View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12439_low_9 (Length: 227)

Name: NF12439_low_9
Description: NF12439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12439_low_9
NF12439_low_9
[»] chr3 (18 HSPs)
chr3 (14-215)||(15752475-15752677)
chr3 (32-215)||(15758268-15758452)
chr3 (14-206)||(21883405-21883598)
chr3 (30-215)||(21458331-21458514)
chr3 (31-215)||(21453158-21453340)
chr3 (33-215)||(21473104-21473287)
chr3 (14-215)||(21477473-21477674)
chr3 (14-208)||(49486707-49486902)
chr3 (13-202)||(2978225-2978414)
chr3 (33-204)||(21877164-21877336)
chr3 (33-208)||(49491204-49491380)
chr3 (33-191)||(2982181-2982338)
chr3 (11-85)||(9724730-9724805)
chr3 (10-102)||(3110599-3110692)
chr3 (11-102)||(13990809-13990901)
chr3 (11-102)||(23344353-23344445)
chr3 (11-102)||(40800728-40800820)
chr3 (14-102)||(2168741-2168830)
[»] chr4 (29 HSPs)
chr4 (14-211)||(12659171-12659369)
chr4 (14-215)||(16325694-16325896)
chr4 (33-215)||(16334738-16334921)
chr4 (14-215)||(30673677-30673877)
chr4 (33-215)||(30679770-30679951)
chr4 (13-215)||(910827-911025)
chr4 (14-215)||(1873970-1874170)
chr4 (33-215)||(1913709-1913892)
chr4 (18-215)||(25687536-25687732)
chr4 (32-215)||(23187962-23188144)
chr4 (14-215)||(23200507-23200707)
chr4 (13-182)||(12435360-12435525)
chr4 (31-215)||(18890000-18890184)
chr4 (35-215)||(25697304-25697483)
chr4 (13-182)||(42411087-42411252)
chr4 (37-211)||(12665689-12665859)
chr4 (13-182)||(29333617-29333782)
chr4 (14-215)||(12428861-12429061)
chr4 (33-182)||(42404643-42404788)
chr4 (35-215)||(12439270-12439449)
chr4 (33-182)||(917302-917447)
chr4 (33-215)||(33360159-33360341)
chr4 (13-154)||(4393790-4393932)
chr4 (33-215)||(48305320-48305499)
chr4 (33-215)||(55325479-55325663)
chr4 (21-131)||(42119796-42119907)
chr4 (11-58)||(6162225-6162272)
chr4 (12-102)||(53982073-53982164)
chr4 (14-102)||(20192682-20192771)
[»] chr2 (20 HSPs)
chr2 (18-215)||(43287369-43287567)
chr2 (14-214)||(24053266-24053466)
chr2 (14-215)||(19437515-19437715)
chr2 (33-215)||(43293114-43293297)
chr2 (31-214)||(24056601-24056784)
chr2 (14-215)||(25445037-25445236)
chr2 (33-215)||(19443090-19443271)
chr2 (33-215)||(25454699-25454876)
chr2 (33-154)||(31437151-31437273)
chr2 (33-154)||(31433045-31433167)
chr2 (11-102)||(22430325-22430417)
chr2 (11-102)||(22435919-22436011)
chr2 (11-102)||(43776968-43777060)
chr2 (11-87)||(1525619-1525696)
chr2 (81-154)||(8872289-8872362)
chr2 (11-55)||(636259-636303)
chr2 (11-55)||(7910101-7910145)
chr2 (11-46)||(14898760-14898795)
chr2 (13-46)||(5836224-5836257)
chr2 (72-132)||(5836153-5836213)
[»] chr1 (21 HSPs)
chr1 (14-215)||(37356709-37356911)
chr1 (30-215)||(37365127-37365313)
chr1 (33-215)||(35625228-35625411)
chr1 (14-215)||(18534957-18535157)
chr1 (14-215)||(31092925-31093125)
chr1 (14-215)||(11660158-11660358)
chr1 (33-215)||(27347143-27347326)
chr1 (33-215)||(18540683-18540864)
chr1 (33-216)||(38736039-38736223)
chr1 (33-215)||(11654020-11654201)
chr1 (33-215)||(31099531-31099712)
chr1 (13-182)||(38991079-38991244)
chr1 (13-163)||(28519255-28519405)
chr1 (33-215)||(7876091-7876271)
chr1 (33-182)||(38984912-38985057)
chr1 (31-182)||(28512810-28512955)
chr1 (33-215)||(39492740-39492921)
chr1 (11-102)||(15716601-15716693)
chr1 (11-55)||(27179108-27179152)
chr1 (12-103)||(33493026-33493118)
chr1 (13-46)||(29547720-29547753)
[»] scaffold0014 (2 HSPs)
scaffold0014 (14-215)||(111856-112058)
scaffold0014 (170-215)||(106130-106175)
[»] chr5 (12 HSPs)
chr5 (14-215)||(23053357-23053557)
chr5 (13-206)||(25365378-25365573)
chr5 (14-215)||(35264518-35264718)
chr5 (33-215)||(23058932-23059113)
chr5 (14-184)||(21171196-21171365)
chr5 (33-215)||(35270259-35270440)
chr5 (33-215)||(39653905-39654086)
chr5 (14-184)||(16675545-16675711)
chr5 (31-215)||(21178025-21178211)
chr5 (11-102)||(28367071-28367163)
chr5 (11-85)||(30957704-30957779)
chr5 (99-151)||(2135850-2135902)
[»] chr7 (16 HSPs)
chr7 (14-215)||(340269-340471)
chr7 (13-215)||(29185506-29185704)
chr7 (33-215)||(29176544-29176725)
chr7 (33-197)||(346521-346686)
chr7 (14-215)||(8248091-8248292)
chr7 (31-182)||(22822535-22822684)
chr7 (33-182)||(22826840-22826987)
chr7 (33-215)||(8242541-8242723)
chr7 (13-205)||(25830376-25830566)
chr7 (33-117)||(2068797-2068882)
chr7 (13-100)||(25499033-25499121)
chr7 (11-55)||(32148454-32148498)
chr7 (15-85)||(42208874-42208945)
chr7 (13-55)||(558010-558052)
chr7 (14-102)||(16648403-16648492)
chr7 (14-102)||(17622764-17622853)
[»] scaffold0079 (1 HSPs)
scaffold0079 (33-215)||(57939-58122)
[»] chr8 (13 HSPs)
chr8 (14-215)||(30714193-30714393)
chr8 (14-215)||(30721970-30722170)
chr8 (33-215)||(30727578-30727759)
chr8 (13-182)||(37209692-37209859)
chr8 (13-182)||(21247656-21247821)
chr8 (13-154)||(27679662-27679803)
chr8 (31-182)||(37204233-37204382)
chr8 (33-182)||(21241172-21241317)
chr8 (33-154)||(27683444-27683565)
chr8 (14-138)||(26196877-26197002)
chr8 (58-215)||(24042835-24042987)
chr8 (33-125)||(26196996-26197089)
chr8 (11-55)||(12756300-12756344)
[»] scaffold0102 (1 HSPs)
scaffold0102 (14-212)||(14006-14203)
[»] scaffold0591 (1 HSPs)
scaffold0591 (33-206)||(9323-9496)
[»] chr6 (6 HSPs)
chr6 (33-210)||(18738573-18738749)
chr6 (13-182)||(23427462-23427627)
chr6 (33-206)||(33660877-33661052)
chr6 (33-182)||(23421636-23421781)
chr6 (11-85)||(14855914-14855989)
chr6 (14-46)||(19441313-19441345)
[»] scaffold0258 (1 HSPs)
scaffold0258 (35-215)||(6256-6435)
[»] scaffold0004 (1 HSPs)
scaffold0004 (11-102)||(345761-345853)


Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 15752677 - 15752475
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15752677 atggacatccaagggggaatgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcata 15752578  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||  ||||||| ||||||||||||||    
T  15752577 agctactctattttcttataaatagagctcatttgtaacattgagatacacacattagtgaataagaatactgctctaattctctcttcttctccttctc 15752478  T
Q  213 tct 215  Q
    |||    
T  15752477 tct 15752475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 32 - 215
Target Start/End: Complemental strand, 15758452 - 15758268
Alignment:
Q  32 gtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttctta 130  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15758452 gtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttctta 15758353  T
Q  131 taaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||||    
T  15758352 taaatagagctcatttgtaacattgagatacacacattagtgaataagaatactgctctaattctctcttcttctccttctctct 15758268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 21883405 - 21883598
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    ||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  21883405 atggacatccaagggggagtgttataaatattaatagcggatgtccaaatagcaaatgtgttattgagccatactactaggttattgggcttagttcata 21883504  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||| ||||| | |||||||||||| ||||||||    
T  21883505 agctactctattttcttataaatagagctcatttgtaacattgggatacacacatcagtgaataggaatatttctcctattctctcttcttctc 21883598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 30 - 215
Target Start/End: Original strand, 21458331 - 21458514
Alignment:
Q  30 gagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttct 128  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21458331 gagtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttct 21458430  T
Q  129 tataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    ||||||||||||||||||||||||||  ||||||||||| |||||||||||||||| |||||||||||   ||||||||||||||||    
T  21458431 tataaatagagctcatttgtaacattgggatacacacatcagtgaataagaatactgctcctattctc---tcttctccttctctct 21458514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 31 - 215
Target Start/End: Original strand, 21453158 - 21453340
Alignment:
Q  31 agtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttctt 129  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21453158 agtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttctt 21453257  T
