View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12438_low_4 (Length: 391)
Name: NF12438_low_4
Description: NF12438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12438_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 7 - 194
Target Start/End: Original strand, 28654744 - 28654934
Alignment:
| Q |
7 |
ggagcagagatcagtgagaagttttgggatgagaaacttcaagtatgtgaacaccatcaaagctgctgtcgagaaagaatgtcccttgacagtgtcatgt |
106 |
Q |
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| T |
28654744 |
ggagcagacatcggtaagaagttttgggatgagaaatttcaagtatgtgaacaccatcaaagctgctgttgagaaagaatgtcccttgacagtgtcatgt |
28654843 |
T |
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| Q |
107 |
gctgacattgtcgctctttctgcgagagacggtattgcaatggtatgtttatg---tcatcttatacacatgctaggagtcgcctctcgga |
194 |
Q |
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| T |
28654844 |
gctgatattgttgctctttctgctagagacggtattgcaatggtatgtctatgtcatcatcatatacacatgttaggagttgcctctcgga |
28654934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 7 - 174
Target Start/End: Original strand, 28635463 - 28635630
Alignment:
| Q |
7 |
ggagcagagatcagtgagaagttttgggatgagaaacttcaagtatgtgaacaccatcaaagctgctgtcgagaaagaatgtcccttgacagtgtcatgt |
106 |
Q |
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| T |
28635463 |
ggagcagacatcggtgagaagttttgggatgagaaatttcaagtatgtgaataccatcaaagcagctgtcgagaaagaatgtcccttgacagtgtcatgc |
28635562 |
T |
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| Q |
107 |
gctgacattgtcgctctttctgcgagagacggtattgcaatggtatgtttatgtcatcttatacacat |
174 |
Q |
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| T |
28635563 |
gctgacattgtcgctctatctgctagagacggtattgcaatggtatgtctatgtcatcatatacacat |
28635630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 28605310 - 28605442
Alignment:
| Q |
22 |
gagaagttttgggatgagaaacttcaagtatgtgaacaccatcaaagctgctgtcgagaaagaatgtcccttgacagtgtcatgtgctgacattgtcgct |
121 |
Q |
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| T |
28605310 |
gagaagttttgggatgagaaacttcaagtatgtgagcaccatcaaagctgctcttgaaaaagaatgtcctttgacagtgtcatgcgctgacattgttgct |
28605409 |
T |
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| Q |
122 |
ctttctgcgagagacggtattgcaatggtatgt |
154 |
Q |
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| T |
28605410 |
ctttctgctagagacggtattgccagggtatgt |
28605442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 28663150 - 28663294
Alignment:
| Q |
11 |
cagagatcagtgagaagttttgggatgagaaacttcaagtatgtgaacaccatcaaagctgctgtcgagaaagaatgtcccttgacagtgtcatgtgctg |
110 |
Q |
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| T |
28663150 |
cagacatcagagagaagttccgggatgcgaaacttcaagtatgtaaaaaccatcaaagctgctgtggagaaagaatgtcccttgacagtatcatgtgccg |
28663249 |
T |
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| Q |
111 |
acattgtcgctctttctgcgagagacggtattgcaatggtatgtt |
155 |
Q |
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| T |
28663250 |
acattgttgctctttccgctagagacggaattgccatggtatgtt |
28663294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 28635630 - 28635703
Alignment:
| Q |
200 |
tcacatagtgaaacttataagtcaaatgattatccctcttaatagaataatttcttaagttgggacgtctaata |
273 |
Q |
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| T |
28635630 |
tcacatagtgagactaataagtcaaatgattatccaacttaatagaataattttttaaattgggacgcctaata |
28635703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 334
Target Start/End: Original strand, 28635752 - 28635791
Alignment:
| Q |
295 |
caaagaattaccatggaaatagtatgagtaattaatattt |
334 |
Q |
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| T |
28635752 |
caaagaattaccttagaaatagtatgagtaattaatattt |
28635791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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