View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12438_low_8 (Length: 270)
Name: NF12438_low_8
Description: NF12438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12438_low_8 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 255
Target Start/End: Original strand, 27521322 - 27521568
Alignment:
| Q |
9 |
aggagcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaa |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27521322 |
aggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaa |
27521421 |
T |
|
| Q |
109 |
tgcttcttggatgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttggaa |
208 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27521422 |
tgcttcttggatgatggttggtgggcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttggaa |
27521521 |
T |
|
| Q |
209 |
taatcatggattgtttctgtttgtgagggatcaacatggattcttgt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27521522 |
taatcatggattgtttctgtttgtgagggatcaacatggattcttgt |
27521568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 27462108 - 27461867
Alignment:
| Q |
14 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
113 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27462108 |
cagagacacagcggctaagagcatttccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
27462009 |
T |
|
| Q |
114 |
cttggatgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttggaataatc |
213 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27462008 |
cttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaagcattgatgatgttggaataatc |
27461909 |
T |
|
| Q |
214 |
atggattgtttctgtttgtgagggatcaacatggattcttgt |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27461908 |
atggattgtttctgtttgtgagggatcaacatggattcttgt |
27461867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 27482247 - 27482006
Alignment:
| Q |
14 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27482247 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
27482148 |
T |
|
| Q |
114 |
cttggatgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttggaataatc |
213 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
27482147 |
cttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaggcattgatgatgttggaataatc |
27482048 |
T |
|
| Q |
214 |
atggattgtttctgtttgtgagggatcaacatggattcttgt |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27482047 |
atggattgtttctgtttgtgagggatcaacatggattcttgt |
27482006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 18986208 - 18985967
Alignment:
| Q |
14 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
113 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18986208 |
cagagacacagcggctaagagtattcccacggagactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
18986109 |
T |
|
| Q |
114 |
cttggatgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttggaataatc |
213 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18986108 |
cttggatgacggttggtgagcagatgatgatgatggtgaacagagtttgacagtgttgttgtgagggtgatgatgaagcattgatgatgttggaataatc |
18986009 |
T |
|
| Q |
214 |
atggattgtttctgtttgtgagggatcaacatggattcttgt |
255 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
18986008 |
atggattgtttctgtttgtgagggatcaccatggattcttgt |
18985967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 1758256 - 1758015
Alignment:
| Q |
14 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758256 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
1758157 |
T |
|
| Q |
114 |
cttggatgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttggaataatc |
213 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1758156 |
cttgagtgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaataatc |
1758057 |
T |
|
| Q |
214 |
atggattgtttctgtttgtgagggatcaacatggattcttgt |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758056 |
atggattgtttctgtttgtgagggatcaacatggattcttgt |
1758015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 29568361 - 29568611
Alignment:
| Q |
14 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29568361 |
cagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgctt |
29568460 |
T |
|
| Q |
114 |
cttggatgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtg---------tgatgatgaagcattgatgatgtt |
204 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
29568461 |
cttggatgatagttggtgagcagaagatgatgatggtgaatggcgtttgaaagagtttttgtgagtgtgatgatgatgatgatgaagcattgatgatgtt |
29568560 |
T |
|
| Q |
205 |
ggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29568561 |
ggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgt |
29568611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 29168363 - 29168141
Alignment:
| Q |
14 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
29168363 |
cagagacacagcagctaagagcattcccacggagactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaatgctt |
29168264 |
T |
|
| Q |
114 |
cttggatgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatg---atgaagcattgatgatgttggaata |
210 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29168263 |
attggatgatagttggtgagcagaagatgatgatggtgaacgacgtttgacagagttgttgtgagtgtgatgatgatgaagcattgatgatgttggaata |
29168164 |
T |
|
| Q |
211 |
atcatggattgtttctgtttgtg |
233 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
29168163 |
atcatgctttgtttctgtttgtg |
29168141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 29425404 - 29425232
Alignment:
| Q |
14 |
cagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgctt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29425404 |
cagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaatgctt |
29425305 |
T |
|
| Q |
114 |
cttggatgatggttggtgagcagatgatgatgat---ggtgaacggcgtttgacagagttgttgtgagtgtga |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
29425304 |
cttggatgatggttggtgagcagatgatgatgatggtggtgaacggcgtttgacagagttgttgtgagtgtga |
29425232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 255
Target Start/End: Original strand, 29569708 - 29569919
Alignment:
| Q |
30 |
aagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttgg |
129 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
29569708 |
aagagcattgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttgg |
29569807 |
T |
|
| Q |
130 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttggaataatcatggattgtttctgtt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
29569808 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtg--------------tgatgatgttggaataatcatggattgtttgtgtt |
29569893 |
T |
|
| Q |
230 |
tgtgagggatcaacatggattcttgt |
255 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
29569894 |
tgtgagggatcaaaatggattcttgt |
29569919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 30 - 189
Target Start/End: Complemental strand, 27918742 - 27918583
Alignment:
| Q |
30 |
aagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttgg |
129 |
Q |
| |
|
|||||| || || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
27918742 |
aagagcgttgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttgg |
27918643 |
T |
|
| Q |
130 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatga |
189 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27918642 |
tgagcagaagatgatgatggtgaactgcgtttgacagagttgttgtgagtgtgatgatga |
27918583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 25518588 - 25518348
Alignment:
| Q |
18 |
gacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttg |
117 |
Q |
| |
|
|||||||| || ||||||||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25518588 |
gacacagcagcgaagagcattaccacgaagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaatgcttcttg |
25518489 |
T |
|
| Q |
118 |
gatgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatg---aagcattgatgatgttggaataatca |
214 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25518488 |
gatgatggttggtgaggagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaccaagcattgatgatgttggaataatca |
25518389 |
T |
|
| Q |
215 |
tggattgtttctgtttgtgagggatcaacatggattcttgt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25518388 |
tggattgtttctgtttgtgagggatcaacatggattcttgt |
25518348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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