Q  130 ataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    |||||||||||||||||||||||||  ||||||||||| |||||||||||||||| |||||||||||   ||||||||||||||||    
T  21453258 ataaatagagctcatttgtaacattgggatacacacatcagtgaataagaatactgctcctattctc---tcttctccttctctct 21453340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 21473104 - 21473287
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||||||||||    
T  21473104 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactattagcttattggacttagttcataagctactctattttcttat 21473203  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||    
T  21473204 aaatagagctcatttgtaacattgagatacacacatcagtgaataagaatactgctcctattctctcttcttctccttctctct 21473287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 21477473 - 21477674
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  21477473 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaa-tgtgttattgggccatactactaggttattgggcttagttcata 21477571  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    ||||||| |||||| |||||||||| |||||||||||||||| ||||||||||||  || |||||||||||| |||||||||||| ||||||| ||||||    
T  21477572 agctactttatttttttataaatagggctcatttgtaacattgagatacacacatcggtaaataagaatactgctcctattctctcttcttcttcttctc 21477671  T
Q  213 tct 215  Q
    |||    
T  21477672 tct 21477674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 49486902 - 49486707
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||| |||||||||| ||||| ||||||    
T  49486902 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgagcttaattcata 49486803  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctcct 208  Q
     ||||||||||||   |||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||||||||    
T  49486802 ggctactctatttctctataaatagagctcatttgtaacattgagatacacacatcagtgaataagaatactgctcctattctctcttcttctcct 49486707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 2978414 - 2978225
Alignment:
Q  13 gatggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||| |||||||||||||||||||||||||||||||    
T  2978414 gatggacatccaagggggagtgttataaatattaatagtggatgtccaaataacaaatgtgttagtgggccatactactaggttattgggcttagttcat 2978315  T
Q  112 aagctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcc-tattctctattct 202  Q
    |||||||||||||||| ||||||||||||||||||||||||||  |||| |||||| |||||||||||||| | |||| |||||||| ||||    
T  2978314 aagctactctattttcctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatatttctccttattctctcttct 2978225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 33 - 204
Target Start/End: Original strand, 21877164 - 21877336
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21877164 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 21877263  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttc 204  Q
    |||| ||||||||||||||||||  ||||||||||| |||||||| ||||| | |||||||||||| ||||||    
T  21877264 aaatggagctcatttgtaacattgggatacacacatcagtgaataggaatatttctcctattctctcttcttc 21877336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 33 - 208
Target Start/End: Complemental strand, 49491380 - 49491204
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||| |||||||||| ||||| |||||| ||||||||||||   |||    
T  49491380 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgagcttaattcataggctactctatttctctat 49491281  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctcct 208  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| |||||||| ||||||||||    
T  49491280 aaatagagctcatttgtaacattgagatacacacatcagtgaataagaatactgctcatattctctcttcttctcct 49491204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 2982338 - 2982181
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||| | |||    
T  2982338 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggctatactactaggttattgggcttagttcataagctactctatttccctat 2982239  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactccta 191  Q
    |||||||||||||||||||||||  |||| |||||| |||||||||||||| | ||||||    
T  2982238 aaatagagctcatttgtaacatt--gatatacacataagtgaataagaatatttctccta 2982181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 9724805 - 9724730
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccata 85  Q
    |||||||||||||||||||||||||||| ||||||| |||||||| | || ||||||| || ||||||||| ||||    
T  9724805 gagatggacatccaagggggagtgttatgaatattactagtggatgtccatatagcaattgggttattggatcata 9724730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 3110692 - 3110599
Alignment:
Q  10 tgagatggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggc 102  Q
    ||||||||||||||||||||||||||||| |||||||  ||||||| | || ||||||| || ||||||||| |||| |  ||| |||||||||    
T  3110692 tgagatggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 3110599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 13990809 - 13990901
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggc 102  Q
    |||||||||||||||||||||||||||| |||||||  ||||||| | || ||||||| || ||||||||| |||| |  ||| |||||||||    
T  13990809 gagatggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 13990901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 23344353 - 23344445
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggc 102  Q
    |||||||||||||||||||||||||||| |||||||  ||||||| | || ||||||| || ||||||||| |||| |  ||| |||||||||    
T  23344353 gagatggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 23344445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 40800820 - 40800728
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggc 102  Q
    |||||||||||||||||||||||||||| |||||||  ||||||| | || ||||||| || ||||||||| |||| |  ||| |||||||||    
T  40800820 gagatggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 40800728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 2168830 - 2168741
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggc 102  Q
    ||||||||||||||||||||||||| |||||||  ||||||| | || ||||||| || ||||||||| |||| |  ||| |||||||||    
T  2168830 atggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 2168741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 12659369 - 12659171
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12659369 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcata 12659270  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttct 211  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||| |||||||| |||||||| ||||    
T  12659269 agctactctattttcttataaatagagctcatttgtaacactgagatacacacattagtgaataagaatactgctcatattctctcttcttctcattct 12659171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 16325896 - 16325694
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16325896 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcata 16325797  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |  ||||||||||| ||||||||||||||    
T  16325796 agctactatattttcttataaatagagctcatttgtaacattgagatacacacattattgaataagaatattgttcctattctctcttcttctccttctc 16325697  T
Q  213 tct 215  Q
    |||    
T  16325696 tct 16325694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 16334921 - 16334738
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16334921 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactatattttcttat 16334822  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||| |  ||||||| ||| |||||||||||||||||    
T  16334821 aaatagagctcatttgtaacattgagatacacacattattgaataagaatattgttcctattatctcttcttctccttctctct 16334738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 30673877 - 30673677
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  30673877 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcata 30673778  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    ||||||||||||| | ||||||||||| ||||||||||||||  |||| | ||||||||||||||||||||| ||| |||||||| | ||||||||||||    
T  30673777 agctactctatttccctataaatagagttcatttgtaacatt--gataaatacattagtgaataagaatactgctcttattctctctccttctccttctc 30673680  T
Q  213 tct 215  Q
    |||    
T  30673679 tct 30673677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 30679951 - 30679770
