View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12439_high_3 (Length: 367)

Name: NF12439_high_3
Description: NF12439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12439_high_3
NF12439_high_3
[»] chr2 (3 HSPs)
chr2 (11-357)||(33276080-33276426)
chr2 (151-269)||(20004179-20004297)
chr2 (169-217)||(36804362-36804410)
[»] chr7 (7 HSPs)
chr7 (68-351)||(23811122-23811405)
chr7 (158-308)||(29916331-29916481)
chr7 (113-351)||(20918142-20918377)
chr7 (169-216)||(5327005-5327052)
chr7 (171-260)||(17055766-17055855)
chr7 (154-186)||(6520186-6520218)
chr7 (169-217)||(41339760-41339808)
[»] chr8 (1 HSPs)
chr8 (151-254)||(4331443-4331546)
[»] chr3 (4 HSPs)
chr3 (124-203)||(17762955-17763034)
chr3 (124-203)||(19064275-19064354)
chr3 (171-260)||(44888141-44888230)
chr3 (151-258)||(14854119-14854226)
[»] chr6 (4 HSPs)
chr6 (151-269)||(28576255-28576372)
chr6 (165-269)||(333408-333512)
chr6 (150-280)||(2987652-2987784)
chr6 (165-217)||(333532-333584)
[»] chr1 (1 HSPs)
chr1 (151-271)||(6458233-6458351)
[»] chr5 (2 HSPs)
chr5 (176-271)||(14852332-14852427)
chr5 (121-239)||(19837829-19837947)


Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 357
Target Start/End: Complemental strand, 33276426 - 33276080
Alignment:
Q  11 gaacctgtgtgtgacaaatgatatatgaggtagctgcaacattataagactcttgactagtgagaaatttatacacacccttaatcgagtagccaccgca 110  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33276426 gaacctgtctgtgacaaatgatatatgaggtagctgcaacattataagactcttgactagtgagaaatttatacacacccttaatcgagtagccaccgca 33276327  T
Q  111 atgatcatacctccactaccactgatccataaaattagattgcaaagaaatatcatgaagtaaagtcctacactcctttaacaattcctcctcgcatgcc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33276326 atgatcatacctccactaccactgatccataaaattagattgcaaagaaatatcatgaagtaaagtcctacactcctttaacaattcctcctcccatgcc 33276227  T
Q  211 tacaaccgacgatgccactgccaagccacacctccttcctcccaccctaaaccacacatatatgctatcgtactcaacttattccctggcaagtcgaaca 310  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33276226 tacaaccgacgacgccactgccaagccgcacctccttcctcccaccctaaaccacacatatatgctatcgtactcaacttattccctggcaagtcgaaca 33276127  T
Q  311 tgcggctaaacttcacataaaaaggaactcctcctaaccacaggttc 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33276126 tgcggctaaacttcacataaaaaggaactcctcctaaccacaggttc 33276080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 151 - 269
Target Start/End: Original strand, 20004179 - 20004297
Alignment:
Q  151 tgcaaagaaatatcatgaagtaaagtcctacactcctttaacaattcctcctcgcatgcctacaaccgacgatgccactgccaagccacacctccttcct 250  Q
    |||||||||||||| ||||||||| || | |||||| ||||||| || ||  | |||||| | |||||||||||||||||||||||  | || |||||||    
T  20004179 tgcaaagaaatatcttgaagtaaaatcttgcactcccttaacaaatcatctacccatgcccataaccgacgatgccactgccaagctgccccgccttcct 20004278  T
Q  251 cccaccctaaaccacacat 269  Q
    |||| |||||| |||||||    
T  20004279 cccaacctaaatcacacat 20004297  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 36804362 - 36804410
Alignment:
Q  169 agtaaagtcctacactcctttaacaattcctcctcgcatgcctacaacc 217  Q
    ||||||| ||||||||||| |||||| |||||||| || ||||||||||    
T  36804362 agtaaagccctacactcctctaacaagtcctcctcccacgcctacaacc 36804410  T

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Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 68 - 351
