View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12438_high_6 (Length: 272)
Name: NF12438_high_6
Description: NF12438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12438_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 17530164 - 17530406
Alignment:
| Q |
14 |
agcagagacagcaacaggatcaagaacccaagggatattcaactgagagcatagattagcagcagctatcatagaaggaagagaagaagatgagagtgtt |
113 |
Q |
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| T |
17530164 |
agcagagacagcaacaggatcaagaacccaagggatatccaactgagagcatagcttagcagcagctatcatagcaggaagagaagaagatgagagtgtt |
17530263 |
T |
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| Q |
114 |
ccaacattaagacagagagcactgacacgtggagtgaattcatgaatctcttcgagtgaatgaaccatagctggtgatgctccagctgataagagagtat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |
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| T |
17530264 |
ccaacattaagacagagagcactgacacgtggagtgaattcatgaatctcttcgagtgaatgaaccattgcaggtgatgcaccagctgataagagagtat |
17530363 |
T |
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| Q |
214 |
tcgccattaaatccattgatacaaaattagttatgcattgaat |
256 |
Q |
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| T |
17530364 |
tcgccattaaatccattgatacaaaattagttatgcattgaat |
17530406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 256
Target Start/End: Complemental strand, 17656372 - 17656130
Alignment:
| Q |
14 |
agcagagacagcaacaggatcaagaacccaagggatattcaactgagagcatagattagcagcagctatcatagaaggaagagaagaagatgagagtgtt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17656372 |
agcagagacagcaacaggatcaagaacccaagggatattcaactgagagcatagcttagcagcagctatcatagcaggaagagaagaagatgagagtgtt |
17656273 |
T |
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| Q |
114 |
ccaacattaagacagagagcactgacacgtggagtgaattcatga-atctcttcgagtgaatgaaccatagctggtgatgctccagctgataagagagta |
212 |
Q |
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| T |
17656272 |
ccaacattaagacagagagcacttactcgtggagtgaattc-tgatatctcttcgagtgaatgaaccattgctggtgatgctccagctgataagagagta |
17656174 |
T |
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| Q |
213 |
ttcgccattaaatccattgatacaaaattagttatgcattgaat |
256 |
Q |
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| T |
17656173 |
ttcgccattaaatccattgatacgaaattagttatgcattgaat |
17656130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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