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  30679951 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctatttccctat 30679852  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    |||||||||||||||||||||||  |||| | ||||||||||||||||||||| ||| |||||||| |||||||||||||||||    
T  30679851 aaatagagctcatttgtaacatt--gataaatacattagtgaataagaatactgctcttattctctcttcttctccttctctct 30679770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 911025 - 910827
Alignment:
Q  13 gatggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcat 111  Q
    |||||||||||||| || ||||||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||||||||||| |||||||||||||||    
T  911025 gatggacatccaagaggaagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcat 910927  T
Q  112 aagctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttct 211  Q
    |||||||||||||||| ||||||||||||||||||||||||||  |||||||| || |||||||||||||||| |||||||| ||  |||||||||||||    
T  910926 aagctactctattttcctataaatagagctcatttgtaacatt--gatacacagatcagtgaataagaatactgctcctattttc--ttcttctccttct 910831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 1874170 - 1873970
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||| || ||||||||||||| ||||||    
T  1874170 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattatgttattgggcttaattcata 1874071  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
     |||||||||||| | |||||||| ||||||||||||||||| ||||  |||||| ||||||||||||||||  |||||||||||  |||||||||||||    
T  1874070 ggctactctatttccctataaatatagctcatttgtaacattgagat--acacatcagtgaataagaatacttttcctattctctcctcttctccttctc 1873973  T
Q  213 tct 215  Q
    |||    
T  1873972 tct 1873970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 1913892 - 1913709
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||| |||||||||||||||| |||||| |||||||||||| | |||    
T  1913892 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataggctactctatttccctat 1913793  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||| |||||||| ||||||||| |||||||    
T  1913792 aaatagagctcatttgtaacattgagatacacacatcagtgaataagaatactgctcatattctctcttcttctccgtctctct 1913709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 25687732 - 25687536
Alignment:
Q  18 acatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagct 116  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||| |||||||||||| ||||||||||    
T  25687732 acatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactagtttattgggcttaattcataagct 25687633  T
Q  117 actctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    ||||||||| | |||||| |||||||||||||||||||  |||| | | || |||||||||||||||| |||||||| ||| |||||||||||||||||    
T  25687632 actctatttccctataaacagagctcatttgtaacatt--gatatatagatcagtgaataagaatactgctcctattttctcttcttctccttctctct 25687536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 32 - 215
Target Start/End: Original strand, 23187962 - 23188144
Alignment:
Q  32 gtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttctta 130  Q
    |||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| | ||    
T  23187962 gtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtggaccatactactagtttattgagcttagttcataagctactctatttcccta 23188061  T
Q  131 taaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    ||||||||||||||||||||||||  |||| ||| || ||||||||||||||||  ||||||||||  |||||||||||||||||    
T  23188062 taaatagagctcatttgtaacatt--gatagacagataagtgaataagaatactgttcctattctcacttcttctccttctctct 23188144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 23200507 - 23200707
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    ||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||    
T  23200507 atggacatctaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactagtttattgggcttagttcata 23200606  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    || ||||||| || | |||||||||| |||||||||||||||  |||| ||| || || ||||| |||||||  ||||||||||| ||||||||||||||    
T  23200607 agttactctacttccctataaatagaactcatttgtaacatt--gatagacagatcagcgaatacgaatactgttcctattctctcttcttctccttctc 23200704  T
Q  213 tct 215  Q
    |||    
T  23200705 tct 23200707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 12435525 - 12435360
Alignment:
Q  13 gatggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcat 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||||||||||| |||||||||||||||    
T  12435525 gatggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcat 12435427  T
Q  112 aagctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaata 182  Q
    |||||||||||||| | ||||||||||||||||||||||||||  |||||||||  |||||||||||||||    
T  12435426 aagctactctatttccctataaatagagctcatttgtaacatt--gatacacac--tagtgaataagaata 12435360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 31 - 215
Target Start/End: Original strand, 18890000 - 18890184
Alignment:
Q  31 agtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttctt 129  Q
    ||||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||||||||||||| | |    
T  18890000 agtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataagctactctatttccct 18890099  T
Q  130 ataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcc-tattctctattcttctccttctctct 215  Q
    ||||||||| |||||||||||||||  |||| ||||||||||||||||||||| | |||| |||||||| |||||||| ||||||||    
T  18890100 ataaatagaactcatttgtaacatt--gatatacacattagtgaataagaatatttctccttattctctcttcttctctttctctct 18890184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 35 - 215
Target Start/End: Complemental strand, 25697483 - 25697304
Alignment:
Q  35 ttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttataa 133  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| ||||||| |||| ||||||||||||||||||| | |||||    
T  25697483 ttataaatattaatagtggatatccaaatagcaaatgtgttagtgggccatactactagtttattggacttaattcataagctactctatttccctataa 25697384  T
Q  134 atagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    |||||||||||||||||||||  |||| | | || |||||||||||||||| |||||||| ||| |||||||||||||||||    
T  25697383 atagagctcatttgtaacatt--gatatatagatcagtgaataagaatactgctcctattttctcttcttctccttctctct 25697304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 42411087 - 42411252
Alignment:
Q  13 gatggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcat 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||||||||||| |||||||||||||||    
T  42411087 gatggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcat 42411185  T
Q  112 aagctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaata 182  Q
    |||||||||||||| | ||||||||||||||||||||||||||  |||||| ||  |||||||||||||||    
T  42411186 aagctactctatttccctataaatagagctcatttgtaacatt--gatacaaac--tagtgaataagaata 42411252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 37 - 211
Target Start/End: Complemental strand, 12665859 - 12665689
Alignment:
Q  37 ataaatattaatagtggatat----caaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttata 132  Q
    ||||||||||||||||||| |    ||||||  |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12665859 ataaatattaatagtggatgttgtccaaataataaatgtgttattgggccatactactaggttattgg-cttagttcataagctactctattttcttata 12665761  T
Q  133 aatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttct 211  Q
    ||||||||||||||||       ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  12665760 aatagagctcatttgt-------agatacacacattagtgaataagaatactgctcctattctctcttcttctccttct 12665689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 29333617 - 29333782
Alignment:
Q  13 gatggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcat 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||||||||||| |||||||||||||||    
T  29333617 gatggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcat 29333715  T
Q  112 aagctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaata 182  Q
    || ||||||||||| | |||||||| |||||||||||||||||  |||||||||  |||||||||||||||    
T  29333716 aacctactctatttccctataaataaagctcatttgtaacatt--gatacacac--tagtgaataagaata 29333782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 12429061 - 12428861
