View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12438_low_11 (Length: 218)
Name: NF12438_low_11
Description: NF12438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12438_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 25 - 206
Target Start/End: Complemental strand, 19768498 - 19768306
Alignment:
| Q |
25 |
cccaaatgaggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagagagagtgtta-----------tataaacaattt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19768498 |
cccaaatgaggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagagagagtgttaaaaaaaaatgatataaacaattt |
19768399 |
T |
|
| Q |
114 |
taagaaaatgtgaatcaaaataaaataaatggtccctatttatacatgagaagttctaaagaagagagacatggattcatgcatgcaacacag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19768398 |
taagaaaatgtgaatcaaaataaaataaatggtccctatttatacatgagaagtcctaaagaagagagacatggattcatgcatgcaacacag |
19768306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 29200010 - 29199824
Alignment:
| Q |
25 |
cccaaatgaggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagaga-----------gagtgttatataaacaattt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||| |
|
|
| T |
29200010 |
cccaaatgaggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagagaataataaaaaggaaag--atataaacaattt |
29199913 |
T |
|
| Q |
114 |
taagaaaatgtgaatcaaaataaaataaatggtccctatttatacatgagaagttctaaagaagagagacatggattcatgcatgcaaca |
203 |
Q |
| |
|
||||| | |||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |||||||||| |||||||||| |
|
|
| T |
29199912 |
taagacagtgtgaatcaaaataaagtaaatggtcc-tatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaaca |
29199824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 37616789 - 37616980
Alignment:
| Q |
25 |
cccaaatgaggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagagagagtgtta-----------tataaacaattt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
37616789 |
cccaaatgaggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagagagagtaataaaaagaaaagatataaacaattt |
37616888 |
T |
|
| Q |
114 |
taagaaaatgtgaatcaaaataaaataaatggtccctatttatacatgagaagttctaaagaagagagacatggattcatgcatgcaacaca |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37616889 |
taagaaaatgtgaatcaaaataaaataaatggtccctatttatacatgagaagtcctaaagaagagagacatggattcatgcatgcaacaca |
37616980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 203
Target Start/End: Original strand, 51389463 - 51389644
Alignment:
| Q |
33 |
aggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagagagagtgtta-----------tataaacaattttaagaaaa |
121 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||| || ||||| |||||||||| | |
|
|
| T |
51389463 |
aggggcttaaattctcgcaaatgcaaatccataaaaagatcaaacaaagaagttttagaaagagtgataaaaagaaaagatataagtaattttaagatga |
51389562 |
T |
|
| Q |
122 |
tgtgaatcaaaataaaataaatggtccctatttatacatgagaagttctaaagaagagagacatggattcatgcatgcaaca |
203 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| | |||||||||| |||||||||| |
|
|
| T |
51389563 |
tgtgaatcaaaataaaacaaatggtccctatttatacatgagaagtcctaaagaagagggtcatggattcaagcatgcaaca |
51389644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 22083098 - 22082999
Alignment:
| Q |
101 |
atataaacaattttaagaaaatgtgaatcaaaataaaataaatggtccctatttatacatgagaagttctaaagaagagagacatggattcatgcatgca |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22083098 |
atataaacaattttaagaaaatatgaat------aaaatatatggtccctatttatacatgagaagtcctaaagaagagagacatggattcatgcatgca |
22083005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 203
Target Start/End: Complemental strand, 32663143 - 32663049
Alignment:
| Q |
109 |
aattttaagaaaatgtgaatcaaaataaaataaatggtccctatttatacatgagaagttctaaagaagagagacatggattcatgcatgcaaca |
203 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||| ||||| ||||| | ||| ||||| |||||||||| |
|
|
| T |
32663143 |
aattttaagataatgtgaatcataataaaacaaacggtccctatttatacatgagaagtcctaaacaagagggtaatgaattcacgcatgcaaca |
32663049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 770592 - 770463
Alignment:
| Q |
33 |
aggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagagagagtgtt-----------atataaacaattttaagaaaa |
121 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||| | ||||||||||||| ||||| || ||| | |||||| |||||||||| | |
|
|
| T |
770592 |
aggggcttaaattctcgcaaatgcaaatccataaaaaggccaaacaaagaagttttagacagggtgataaaaagaaaagatataagtaattttaagatga |
770493 |
T |
|
| Q |
122 |
tgtgaatcaaaataaaataaatggtcccta |
151 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
|
|
| T |
770492 |
tgtgaatcaaaataaaacaaatggtcccta |
770463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University