Target Start/End: Original strand, 23811122 - 23811405
Alignment:
Q  68 tagtgagaaatttatacacacccttaatcgagtagccaccgcaatgatcatacctccactaccactgatccataaaattagattgcaaagaaatatcatg 167  Q
    |||||||  ||||||| |||||||||| |||    |||||||||||||| |||||||| || ||| |||  ||||||||||| || ||||||||||||||    
T  23811122 tagtgagcgatttataaacacccttaaccgaa---ccaccgcaatgatcgtacctccagtatcacggatatataaaattagactgtaaagaaatatcatg 23811218  T
Q  168 ----aagtaaagtcctacactcctttaacaattcctcctcgcatgcctacaaccgacgatgccactgccaagccacacctccttcctcccaccctaaacc 263  Q
        ||||||| |||||||||||  || |||||||||||| ||| |    ||||||||  ||||||| |||| |   |||||||||||||||||||||||    
T  23811219 catgaagtaaactcctacactcccctagcaattcctcctcccatactcgtaaccgacggcgccactgtcaagacgaccctccttcctcccaccctaaacc 23811318  T
Q  264 acacatatatgctatcgtactcaacttattccctggcaagtcgaacatgcggctaaacttcacataaaaaggaactcctcctaaccac 351  Q
    ||||||||  |||| |||||||||||||||| | | ||||||||| |||||||||||||||| |  ||||||||||||||||||||||    
T  23811319 acacatatccgctaccgtactcaacttattctcagacaagtcgaatatgcggctaaacttcata-gaaaaggaactcctcctaaccac 23811405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 158 - 308
Target Start/End: Original strand, 29916331 - 29916481
Alignment:
Q  158 aaatatcatgaagtaaagtcctacactcctttaacaattcctcctcgcatgcctacaaccgacgatgccactgccaagccacacctccttcctcccaccc 257  Q
    |||| ||||||| |||| || |||||||| ||||||| || ||||| || ||| |||||||||| ||||||| ||||||||| ||| |||||||||||||    
T  29916331 aaatgtcatgaattaaaatcatacactcccttaacaactcatcctcccacgcccacaaccgacgttgccactaccaagccaccccttcttcctcccaccc 29916430  T
Q  258 taaaccacacatatatgctatcgtactcaacttattccctggcaagtcgaa 308  Q
    |||| ||||||||  |||   ||||||| |||||||| | | |||||||||    
T  29916431 taaagcacacataattgcctccgtactcgacttattctcggccaagtcgaa 29916481  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 351
Target Start/End: Original strand, 20918142 - 20918377
Alignment:
Q  113 gatcatacctccactaccactgatccataaaattagattgcaaagaaatatcatgaagtaaagtcctacactcctttaacaattcctcctcgcatgccta 212  Q
    ||||||| ||||||| ||| |||||| || |||||||  | || |||||| | ||||||||| || |||||||  |||||||| ||||||| ||||||||    
T  20918142 gatcataactccactgccattgatccgtagaattagaccgtaacgaaataacgtgaagtaaactcatacactcacttaacaatccctcctcccatgccta 20918241  T
Q  213 caaccgacgatgccactgccaagccacacctccttcctcccaccctaaaccacacatatatgctatcgtactcaacttattccctggcaagtcgaacatg 312  Q
        ||| |  || |||||||| |||  |||||||||| | |||| ||||||||||||| ||| |  || |||||||||||    | ||||||||||| |    
T  20918242 t---cgaaggcgcaactgccaacccagccctccttccttcgaccccaaaccacacatatctgcaactgtgctcaacttattataagtcaagtcgaacagg 20918338  T
Q  313 cggctaaacttcacataaaaaggaactcctcctaaccac 351  Q
    || |||||||||||  |||  |||||||| |||||||||    
T  20918339 cgcctaaacttcactcaaagtggaactccacctaaccac 20918377  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 5327005 - 5327052
Alignment:
Q  169 agtaaagtcctacactcctttaacaattcctcctcgcatgcctacaac 216  Q
    ||||||||||||||||||||||| ||||||||||| || ||| |||||    
T  5327005 agtaaagtcctacactcctttaataattcctcctcccacgcccacaac 5327052  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 17055766 - 17055855
Alignment:
Q  171 taaagtcctacactcctttaacaattcctcctcgcatgcctacaaccgacgatgccactgccaagccacacctccttcctcccaccctaa 260  Q