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||| ||||||||||||||||||||||||||| || ||| |||||||  |||  ||| |||||||| |||||||||||||||||||||||    
T  12429061 atggacatccaaggaggagtgttataaatattaatagtggatgtccaaagagcaaataggtttatgggccatactaataggttattgggcttagttcata 12428962  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    ||||||||||||| | |||||||||| ||||||||||||| |  ||   | | ||  ||||||||||||||| |||||||||||| ||||||||||||||    
T  12428961 agctactctatttccctataaatagaactcatttgtaacagt--gagtgagagatccgtgaataagaatactgctcctattctctcttcttctccttctc 12428864  T
Q  213 tct 215  Q
    |||    
T  12428863 tct 12428861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 182
Target Start/End: Original strand, 42404643 - 42404788
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| | |||    
T  42404643 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttccctat 42404741  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaata 182  Q
    |||||||||||||||||||||||  |||||||||  |||||||||||||||    
T  42404742 aaatagagctcatttgtaacatt--gatacacac--tagtgaataagaata 42404788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 35 - 215
Target Start/End: Complemental strand, 12439449 - 12439270
Alignment:
Q  35 ttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttataa 133  Q
    ||||||||||||||||||||| || |||||||||||  |||  ||| |||||||| |||||||||||||||||||||||||||||||||||| | |||||    
T  12439449 ttataaatattaatagtggatgtccaaatagcaaataggtttatgggccatactaataggttattgggcttagttcataagctactctatttccctataa 12439350  T
Q  134 atagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    ||||| ||||||||||||| |  ||   | | ||  ||||||||||||||| ||| |||||||| |||||||||||||||||    
T  12439349 atagaactcatttgtaacagt--gagtgagagatcggtgaataagaatactgctcatattctctcttcttctccttctctct 12439270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 33 - 182
Target Start/End: Complemental strand, 917447 - 917302
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||| ||||| || ||||||||||| ||||| ||| | ||||||||||||| | ||||||||||||||||||||||||||| | |||    
T  917447 tgttataaatattaatattggatgtctaaatagcaaatatgttagtgggctatactactaggtt-tcgggcttagttcataagctactctatttccctat 917349  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaata 182  Q
    |||||||||||||||||||||||  |||||||||  |||||||||| ||||    
T  917348 aaatagagctcatttgtaacatt--gatacacac--tagtgaataaaaata 917302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 33360341 - 33360159
Alignment:
Q  33 tgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||| |||| || | |||||||||||||||||| | ||| |||||| || ||||||| | |||||| ||||||||||||||||||||||    
T  33360341 tgttataaatattaagagtgaatgtacaaatagcaaatgtgttagttgactatactattaagttattgagtttagtttataagctactctattttcttat 33360242  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactact-cctattctctattcttctccttctctct 215  Q
    |||||||||||||| |||||||| ||||  |  ||| ||||||||| ||| || || |||||||||| ||||||  |||||||||    
T  33360241 aaatagagctcattcgtaacattgagat--atgcataagtgaataaaaatgcttctccctattctctcttcttcaacttctctct 33360159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 4393932 - 4393790
Alignment:
Q  13 gatggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcat 111  Q
    ||||||||||||| || |||||||||||||||||||||||||| || ||||| |||||| ||||  |   ||||||||||| ||||| || ||| |||||    
T  4393932 gatggacatccaatggagagtgttataaatattaatagtggatgtctaaataacaaatgggttaacgagtcatactactagattattaggtttaattcat 4393833  T
Q  112 aagctactctattttcttataaatagagctcatttgtaacatt 154  Q
    |||||||| ||||| | |||||||| |||||||||||||||||    
T  4393832 aagctactttatttccctataaataaagctcatttgtaacatt 4393790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 48305499 - 48305320
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||| ||||||| || |||||||||| | |||| ||| |||||| ||||| |||||| |||||||| ||| |||||||||||| | |||    
T  48305499 tgttataaatattaaaagtggatgtccaaatagcaaacgcgttaatgggccataccactagattattgagcttagtttatatgctactctatttccctat 48305400  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    |||||||| ||| |||||||||| || ||   |||| |||||||||||||| | | | |||||||| |||||||| ||||||||    
T  48305399 aaatagagttca-ttgtaacattcag-ta-gtacatcagtgaataagaatatttc-cttattctctcttcttctctttctctct 48305320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 55325479 - 55325663
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattgg---accatactactaggttattgggcttagttcataagctactctattttct 128  Q
    ||||||||||||||||| | ||| || ||||||||||||||||| |||   |  |||||| ||||||||||  |||||||||||| ||||| ||||| |     
T  55325479 tgttataaatattaataatagatgtccaaatagcaaatgtgttagtgggtcataatactattaggttattgaacttagttcataaactactttatttccc 55325578  T
Q  129 tataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactc-ctattctctattcttctccttctctct 215  Q
    |||||||| ||||||||||| ||||| |||   | |||| ||||||||| |||||| |||  ||||||||  ||||||| ||||||||    
T  55325579 tataaataaagctcatttgttacattgaga---aaacatcagtgaataataatacttctctttattctctcatcttctcattctctct 55325663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 42119907 - 42119796
Alignment:
Q  21 tccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctact 119  Q
    |||||||| || ||||||||||||||||||||||| | |||||||||||||  ||| |||  ||||||||||| |||||| ||||| | ||||| |||||    
T  42119907 tccaagggagaatgttataaatattaatagtggatgtccaaatagcaaatggattaatgggtcatactactagattattgagcttaatccataaactact 42119808  T
Q  120 ctattttcttat 131  Q
     |||||| ||||    
T  42119807 ttatttttttat 42119796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 6162225 - 6162272
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggatatc 58  Q
    |||||||||||||||||||||||||||| |||||||  ||||||||||    
T  6162225 gagatggacatccaagggggagtgttatgaatattacaagtggatatc 6162272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 53982073 - 53982164
Alignment:
Q  12 agatggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggc 102  Q
    ||||||||||||||||||||||||||| |||||||  ||||||| | || ||||||| || |||||| || ||||||  ||| |||||||||    
T  53982073 agatggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttatttgatcatactgttagcttattgggc 53982164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 20192771 - 20192682
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggc 102  Q
    ||||||||||||||||||||||||| |||||||  ||||||| | || ||||||| || ||||||||| |||| |  ||| |||||||||    
T  20192771 atggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 20192682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 43287567 - 43287369
Alignment:
Q  18 acatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagct 116  Q
    |||||||||||| ||||||||||| ||||||||| ||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43287567 acatccaaggggaagtgttataaacattaatagtagatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagct 43287468  T
Q  117 actctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||    
T  43287467 actctattttcttataaatagagctcatttgtaacattgagatacacacattagtgaataagaatactgctcctattctctcttcttcttcttctctct 43287369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 24053466 - 24053266
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    ||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24053466 atggacatctaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcata 24053367  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| | |||||||||||| ||||||||||||||    
T  24053366 agctactctattttcttataaatagagctcatttgtaatattgagatacatacattagtgaataagaata-tgctcctattctcttttcttctccttctc 24053268  T
Q  213 tc 214  Q
    ||    
T  24053267 tc 24053266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 19437715 - 19437515
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||    
T  19437715 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcata 19437616  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    ||||||||||||| | ||||||||||||||||||||||||||  || ||||||||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  19437615 agctactctatttccctataaatagagctcatttgtaacatt--gagacacacattagtgaataagaatactgctcttattctctcttcttctccttctc 19437518  T
Q  213 tct 215  Q
    |||    
