttagaaactct 430  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12488051 ggtcatatggcaccctcctattagtcattggattaaaggaaatacagatggttcatcttctgctttagcttctgcaagtggtattatttttagaaactct 12488150  T
Q  431 gaagttgattatttactttgcatatctgaaaatcttggtatggtttc 477  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  12488151 gaagctgattgtttactttgcatatctgaaaatcttggtatggtttc 12488197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 477
Target Start/End: Original strand, 21851089 - 21851410
Alignment:
Q  156 ctagattcaaagataaaacaatacattggaagagtgtcatttctttaatctcttctaatgtagctttatctggtaacaactccaaagcttcatcaaactc 255  Q
    |||||||||| ||||||  ||| || ||||||  ||  || |||||||| || || |||||  |||| |||||||||||||| |||||||  || || ||    
T  21851089 ctagattcaaggataaacaaattcactggaagtctgcaatctctttaatttcctcaaatgtgactttgtctggtaacaactctaaagctttttctaattc 21851188  T
Q  256 atcaatgtcagatttttctatcatcaagaagttcagaattaatattcaccctcctagggctcctcagatcaaagaggtcatatggcatcctcctattagt 355  Q
     || ||| | ||||||  ||||||||||||||| ||| | || ||||| ||||| || || ||||||||||| |||||  | ||||| ||||| |||||     
T  21851189 ttctatgactgattttgttatcatcaagaagtttagagtgaacattcatcctccaagagcccctcagatcaaggaggttttgtggcagcctcccattaga 21851288  T
Q  356 cattggattaaaggacatacatatggttcatcttctgctttagcttctgcaagtggtattatttttagaaactctgaagttgattatttactttgcatat 455  Q
     | ||||| |||||| | ||| |||| || || ||   || ||||||||| ||||| ||||| |||||| ||| | | |  ||||   | ||||||||||    
T  21851289 tactggatcaaaggaaacacagatggctcttcatcaaattcagcttctgctagtggcattatatttagagactttaatgcagattgcctgctttgcatat 21851388  T
Q  456 ctgaaaatcttggtatggtttc 477  Q
    ||||||||||||||||||||||    
T  21851389 ctgaaaatcttggtatggtttc 21851410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 70659 - 70716
Alignment:
Q  42 acaatattgacgaaatttggcacatctgtgatagaaggtggaaccctcagtgcaagat 99  Q
    ||||||| || || |||||||||||| |||||||| ||||||  ||||||||||||||    
T  70659 acaatatagaagatatttggcacatccgtgatagatggtggagtcctcagtgcaagat 70716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University