View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12437_high_2 (Length: 410)

Name: NF12437_high_2
Description: NF12437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12437_high_2
NF12437_high_2
[»] chr3 (8 HSPs)
chr3 (32-390)||(29821876-29822219)
chr3 (66-117)||(49333873-49333923)
chr3 (41-115)||(54653010-54653085)
chr3 (62-115)||(43102304-43102357)
chr3 (22-117)||(33149973-33150069)
chr3 (62-117)||(47807849-47807904)
chr3 (72-117)||(12992033-12992077)
chr3 (72-117)||(50259425-50259469)
[»] chr5 (3 HSPs)
chr5 (118-260)||(40880222-40880364)
chr5 (62-117)||(1663507-1663562)
chr5 (68-117)||(10084988-10085037)
[»] chr8 (4 HSPs)
chr8 (36-115)||(118777-118856)
chr8 (62-117)||(5777111-5777166)
chr8 (72-117)||(45436181-45436225)
chr8 (62-106)||(7487145-7487188)
[»] chr6 (2 HSPs)
chr6 (25-69)||(24546535-24546579)
chr6 (358-391)||(4030718-4030751)
[»] chr1 (2 HSPs)
chr1 (41-115)||(3978364-3978439)
chr1 (72-117)||(38961773-38961817)
[»] chr7 (3 HSPs)
chr7 (41-117)||(38407199-38407275)
chr7 (62-115)||(19279339-19279392)
chr7 (68-117)||(25154619-25154668)
[»] chr4 (1 HSPs)
chr4 (41-117)||(26791090-26791166)
[»] chr2 (1 HSPs)
chr2 (41-115)||(34039627-34039702)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 32 - 390
Target Start/End: Complemental strand, 29822219 - 29821876
Alignment:
Q  32 aacaagaacatttcttcattacaatatcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaacatgataaatgattgt 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  29822219 aacaagaacatttcttcattacaatatcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaatatgatagatgattgt 29822120  T
Q  132 tagagaagtagtgattattccaattcgagaagggatgggtctcctaaagaagaaaggaaggccggaagtttttctgaatattttcttcatgattcgataa 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  29822119 tagagaagtagtgattattccaattcgagaagggatgggtctcctaaaaaagaaaggaaggctggaagtttttctgaatattttcttcatgattccataa 29822020  T
Q  232 acgtacaatcattcaaatacatattacatgataactaacttcctagaaaatagcagttactaaactacataattctaaactgcataattatagaaactga 331  Q
    | ||||||||||||||||||||||||||||  ||||||||||||||||||| | ||||||||               |||||||||||||||||||||||    
T  29822019 aagtacaatcattcaaatacatattacatggaaactaacttcctagaaaatggtagttacta---------------aactgcataattatagaaactga 29821935  T
Q  332 ctattgcaattattttaaattataaataaactatttaacatatataattttgatgatgt 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29821934 ctattgcaattattttaaattataaataaactatttaacatatataattttgatgatgt 29821876  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 49333923 - 49333873
Alignment:
Q  66 atcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 117  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  49333923 atcaaccttttcaacaaccacaaacaccc-aatctcaatttcaacaacaaca 49333873  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 54653010 - 54653085
Alignment:
Q  41 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 115  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||||| | ||| |||||||||||||||||    
T  54653010 atttcttcattaccatcaacaacaacaacaaccttttcaacaaccacaaacatctcaaactcaatttcaacaacaa 54653085  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 43102304 - 43102357
Alignment:
Q  62 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 115  Q
    ||||| |||||||||||| |||||||||||  |||||| |||||||||||||||    
T  43102304 caacaacaaccttttcaacaaccacaaacattccaatcccaatttcaacaacaa 43102357  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 33149973 - 33150069
Alignment:
Q  22 catcatcaacaacaagaaca-tttcttcattacaatatcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 117  Q
    ||||| ||||||||| |||| ||| || || |||||| || || || |||||||| ||| ||||| ||||||||||||  |||||||||||||||||    
T  33149973 catcaacaacaacaacaacaattttttaatcacaataacaacagcagcaacctttgcaagaaccataaacaccccaatggcaatttcaacaacaaca 33150069  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 47807904 - 47807849
Alignment:
Q  62 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 117  Q
    ||||| |||||||||| | ||||||||||| |  ||||||||||||||||||||||    
T  47807904 caacaacaaccttttcgacaaccacaaacatcttaatctcaatttcaacaacaaca 47807849  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 12992077 - 12992033
Alignment:
Q  72 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 117  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  12992077 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 12992033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 50259425 - 50259469
Alignment:
Q  72 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 117  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  50259425 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 50259469  T