T  19437517 tct 19437515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 43293297 - 43293114
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43293297 tgttataaacattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactctattttcttat 43293198  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    |||||||||||||||||||||||  ||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||    
T  43293197 aaatagagctcatttgtaacattgggatacacacatcagtgaataagaatactgctcctattctctcttcttctccttctctct 43293114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 31 - 214
Target Start/End: Complemental strand, 24056784 - 24056601
Alignment:
Q  31 agtgttataaatattaatagtggatatcaa-atagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttctt 129  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24056784 agtgttataaatattaatagtggatgtccagatagcaaatgtgttattgg-ccatactactaggttattggacttagttcataagctactctattttctt 24056686  T
Q  130 ataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctc 214  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||    
T  24056685 ataaatagagctcatttgtaacattgagatacacacattagtgaataagaatactgcttctattctcttttcttctccttctctc 24056601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 25445236 - 25445037
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    ||||||||| |||||| ||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||    
T  25445236 atggacatctaagggg-agtgttataaatattaatagtggatgtccaaatagcaaatgtgttaatgggccatactactaggttattgggcttaattcata 25445138  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    ||||||||||||| | ||||||||||||||||||||||||||  ||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||    
T  25445137 agctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaatactcctcctattctctcttcttctccttctc 25445040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 19443271 - 19443090
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  19443271 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctattttcctat 19443172  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    |||||||||||||||||||||||  || ||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||    
T  19443171 aaatagagctcatttgtaacatt--gagacacacattagtgaataagaatactgctcttattctctcttcttctccttctctct 19443090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 25454876 - 25454699
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    |||||||||||||||||||| || || ||||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||||||||| | |||    
T  25454876 tgttataaatattaatagtgaatgtccaaatagcaaatgtgttagtgggccatactactaggttattgagcttaattcataagctactctatttccctat 25454777  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    |||||||||||||||||||||||  ||||||||||| | |||||||||||||| |||||||||    |||||||||||||||||    
T  25454776 aaatagagctcatttgtaacatt--gatacacacatcattgaataagaatactgctcctattc----ttcttctccttctctct 25454699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 31437151 - 31437273
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||| | |||||| |||| ||||||||| ||||  ||||||||||||||||||||||||||||||||||| |||    
T  31437151 tgttataaatattaatagtggatgtccaaacaacaaatgagttaatggaccataatactgtgttattgggcttagttcataagctactctattttcctat 31437250  T
Q  132 aaatagagctcatttgtaacatt 154  Q
    ||||| || ||||||||||||||    
T  31437251 aaataaagttcatttgtaacatt 31437273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 31433045 - 31433167
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || |||||||||||  |||| |||| ||| | ||||| |||||| |||||||||||||| || ||||||| | |||    
T  31433045 tgttataaatattaatagtggatgtccaaatagcaaattagttaatggagcatgcaactagtttattgagcttagttcataagatattctatttccctat 31433144  T
Q  132 aaatagagctcatttgtaacatt 154  Q
    |||||  | ||||||||||||||    
T  31433145 aaataatgttcatttgtaacatt 31433167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 22430325 - 22430417
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggc 102  Q
    |||||||||||||||||||||||||||| |||||||  ||||||| | || ||||||| || ||||||||| |||| |  ||| |||||||||    
T  22430325 gagatggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 22430417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 22435919 - 22436011
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggc 102  Q
    |||||||||||||||||||||||||||| |||||||  ||||||| | || ||||||| || ||||||||| |||| |  ||| |||||||||    
T  22435919 gagatggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 22436011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 43776968 - 43777060
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggc 102  Q
    |||||||||||||||||||||||||||| |||||||  ||||||| | || ||||||| || ||||||||| |||| |  ||| |||||||||    
T  43776968 gagatggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 43777060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 1525619 - 1525696
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatact 87  Q
    |||||||||||||||||||||||||||| |||||||  ||||||| | || |||| || || ||||||||| ||||||    
T  1525619 gagatggacatccaagggggagtgttatgaatattataagtggatgtccatatagaaattgggttattggatcatact 1525696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 8872289 - 8872362
Alignment:
Q  81 ccatactactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacatt 154  Q
    |||||||| | | ||||||||||||||  ||| |||||| ||||| | ||||||||||| ||||||||||||||    
T  8872289 ccatactatttgattattgggcttagtctataggctactatatttccctataaatagagttcatttgtaacatt 8872362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 636259 - 636303
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggat 55  Q
    |||||||||||||||||||||||||||| |||||||  |||||||    
T  636259 gagatggacatccaagggggagtgttatgaatattacaagtggat 636303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 7910145 - 7910101
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggat 55  Q
    |||||||||||||||||||||||||||| |||||||  |||||||    
T  7910145 gagatggacatccaagggggagtgttatgaatattacaagtggat 7910101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 14898760 - 14898795
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatatta 46  Q
    |||||||||||||||||||||||||||| |||||||    
T  14898760 gagatggacatccaagggggagtgttatgaatatta 14898795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 5836257 - 5836224
Alignment:
Q  13 gatggacatccaagggggagtgttataaatatta 46  Q
    |||||||||||||||||||||||||| |||||||    
T  5836257 gatggacatccaagggggagtgttatgaatatta 5836224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 5836213 - 5836153
Alignment:
Q  72 gttattggaccatactactaggttattgggcttagttcataagctactctattttcttata 132  Q
    |||| ||||||||| ||||||  |||| |||||||| |||||| |||||||||||| ||||    
T  5836213 gttaatggaccatattactagactattaggcttagtccataagatactctattttcctata 5836153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 37356911 - 37356709
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37356911 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcata 37356812  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    ||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||   ||||||||||| ||||||||||||||    
T  37356811 agctactatattttcttataaatagagctcatttataacattgagatacacacattattgaataagaataccgttcctattctctcttcttctccttctc 37356712  T
Q  213 tct 215  Q
    |||    
T  37356711 tct 37356709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 37365313 - 37365127
Alignment:
Q  30 gagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttct 128  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37365313 gagtgttataaatattaatagtggatgtccaaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactatattttct 37365214  T
Q  129 tataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||||||| |||||||||||||||||    
T  37365213 tataaatagagctcatttgtaacattgagatacacacattattgaataagaatactgttcctattctctcttcttctccttctctct 37365127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 35625411 - 35625228