    |||| |||||||||||  |||||| |||||||| |||||| ||||||| | | |||||||||| ||| | || ||||| ||||| |||||    
T  17055766 taaaatcctacactcccctaacaactcctcctctcatgcccacaaccgcctacgccactgccacgcctcccccccttcgtcccaacctaa 17055855  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 6520218 - 6520186
Alignment:
Q  154 aaagaaatatcatgaagtaaagtcctacactcc 186  Q
    |||||||||||||||||||| ||||||||||||    
T  6520218 aaagaaatatcatgaagtaatgtcctacactcc 6520186  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 41339760 - 41339808
Alignment:
Q  169 agtaaagtcctacactcctttaacaattcctcctcgcatgcctacaacc 217  Q
    ||||||||||||||||||| ||| ||||||||||| || ||| ||||||    
T  41339760 agtaaagtcctacactcctctaataattcctcctcccacgcccacaacc 41339808  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 4331443 - 4331546
Alignment:
Q  151 tgcaaagaaatatcatgaagtaaagtcctacactcctttaacaattcctcctcgcatgcctacaaccgacgatgccactgccaagccacacctccttcct 250  Q
    ||||||| |||||||| |||||||||| | ||||||  |||||  |||||||| || ||| ||||||| |    ||||||||||||||| ||||||||||    
T  4331443 tgcaaagtaatatcataaagtaaagtcattcactcccctaacatctcctcctctcacgcccacaaccgccaccaccactgccaagccacccctccttcct 4331542  T
Q  251 ccca 254  Q
    ||||    
T  4331543 ccca 4331546  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 17763034 - 17762955
Alignment:
Q  124 cactaccactgatccataaaattagattgcaaagaaatatcatgaagtaaagtcctacactcctttaacaattcctcctc 203  Q
    |||||||||| |||  || ||||| || ||||||||||||| ||||||||| | ||||||||| ||||||| ||||||||    
T  17763034 cactaccacttatctgtagaattatatcgcaaagaaatatcgtgaagtaaaattctacactccattaacaaatcctcctc 17762955  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 19064354 - 19064275
Alignment:
Q  124 cactaccactgatccataaaattagattgcaaagaaatatcatgaagtaaagtcctacactcctttaacaattcctcctc 203  Q
    |||||||||| |||  || ||||| || ||||||||||||| ||||||||| | ||||||||| ||||||| ||||||||    
T  19064354 cactaccacttatctgtagaattatatcgcaaagaaatatcgtgaagtaaaattctacactccattaacaaatcctcctc 19064275  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 44888141 - 44888230
Alignment:
Q  171 taaagtcctacactcctttaacaattcctcctcgcatgcctacaaccgacgatgccactgccaagccacacctccttcctcccaccctaa 260  Q
    |||| |||||||||||  ||||||||||||||| |||||| ||||||| | | |||||||||| ||| | || ||||| ||||| |||||    
T  44888141 taaaatcctacactcccctaacaattcctcctcccatgcccacaaccgcctacgccactgccacgcctcccccccttcgtcccaacctaa 44888230  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 14854119 - 14854226
Alignment:
Q  151 tgcaaagaaatatcatgaagtaaagtcctacactcctttaacaattcctcctcgcatgcctacaaccgacgatgccactgccaagccacacctccttcct 250  Q
    |||||||||| || | |||||||  | |||||||||| ||| |  |||||||| ||  || ||||||| | | |||||||||||||| |||||||||||     
T  14854119 tgcaaagaaacattaagaagtaacattctacactcctctaaaagatcctcctcccacacccacaaccgcctacgccactgccaagcctcacctccttccc 14854218  T
Q  251 cccaccct 258  Q
    ||||||||    
T  14854219 cccaccct 14854226  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 269
Target Start/End: Complemental strand, 28576372 - 28576255
Alignment:
Q  151 tgcaaagaaatatcatgaagtaaagtcctacactcctttaacaattcctcctcgcatgcctacaaccgacgatgccactgccaagccacacctccttcct 250  Q
    ||||||| || || ||||| ||||||||||||||||  |||||| |||||||| || ||| ||| ||||||   ||||||||||| ||  |||||  |||    
