View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12439_low_2 (Length: 391)
Name: NF12439_low_2
Description: NF12439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12439_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 26449639 - 26449260
Alignment:
| Q |
1 |
tccctcagaatttacatcatcttctgcaatctaatgtggatacctacatcaaagattcaaattggaatgttcctcaagcttctttgcctgcatatcctgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| |
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| T |
26449639 |
tccctcagaatttacatcatcttctgcaatctaatgtggatacctacatcaaagattcaaattggaatgttcctcaagcttttttggttgcatattctgc |
26449540 |
T |
|
| Q |
101 |
tttgcagcagaaactattgttgactactatacctattttccctaaagaagataaactaatatagaaagcctctcatgatggaaatctagcttttaaagac |
200 |
Q |
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|||| |||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
26449539 |
tttggagcaaaaactattgatgactactatacctattgtccctaaagaagataaactaatatggaaagcctctcatgatggaaatttagcttttaaagac |
26449440 |
T |
|
| Q |
201 |
gcatatctcttcctgacttccaatcagcctcagaacatcagttgggccaaagtcatttggcacattgctatccctccttctaagtccgtgcttgtttgga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26449439 |
gcatatctcttcctgacttccaatcagcctcagaacatcagttgggccaaagtcatttggcacattgctatccctccttctaagtccttgcttgtttgga |
26449340 |
T |
|
| Q |
301 |
gactgttgcataacaagcttcctacagatgataacctctctcttagaggctttcatactacatccatttgcaatctctgt |
380 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26449339 |
gactgttgcataacaagcttcctacagatgataacctctctcttagaggctgtcatactacatccatttgcaatctctgt |
26449260 |
T |
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