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  35625411 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactagattattgggcttagttcataagctactatattttcttat 35625312  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  35625311 aaatagagctcatttgtaacattgagatacacacattattgaataagaatactgctcctattctctcttcttctccttctctct 35625228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 18535157 - 18534957
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  18535157 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcata 18535058  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    ||||||||||||||| ||||||||||||||||||||||||||  |||| ||| || |||||||||||||||| |||| ||| ||| ||||||||||||||    
T  18535057 agctactctattttcctataaatagagctcatttgtaacatt--gatatacagatcagtgaataagaatactgctccgattttctcttcttctccttctc 18534960  T
Q  213 tct 215  Q
    |||    
T  18534959 tct 18534957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 31093125 - 31092925
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||    
T  31093125 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcata 31093026  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    ||||||||||||| | ||||||||||||||||||||||||||  |||| | |||| ||||||||| |||||| |||||||||||| ||||||||||||||    
T  31093025 agctactctatttccctataaatagagctcatttgtaacatt--gatatatacatcagtgaataaaaatactgctcctattctctcttcttctccttctc 31092928  T
Q  213 tct 215  Q
    |||    
T  31092927 tct 31092925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 11660158 - 11660358
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatcaaa-tagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || || || ||||||||||| ||| ||||||||||| ||||||||||||| ||||||    
T  11660158 atggacatccaagggggagtgttataaatattaatagtggatgtccaagtaacaaatgtgttagtgggccatactactatgttattgggcttaattcata 11660257  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    ||||||||||||| | ||||||||||||||||||||||||||  |||| |||||| |||||||||||||||| ||| |||||||| ||||||||||||||    
T  11660258 agctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgctcatattctctcttcttctccttctc 11660355  T
Q  213 tct 215  Q
    |||    
T  11660356 tct 11660358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 27347326 - 27347143
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||| | |||    
T  27347326 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgagccatactactaggttattgggcttaattcataagctactctatttccctat 27347227  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||  ||| |||||||| |||||||||||||||||    
T  27347226 aaatagagctcatttgtaacattgagatacacacatcagtgaataagaatacatctcttattctctcttcttctccttctctct 27347143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 18540864 - 18540683
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18540864 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctattttcctat 18540765  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    |||||||||||||||||||||||  |||| ||| || |||||||||||||||| |||||||| ||| |||||||||||||||||    
T  18540764 aaatagagctcatttgtaacatt--gatatacagatcagtgaataagaatactgctcctattttctcttcttctccttctctct 18540683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 33 - 216
Target Start/End: Original strand, 38736039 - 38736223
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||| | || |||||| |||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38736039 tgttataaatattaatagtggttgtccaaatagaaaatatgttattgggccatactattaggttattgggcttagttcataagctactctattttcttat 38736138  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctctg 216  Q
    |||||||| |||||||||||||| ||||||| |||| ||||||||| |||||| ||| |||||||| ||||||||||||||||||    
T  38736139 aaatagagttcatttgtaacattcagatacatacatcagtgaataataatactgctcatattctctcttcttctccttctctctg 38736223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 11654020 - 11654201
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||| ||||||| | |||    
T  11654020 tgttataaatattaatagtggatatccaaatagcaaatgtgttagtggatcatactactatgttattgggcttaattcataagctattctatttccctat 11654119  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    |||||||| ||||||||||||||  |||| |||||| | |||||||||||||| |||||||||||| |||||||||||||||||    
T  11654120 aaatagagttcatttgtaacatt--gatatacacatcaatgaataagaatactgctcctattctctcttcttctccttctctct 11654201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 31099712 - 31099531
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| | |||    
T  31099712 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctat 31099613  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    |||||||||||||||||||||||  |||| | |||| ||||||||| |||||| ||| |||||||| |||||||||||||||||    
T  31099612 aaatagagctcatttgtaacatt--gatatatacatcagtgaataaaaatactgctcttattctctcttcttctccttctctct 31099531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 38991079 - 38991244
Alignment:
Q  13 gatggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcat 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||||||||||| |||||||||||||||    
T  38991079 gatggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcat 38991177  T
Q  112 aagctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaata 182  Q
    |||||||||||||| | ||||||||||||||||||||||||||  |||||||||  |||||||||||||||    
T  38991178 aagctactctatttccctataaatagagctcatttgtaacatt--gatacacac--tagtgaataagaata 38991244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 28519255 - 28519405
Alignment:
Q  13 gatggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcat 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||||||||||| |||||||||||||||    
T  28519255 gatggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcat 28519353  T
Q  112 aagctactctattttcttataaatagagctcatttgtaacattaagatacac 163  Q
    |||||||||||||| | |||||||||||||||||||||||||| ||| ||||    
T  28519354 aagctactctatttccctataaatagagctcatttgtaacattgagacacac 28519405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 7876091 - 7876271
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    |||||||||||||||||||| || || ||||| ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| ||||| | |||    
T  7876091 tgttataaatattaatagtgaatgtccaaataacaaatgtgttagtggaccatactactaggttattaggcttagttcgtaagctactatatttccctat 7876190  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||| | | | |||||||| |||||||| || |||||    
T  7876191 aaatagagctcatttgtaacattgagat--acacattagtgaataagaatatttc-cttattctctcttcttctcattttctct 7876271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 182
Target Start/End: Original strand, 38984912 - 38985057
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| | |||    
T  38984912 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttccctat 38985010  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaata 182  Q
    |||||||||||||||||||||||  |||||||||  |||||||||||||||    
T  38985011 aaatagagctcatttgtaacatt--gatacacac--tagtgaataagaata 38985057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 31 - 182
Target Start/End: Original strand, 28512810 - 28512955
Alignment:
Q  31 agtgttataaatattaatagtggatatcaaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttctta 130  Q
    ||||||||||||||||||| ||||| || || ||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| | ||    
T  28512810 agtgttataaatattaatattggatgtccaa-agcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcataagctactctatttcccta 28512907  T
Q  131 taaatagagctcatttgtaacattaagatacacacattagtgaataagaata 182  Q
    |||||||||||||||||||||||| ||    ||||| |||||||||||||||    
T  28512908 taaatagagctcatttgtaacattgag----acacactagtgaataagaata 28512955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 39492740 - 39492921
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || |||||||||||  |||  ||  |||||||| ||| ||||||||||||||  |||| |||||||||||   |||    
T  39492740 tgttataaatattaatagtggatgtccaaatagcaaataggtttatgagccatactaatagattattgggcttagtctataaactactctatttctctat 39492839  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    ||||| |  |||||||||| | | ||||  | | || |||||||||||||||| ||| |||||||| |||||||||||||||||    
T  39492840 aaataaaattcatttgtaagagtgagat--atatatcagtgaataagaatactgctcatattctctcttcttctccttctctct 39492921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 15716601 - 15716693
