View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12438_low_1 (Length: 602)
Name: NF12438_low_1
Description: NF12438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12438_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 523; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 19 - 589
Target Start/End: Complemental strand, 29007684 - 29007114
Alignment:
| Q |
19 |
tatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaacagtgatccacctcac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007684 |
tatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaacagtgatccacctcac |
29007585 |
T |
|
| Q |
119 |
tgaatcaggaacacgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagttcaagctcagtccaacaacactgga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007584 |
tgaatcaggaacacgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagttcaagctcagtccaacaacactgga |
29007485 |
T |
|
| Q |
219 |
acttctcctccacctagttctccaccacgccctcattctcctcctagtccaccgaatggtgattctcctcctagtccaccacacagtgattcccctccta |
318 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29007484 |
acttctcctccacctagttctgcaccacgccctcattctcctcctagtccaccgaatggtgattctcctcctagtccaccacacagtgattctcctccta |
29007385 |
T |
|
| Q |
319 |
gtcctccagatgcacatgctaaagcgcctcgtgattgttcttgtgcagatgagggtcgtttgggcgttccattgattacactcgtaatcatccgagcttt |
418 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
29007384 |
gtcctccagatgcacatgctaaagcgccttgtgattgttcttgtgcagatgagggtcgtttgggtgttccattgattacactcgtaatcatcttagcttt |
29007285 |
T |
|
| Q |
419 |
cgcgtggtcttattgttttgttcacctttcagctatcaactagctagctcacactagacagtttatttcactgatgtgggtgtttggtcatttataatga |
518 |
Q |
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||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29007284 |
cgcttggtcttctttttttgttcacctttcagctatcaactagctagctcacactagacagtttatttcactgatgtgggtgtttggtcattcataatga |
29007185 |
T |
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| Q |
519 |
catagtgtttagtacatatagattgtgatttggtttagtgactttagtcaattgttccaaagtgggtgatg |
589 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29007184 |
catattgtttagtacatatagattgtgatttggtttagtgactttagtcaattgttccaaagtgagtgatg |
29007114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 21 - 271
Target Start/End: Original strand, 21409537 - 21409776
Alignment:
| Q |
21 |
tacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaacagtgatccacctcactg |
120 |
Q |
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|||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||||| ||| || |
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| T |
21409537 |
tacgacgtaattgaggtaaaccaacaagggtacaacacatgtacaatagcaaatgccatttcgacatacaactcaggagaaacagtgatccacgtcattg |
21409636 |
T |
|
| Q |
121 |
aatcaggaacacgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagttcaagctcagtccaacaacactggaac |
220 |
Q |
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| T |
21409637 |
aatcaggaaaacgctacttcgtttgtggcagaatgggccattgccaacaaggcctgaaactcaaagtcaaagttcaagctcagtccaacaaca------- |
21409729 |
T |
|
| Q |
221 |
ttctcctccacctagttctccaccacgccctcattctcctcctagtccacc |
271 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
21409730 |
----cctccacctatttctccaccatgccctcattctcctcctagtccacc |
21409776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 137 - 271
Target Start/End: Original strand, 21465429 - 21465563
Alignment:
| Q |
137 |
cttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctagt |
236 |
Q |
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||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21465429 |
cttcgtttgtggcagaatgggccattgccaacaaggcctgaaactcaaagtcaaagttcaagctcagtccaacaacactggaacttctcctccacctatt |
21465528 |
T |
|
| Q |
237 |
tctccaccacgccctcattctcctcctagtccacc |
271 |
Q |
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||||||||| ||||||||||||||||||||||||| |
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| T |
21465529 |
tctccaccatgccctcattctcctcctagtccacc |
21465563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 21461838 - 21461926
Alignment:
| Q |
33 |
gaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaacagtgatccacctcactga |
121 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||| ||||| ||||||||| |||||||||||||||||| |
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| T |
21461838 |
gaggtaaaccaacaagggtacaacacatgtacaatagcaaacgccgtttcgacatacaactctggagaaatagtgatccacctcactga |
21461926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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