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Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 118 - 260
Target Start/End: Original strand, 40880222 - 40880364
Alignment:
Q  118 tgataaatgattgttagagaagtagtgattattccaattcgagaagggatgggtctcctaaagaagaaaggaaggccggaagtttttctgaatattttct 217  Q
    ||||| |||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||    
T  40880222 tgatagatgattgttaaagaagtagtgattatcccaattcgagaagggatgagtctcctaaagaagaaaggaaggctgtaagtttttatgaatattttct 40880321  T
Q  218 tcatgattcgataaacgtacaatcattcaaatacatattacat 260  Q
    | ||||||| | ||||||||||||||||||||||| |||||||    
T  40880322 taatgattcaacaaacgtacaatcattcaaatacacattacat 40880364  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 1663507 - 1663562
Alignment:
Q  62 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 117  Q
    ||||| |||| ||||||| ||||||||||| | |||||||||||||||||||||||    
T  1663507 caacaacaactttttcaacaaccacaaacatctcaatctcaatttcaacaacaaca 1663562  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 10084988 - 10085037
Alignment:
Q  68 caaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 117  Q
    |||||||||||| |||||| ||||  ||||||||||||||||||||||||    
T  10084988 caaccttttcaacaaccacgaacattccaatctcaatttcaacaacaaca 10085037  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 118856 - 118777
Alignment:
Q  36 agaacatttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 115  Q
    |||| |||||||||| ||||| | || ||||||||||||||||| || ||| ||||||||||||||||||||||| |||||    
T  118856 agaaaatttcttcatcacaattagcaacaacatcaaccttttcataa-ccataaacaccccaatctcaatttcaataacaa 118777  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 117
Target Start/End: Complemental strand, 5777166 - 5777111
Alignment:
Q  62 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 117  Q
    ||||| |||||||||||| || | |||||| ||||||||||||| |||||||||||    
T  5777166 caacaacaaccttttcaacaatctcaaacaacccaatctcaattccaacaacaaca 5777111  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 45436225 - 45436181
Alignment:
Q  72 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 117  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  45436225 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 45436181  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 7487188 - 7487145
Alignment:
Q  62 caacatcaaccttttcaaaaaccacaaacaccccaatctcaattt 106  Q
    ||||||||||||||||| || ||| ||||||||||||||||||||    
T  7487188 caacatcaaccttttcataa-ccataaacaccccaatctcaattt 7487145  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 24546579 - 24546535
Alignment:
Q  25 catcaacaacaagaacatttcttcattacaatatcagcaacatca 69  Q
    |||||||||||||||||||||||||| |||||| |||||||||||    
T  24546579 catcaacaacaagaacatttcttcatcacaataccagcaacatca 24546535  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 391
Target Start/End: Complemental strand, 4030751 - 4030718
Alignment:
Q  358 taaactatttaacatatataattttgatgatgtc 391  Q
    ||||||||||||||| ||||||||||||||||||    
T  4030751 taaactatttaacatgtataattttgatgatgtc 4030718  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 3978364 - 3978439
Alignment:
Q  41 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 115  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||||| | ||| |||||||||||||||||    
T  3978364 atttcttcattaccatcaacaacaacaacaaccttttcaacaaccacaaacatctcaaactcaatttcaacaacaa 3978439  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Complemental strand, 38961817 - 38961773
Alignment:
Q  72 cttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 117  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||    
T  38961817 cttttcaacaaccacaaataccc-aatctcaatttcaacaacaaca 38961773  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 38407275 - 38407199
Alignment:
Q  41 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 117  Q
    |||||||||| ||||| | || ||||||||||||||||| || ||| || ||||| ||||||||||||||||||||||    
T  38407275 atttcttcatcacaattagcaacaacatcaaccttttcataa-ccataatcaccctaatctcaatttcaacaacaaca 38407199  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 19279392 - 19279339
Alignment:
Q  62 caacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 115  Q
    ||||| |||||||||||| ||||||||||| | ||| |||||||| ||||||||    
T  19279392 caacaacaaccttttcaacaaccacaaacatctcaaactcaattttaacaacaa 19279339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 25154668 - 25154619
Alignment:
Q  68 caaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 117  Q
    |||| ||||||| |||||||||||| |||||||||| | |||||||||||    
T  25154668 caactttttcaacaaccacaaacactccaatctcaaatccaacaacaaca 25154619  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 26791166 - 26791090
Alignment:
Q  41 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaaca 117  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||||| ||| ||||||||||||||| |||||    
T  26791166 atttcttcattaccatgaacaacaacaacaaccttttcaacaaccacaaacatccc-atctcaatttcaacagcaaca 26791090  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 34039627 - 34039702
Alignment:
Q  41 atttcttcattacaat-atcagcaacatcaaccttttcaaaaaccacaaacaccccaatctcaatttcaacaacaa 115  Q
    ||||||||||||| || | || ||||| |||||||||||| ||||||||| |  |||||| |||||||||||||||    
T  34039627 atttcttcattaccatcaacaacaacaacaaccttttcaacaaccacaaatattccaatcccaatttcaacaacaa 34039702  T

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