View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12439_high_7 (Length: 229)

Name: NF12439_high_7
Description: NF12439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12439_high_7
NF12439_high_7
[»] chr3 (5 HSPs)
chr3 (22-210)||(5498977-5499165)
chr3 (150-218)||(2550670-2550738)
chr3 (150-218)||(7407280-7407348)
chr3 (150-218)||(13846496-13846564)
chr3 (150-204)||(1655081-1655135)
[»] chr2 (2 HSPs)
chr2 (15-80)||(27149572-27149637)
chr2 (150-218)||(31342258-31342326)
[»] chr7 (2 HSPs)
chr7 (150-204)||(19747730-19747784)
chr7 (150-204)||(4684943-4684997)
[»] scaffold0576 (1 HSPs)
scaffold0576 (150-218)||(7205-7273)
[»] chr8 (3 HSPs)
chr8 (150-218)||(25639313-25639381)
chr8 (150-218)||(45355640-45355708)
chr8 (150-204)||(28248620-28248674)
[»] chr6 (2 HSPs)
chr6 (150-218)||(15362221-15362289)
chr6 (150-218)||(16735310-16735378)
[»] chr4 (1 HSPs)
chr4 (150-218)||(43600771-43600839)
[»] chr5 (1 HSPs)
chr5 (150-204)||(7411818-7411872)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 5498977 - 5499165
Alignment:
Q  22 tgaaaatatgcaagattaaaacttaaaggaatctaacgaaacaatcatttatgcataccattcttagnnnnnnngagtaaatatatacaaccaccatacc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||       |||||||||||||||| |||||||||    
T  5498977 tgaaaatatgcaagattaaaacttaaaggaatctaacgaaacaatcatttaagcataccattcttagaaaaaaagagtaaatatatacaatcaccatacc 5499076  T
Q  122 tttctgatcttcaaaaggtagaaatcaataaggtcatctagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcg 210  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5499077 tttctgatcttcaaaaggtagaaatcaataatgtcatcaagcagcacaatagaaatgcaatccttttctttaatctcctttgtattgcg 5499165  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 2550670 - 2550738
Alignment:
Q  150 taaggtcatctagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgct 218  Q
    |||||||||| ||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| |||||    
T  2550670 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgct 2550738  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 7407348 - 7407280
Alignment:
Q  150 taaggtcatctagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgct 218  Q
    |||||||||| ||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| |||||    
T  7407348 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgct 7407280  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 13846496 - 13846564
Alignment:
Q  150 taaggtcatctagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgct 218  Q
    |||||||||| ||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| |||||    
T  13846496 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgct 13846564  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 1655081 - 1655135
Alignment:
Q  150 taaggtcatctagcagcacagtagaaatgcaatccttttctttaatctcctttgt 204  Q
    |||||||||| ||| |||||  |||||||||| |||| |||||||||||||||||    
T  1655081 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgt 1655135  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 27149637 - 27149572
Alignment:
Q  15 gcaatgatgaaaatatgcaagattaaaacttaaaggaatctaacgaaacaatcatttatgcatacc 80  Q
    |||||||||||||||||| ||| ||||||||||||||||||||  ||||||||||||||| |||||    
T  27149637 gcaatgatgaaaatatgctagactaaaacttaaaggaatctaataaaacaatcatttatgtatacc 27149572  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 31342326 - 31342258
Alignment:
Q  150 taaggtcatctagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgct 218  Q
    |||||||||| ||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| |||||    
T  31342326 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgct 31342258  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 19747730 - 19747784
Alignment:
Q  150 taaggtcatctagcagcacagtagaaatgcaatccttttctttaatctcctttgt 204  Q
    |||||||||| ||| ||||| |||||||||||||||| |||||||||||||||||    
T  19747730 taaggtcatcaagctgcacattagaaatgcaatccttctctttaatctcctttgt 19747784  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 4684997 - 4684943
Alignment:
Q  150 taaggtcatctagcagcacagtagaaatgcaatccttttctttaatctcctttgt 204  Q
    |||||||||| ||| |||||  |||||||||| |||| |||||||||||||||||    
T  4684997 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgt 4684943  T

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Target: scaffold0576 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 7205 - 7273
Alignment:
Q  150 taaggtcatctagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgct 218  Q
    |||||||||| ||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| |||||    
T  7205 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgct 7273  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 25639313 - 25639381
Alignment:
Q  150 taaggtcatctagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgct 218  Q
    |||||||||| ||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| |||||    
T  25639313 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgct 25639381  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 45355708 - 45355640
Alignment:
Q  150 taaggtcatctagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgct 218  Q
    |||||||||| ||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| |||||    
T  45355708 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgct 45355640  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 28248674 - 28248620
Alignment:
Q  150 taaggtcatctagcagcacagtagaaatgcaatccttttctttaatctcctttgt 204  Q
    |||||||||| ||| |||||  |||||||||| |||| |||||||||||||||||    
T  28248674 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgt 28248620  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 15362221 - 15362289
Alignment:
Q  150 taaggtcatctagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgct 218  Q
    |||||||||| ||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| |||||    
T  15362221 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgct 15362289  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 16735310 - 16735378
Alignment:
Q  150 taaggtcatctagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgct 218  Q
    |||||||||| ||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| |||||    
T  16735310 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgct 16735378  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 43600771 - 43600839
Alignment:
Q  150 taaggtcatctagcagcacagtagaaatgcaatccttttctttaatctcctttgtattgcgcctttgct 218  Q
    |||||||||| ||| |||||  |||||||||| |||| ||||||||||||||||| ||| ||| |||||    
T  43600771 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgtcttgtgccgttgct 43600839  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 7411818 - 7411872
Alignment:
Q  150 taaggtcatctagcagcacagtagaaatgcaatccttttctttaatctcctttgt 204  Q
    |||||||||| ||| |||||  |||||||||| |||| |||||||||||||||||    
T  7411818 taaggtcatcaagctgcacatgagaaatgcaagccttctctttaatctcctttgt 7411872  T

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