T  28576372 tgcaaagtaacattatgaattaaagtcctacactcccctaacaactcctcctctcacgcccacacccgacgccaccactgccaag-catccctccaacct 28576274  T
Q  251 cccaccctaaaccacacat 269  Q
    |||| ||||||||||||||    
T  28576273 cccaacctaaaccacacat 28576255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 269
Target Start/End: Complemental strand, 333512 - 333408
Alignment:
Q  165 atgaagtaaagtcctacactcctttaacaattcctcctcgcatgcctacaaccgacgatgccactgccaagccacacctccttcctcccaccctaaacca 264  Q
    |||| ||||| |||||||||||  |||||| ||||| || |||| | |||| ||||| | ||||||||||||  | |||||||||||||| ||||  |||    
T  333512 atgatgtaaaatcctacactcccctaacaactcctcatcacatgaccacaatcgacgctaccactgccaagcagcccctccttcctcccaacctaggcca 333413  T
Q  265 cacat 269  Q
    |||||    
T  333412 cacat 333408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 280
Target Start/End: Complemental strand, 2987784 - 2987652
Alignment:
Q  150 ttgcaaagaaatatcatgaagtaaagtcctac---actcctttaacaattcctcctcgcatgcctacaaccgacgatgccactgccaagccacacctcct 246  Q
    ||||||||||||||| ||||||||| ||||||   |||||  ||||||||||||||   ||||| | ||||||||  |||| ||||| ||  | || |||    
T  2987784 ttgcaaagaaatatcgtgaagtaaaatcctacaatactcccctaacaattcctccttcaatgcccataaccgacggcgcca-tgccatgctgccccgcct 2987686  T
Q  247 tcctcccaccctaaaccacacatatatgctatcg 280  Q
    |||||||| |||||| | ||||||||||| ||||    
T  2987685 tcctcccaacctaaagcgcacatatatgccatcg 2987652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 333584 - 333532
Alignment:
Q  165 atgaagtaaagtcctacactcctttaacaattcctcctcgcatgcctacaacc 217  Q
    |||| |||||||||||||||||| |||||| ||||| || |||||| ||||||    
T  333584 atgatgtaaagtcctacactcctctaacaactcctcatcccatgcccacaacc 333532  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 271
Target Start/End: Complemental strand, 6458351 - 6458233
Alignment:
Q  151 tgcaaagaaatatcatgaagtaaagtcctacactcctttaacaattcctcctcgcatgcctacaaccgacgatgccactgccaagccacacctccttcct 250  Q
    ||||| |||||||| ||||||||| |||||||| |||  ||||  |||| ||| || | | ||||||||||| |||| ||||| ||||  ||||||| ||    
T  6458351 tgcaaggaaatatcgtgaagtaaaatcctacacccct--aacagctccttctcccaagtccacaaccgacgacgccattgccaggccatccctcctttct 6458254  T
Q  251 cccaccctaaaccacacatat 271  Q
    ||||||| ||| |||||||||    
T  6458253 cccaccccaaatcacacatat 6458233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 14852427 - 14852332
Alignment:
Q  176 tcctacactcctttaacaattcctcctcgcatgcctacaaccgacgatgccactgccaagccacacctccttcctcccaccctaaaccacacatat 271  Q
    |||||||||||  ||||| ||||||||| |   || ||||||| ||  |||||||||||||| | || || ||||||||||||||||| |||||||    
T  14852427 tcctacactcccctaacagttcctcctccccaacccacaaccggcggcgccactgccaagccgccccaccatcctcccaccctaaaccgcacatat 14852332  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 19837829 - 19837947
Alignment:
Q  121 ctccactaccactgatccataaaattagattgcaaagaaatatcatgaagtaaagtcctacactcctttaacaattcctcctcgcatgcctacaaccgac 220  Q
    ||||||| ||||| |||  || ||||| ||||||||||||||||||| | |||| |||||||| ||  |||||  ||||||||  ||||| |||  ||||    
T  19837829 ctccactgccactcatctctagaattaaattgcaaagaaatatcatgtaataaaatcctacacaccactaacagatcctcctcctatgcccacattcgac 19837928  T
Q  221 gatgccactgccaagccac 239  Q
    || ||||||| ||| ||||    
T  19837929 gacgccactggcaatccac 19837947  T

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