View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12437_low_1 (Length: 398)
Name: NF12437_low_1
Description: NF12437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12437_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 9 - 390
Target Start/End: Complemental strand, 8349516 - 8349135
Alignment:
| Q |
9 |
agcagagacccacacggccacacccaacataaatcacttgaactaatgtgttttgaagagagnnnnnnnaaacttatcttacgaaacaagagcattcaac |
108 |
Q |
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| T |
8349516 |
agcagtgacccacacggccacacccaacataaatcacttgaactaatgtgttttgaagagaattttgttaaacttatcttacgaaacaagagcattcaat |
8349417 |
T |
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| Q |
109 |
aagctcttacaattgtgaagtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcatgacagttggttagcaaacaagagcgtgtc |
208 |
Q |
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| T |
8349416 |
aagctcttacaattgtgaagtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcatgacaattggttagtaaacaagagcgtgtc |
8349317 |
T |
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| Q |
209 |
acaaccattgatgcacattgtaccgaatcagcaacttaccgtccatgatttgctgccgaatggatnnnnnnntggaatttagatgtgcttcagcagttca |
308 |
Q |
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| T |
8349316 |
acaaccattgatgcacattgtaccgaatcagcaatttaccgtccatgatttgctgccgaatggataaaaaagtggaaattagatgtgcttcagcagttca |
8349217 |
T |
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| Q |
309 |
gctgtaccccttttcctctttgtggggccggacgagcgtatttggaggctggaaagacatggaaacagtcagctcacaggtt |
390 |
Q |
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| T |
8349216 |
gctgtaccccttttcctctttgtggggccggacgagcgtatttggaggctggaaagacatggaaacagtcagctcacaggtt |
8349135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 38 - 271
Target Start/End: Original strand, 11993792 - 11994025
Alignment:
| Q |
38 |
taaatcacttgaactaatgtgttttgaagagagnnnnnnnaaacttatcttacgaaacaagagcattcaacaagctcttacaattgtgaagtttggtaaa |
137 |
Q |
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| T |
11993792 |
taaatcacttgaactaatgtttttggaagatagtttttttaaacttctcttacaaaa-aagagcattcaagaagctattccaattgcgaagcgaggtaca |
11993890 |
T |
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| Q |
138 |
aaatggaaggttggtagtggggagaacgtccgggtatttcatgacagttggtt-agcaaacaagagcgtgtcacaaccattgatgcacattgtaccgaat |
236 |
Q |
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| T |
11993891 |
agatggaaggttggtagtggagagaatatccgggtgttttatgacaattggtttagcaaacaagagcatggaacaaccattgatgcacattgtactgaat |
11993990 |
T |
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| Q |
237 |
cagcaacttaccgtccatgatttgctgccgaatgg |
271 |
Q |
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| T |
11993991 |
cagcaacttaaagtccgagatttgctgcagaatgg |
11994025 |
T |
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