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggc 102  Q
    |||||| ||||||||||||||||||||| |||||||  ||||||| | || ||||||| || ||||||||| |||| |  ||| |||||||||    
T  15716601 gagatgaacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 15716693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 27179152 - 27179108
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggat 55  Q
    |||||||||||||||||||||||||||| |||||||  |||||||    
T  27179152 gagatggacatccaagggggagtgttatgaatattacaagtggat 27179108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 103
Target Start/End: Complemental strand, 33493118 - 33493026
Alignment:
Q  12 agatggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggct 103  Q
    ||||||||||||||||||||||||||| |||||||  ||||||| | || ||||||| || ||| ||||| |||| |  ||| ||||||||||    
T  33493118 agatggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgagttgttggatcatattgttagcttattgggct 33493026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 29547720 - 29547753
Alignment:
Q  13 gatggacatccaagggggagtgttataaatatta 46  Q
    |||||||||||||||||||||||||| |||||||    
T  29547720 gatggacatccaagggggagtgttatgaatatta 29547753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 111856 - 112058
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||    
T  111856 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcata 111955  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
     |||||||||||| | ||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||    
T  111956 ggctactctatttccctataaatagagttcatttgtaacattgagatacacacatcagtgaataagaatactgctcctattctctcttcttctccttctc 112055  T
Q  213 tct 215  Q
    |||    
T  112056 tct 112058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 106130 - 106175
Alignment:
Q  170 gtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||    
T  106130 gtgaataagaatactgctcctattctctcttcttctccttctctct 106175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 23053557 - 23053357
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||    
T  23053557 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgagcttaattcata 23053458  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    ||||||||||||| | ||||||||||||||||||||||||||  || ||||||||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  23053457 agctactctatttccctataaatagagctcatttgtaacatt--gagacacacattagtgaataagaatactgctcttattctctcttcttctccttctc 23053360  T
Q  213 tct 215  Q
    |||    
T  23053359 tct 23053357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 25365573 - 25365378
Alignment:
Q  13 gatggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggcttagttcat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25365573 gatggacatccaagggggagtgttataaatattaatagtggatgttcaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcat 25365474  T
Q  112 aagctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcc-tattctctattcttctc 206  Q
    |||||||||||||||| ||||||||||||||||||||||||||   | ||||||||||||||||||||||| | |||| |||||||| ||||||||    
T  25365473 aagctactctattttcctataaatagagctcatttgtaacattgtaaaacacacattagtgaataagaatatttctccttattctctcttcttctc 25365378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 35264718 - 35264518
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||| |||||||||||||||| ||||||    
T  35264718 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcata 35264619  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
     |||||||||||| | |||||||||||||||||||||||||| ||||  |||||| |||||||||||||||| |||||||||||| ||||||||||||||    
T  35264618 ggctactctatttccctataaatagagctcatttgtaacattgagat--acacatcagtgaataagaatactgctcctattctctcttcttctccttctc 35264521  T
Q  213 tct 215  Q
    |||    
T  35264520 tct 35264518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 23059113 - 23058932
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||| | |||    
T  23059113 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatttccctat 23059014  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    |||||||||||||||||||||||  || ||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||    
T  23059013 aaatagagctcatttgtaacatt--gagacacacattagtgaataagaatactgctcttattctctcttcttctccttctctct 23058932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 21171365 - 21171196
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| ||| ||||||||||||||||||||||||| ||||||    
T  21171365 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatggcaaatgtgttagtgggccatactactaggttattgggcttaattcata 21171266  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatact 184  Q
    ||||||||||||| | |||||||||||||||||||||||||| ||||  |||||| ||||||||||||||||    
T  21171265 agctactctatttccctataaatagagctcatttgtaacattgagat--acacataagtgaataagaatact 21171196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 35270440 - 35270259
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||| |||||||||||||||| |||||| |||||||||||| | |||    
T  35270440 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactattaggttattgggcttaattcataggctactctatttccctat 35270341  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    ||||||||||||||||||||||| ||||  |||||| |||||||||||||||| |||||||||||| |||||||||||||||||    
T  35270340 aaatagagctcatttgtaacattgagat--acacatcagtgaataagaatactgctcctattctctcttcttctccttctctct 35270259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 39654086 - 39653905
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||    
T  39654086 tgttataaatattaatagtggatgtccaaataacaaatgtgttagtggaccatactactaggttattgggcttaattcataagctactatatttccttat 39653987  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    ||||||||||||||| |||||||  |||| |||||| |||||||||||||||| ||| |||||||| |||||||||||||||||    
T  39653986 aaatagagctcatttataacatt--gatatacacatcagtgaataagaatactgctcttattctctcttcttctccttctctct 39653905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 16675545 - 16675711
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    ||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||| |||||||||||||||   ||||||| ||||||    
T  16675545 atggacatccaagggggagtgttataaatattaatagtgaatgtccaaatagcaaatgtgttagtgggccatactactaggtt---gggcttaattcata 16675641  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatact 184  Q
    ||||||| ||||| | |||||||||||||||||||||||||| ||||  |||||| ||||||||||||||||    
T  16675642 agctactatatttccctataaatagagctcatttgtaacattgagat--acacataagtgaataagaatact 16675711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 31 - 215
Target Start/End: Complemental strand, 21178211 - 21178025
Alignment:
Q  31 agtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactc--tattttc 127  Q
    ||||||||||||||||||||||||| | ||||| |||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  21178211 agtgttataaatattaatagtggatgttcaaatggcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactctatattttc 21178112  T
Q  128 ttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactc-ctattctctattcttctccttctctct 215  Q
     |||||||||||||||||||||||||| ||||  |||||| ||||||||||||||||  || ||| | ||| |||||||||||||||||    
T  21178111 ctataaatagagctcatttgtaacattgagat--acacataagtgaataagaatacttttctctagtatctcttcttctccttctctct 21178025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 28367163 - 28367071
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggatatcaa-atagcaaatgtgttattggaccatactactaggttattgggc 102  Q
    |||||||||||||||||||||||||||| |||||||  ||||||| |||| ||||||| || ||||||||| |||| |  ||| |||||||||    
T  28367163 gagatggacatccaagggggagtgttatgaatattacaagtggatgtcaatatagcaattgagttattggatcatattgttagcttattgggc 28367071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 30957779 - 30957704
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccata 85  Q
    |||||||||||||||||||||||||||| |||||||  ||||||| | || ||||||| || ||||||||| ||||    
T  30957779 gagatggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcata 30957704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 2135902 - 2135850
