View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12437_high_3 (Length: 334)
Name: NF12437_high_3
Description: NF12437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12437_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 21 - 216
Target Start/End: Complemental strand, 38749514 - 38749319
Alignment:
| Q |
21 |
aattttatgaacattttaataaacaaatatacaaaagtaaaagtaaactaagctcacaaaatttattctatctttgatctagtatacaagtgaataaaaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38749514 |
aattttatgaacattttaataaacaaatatacaaaagtaaaagtaaactaagctcacaaaatttattctatctttaatctagtatacaagtgaataaaaa |
38749415 |
T |
|
| Q |
121 |
actttccgtttgttaggagcatatgtataagaatggacgagcttaagcttaatctagagatgtttatattttaatattttaagtgtgagtaaaagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
38749414 |
actttccgtttgttaggagcatatgtataagaatggacgagcttaagcttaatctagagatgtttatattataatattttaagtgtgagttaaagt |
38749319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University