Alignment:
Q  99 gggcttagttcataagctactctattttcttataaatagagctcatttgtaac 151  Q
    |||||||||  ||||| || ||||||| | |||||||||||||||||||||||    
T  2135902 gggcttagtctataagttaatctatttccatataaatagagctcatttgtaac 2135850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 340471 - 340269
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    ||||||||||||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||  ||||||||||||||||||||||||||||||||    
T  340471 atggacatccaagggggagtgttataaatattaatagcggatgtccaaataacaaatgtgttattgagccatactactaggttattgggcttagttcata 340372  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||| ||||| | |||||||||||| ||||||||  ||||    
T  340371 agctactctattttcttataaatagagctcatttgtaacattgggatacacacatcagtgaataggaatatttctcctattctctcttcttctctctctc 340272  T
Q  213 tct 215  Q
    |||    
T  340271 tct 340269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 29185506 - 29185704
Alignment:
Q  13 gatggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcat 111  Q
    ||||||||||||||||||||||||||   |||||||| ||||| || |||||| |||||||||| ||| |||||||||||||||||||||||||||||||    
T  29185506 gatggacatccaagggggagtgttat---tattaatattggatgtccaaatagaaaatgtgttagtgggccatactactaggttattgggcttagttcat 29185602  T
Q  112 aagctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttct 211  Q
    |||||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| | |||||||||||||    
T  29185603 aagctactctatttccctataaatagagctcatttgtaacatt--gatacacacattagtgaataagaatactgcttctattctttcttcttctccttct 29185700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 29176544 - 29176725
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||| ||||| || ||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||| | |||    
T  29176544 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggtcatactactaggttattgggcttagttcataagctactctatttccctat 29176643  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||||||| | |||||||||||||||||    
T  29176644 aaatagagctcatttgtaacatt--gatacacacattagtgaataagaatactgcttctattctttcttcttctccttctctct 29176725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 33 - 197
Target Start/End: Complemental strand, 346686 - 346521
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    |||||||||||||||||| |||| || ||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  346686 tgttataaatattaatagcggatgtccaaatagcaaatgtgttattgagccatactactaggttattgagcttagttcataagctactctattttcttat 346587  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctct 197  Q
    |||||||||||||||||||||||  ||||||||||| |||||||| ||||| | ||||||||||||    
T  346586 aaatagagctcatttgtaacattgggatacacacatcagtgaataggaatatttctcctattctct 346521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 8248091 - 8248292
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||| |||||| ||||| |||||| ||||||    
T  8248091 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatattactagattattaggcttaattcata 8248190  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactc-ctattctctattcttctccttct 211  Q
    ||||||||||||||| |||||||||||||||||||||||||| || |  |||  | ||||||||||||||||  || ||| | ||| |||||||||||||    
T  8248191 agctactctattttcctataaatagagctcatttgtaacattgagtt--acatctaagtgaataagaatacttttctctagtatctcttcttctccttct 8248288  T
Q  212 ctct 215  Q
    ||||    
T  8248289 ctct 8248292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 182
Target Start/End: Original strand, 22822535 - 22822684
Alignment:
Q  31 agtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttctt 129  Q
    ||||||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||||| | |    
T  22822535 agtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccct 22822633  T
Q  130 ataaatagagctcatttgtaacattaagatacacacattagtgaataagaata 182  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  22822634 ataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 22822684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 33 - 182
Target Start/End: Original strand, 22826840 - 22826987
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||||| | |||    
T  22826840 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccctat 22826938  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaata 182  Q
    |||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  22826939 aaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 22826987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 8242541 - 8242723
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||| |||  |||| |||||| ||||| |||||| ||||||||||||||||||| | |||    
T  8242541 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggtcatattactagattattaggcttaattcataagctactctatttccctat 8242640  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactc-ctattctctattcttctccttctctct 215  Q
    ||||||||||||||||||||||| || |  |||  | ||||||||||||||||  || ||| | ||| |||||||||||||||||    
T  8242641 aaatagagctcatttgtaacattgagtt--acatctaagtgaataagaatacttttctctagtatctcttcttctccttctctct 8242723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 25830566 - 25830376
Alignment:
Q  13 gatggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcat 111  Q
    ||||||||| ||||||| ||||||||||||||||||||||||| || |||||||||||  |||| ||| | || ||||||| || ||||||||||| |||    
T  25830566 gatggacattcaagggg-agtgttataaatattaatagtggatgtccaaatagcaaattggttaatgggctat-ctactagattgttgggcttagtccat 25830469  T
Q  112 aagctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcc-tattctctattcttct 205  Q
    |||||| | ||||| | |||||||||||||| |||||| |||| ||  ||||||   |||||||||||||||| |||| |||||||| |||||||    
T  25830468 aagctattatatttccctataaatagagctcctttgtagcattgagggacacac--cagtgaataagaatacttctccttattctctcttcttct 25830376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 117
Target Start/End: Complemental strand, 2068882 - 2068797
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagcta 117  Q
    ||||||||||||||||||||||| || |||||||||||| |||| | | | |||||| ||| | |||||||||||| |||||||||    
T  2068882 tgttataaatattaatagtggatgtccaaatagcaaatgagttaataggctatactaatagatgattgggcttagtccataagcta 2068797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 25499033 - 25499121
Alignment:
Q  13 gatggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgg 100  Q
    |||||||||||||||||||||||||| |||||||  ||||||| | || ||||||| |  ||||||||  ||||||| ||| |||||||    
T  25499033 gatggacatccaagggggagtgttatgaatattataagtggatgtccatatagcaattaggttattgggtcatactattagcttattgg 25499121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 32148454 - 32148498
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggat 55  Q
    |||||||||||||||||||||||||||| |||||||  |||||||    
T  32148454 gagatggacatccaagggggagtgttatgaatattacaagtggat 32148498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 42208874 - 42208945
Alignment:
Q  15 tggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccata 85  Q
    |||||||||||||||||||||||| |||||||  ||||||| | || ||||||| || ||||||||| ||||    
T  42208874 tggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcata 42208945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 558052 - 558010
Alignment:
Q  13 gatggacatccaagggggagtgttataaatattaatagtggat 55  Q
    |||||||||||||||||||||||||| |||||||  |||||||    
T  558052 gatggacatccaagggggagtgttatgaatattataagtggat 558010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 16648403 - 16648492
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggc 102  Q
    |||||||||||||||||| |||||| |||||||  ||||||| | || ||||||| || ||||||||| |||| |  ||| |||||||||    
T  16648403 atggacatccaagggggaatgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 16648492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 17622764 - 17622853
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggc 102  Q
    |||||||||||||||||| |||||| |||||||  ||||||| | || ||||||| || ||||||||| |||| |  ||| |||||||||    
T  17622764 atggacatccaagggggaatgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 17622853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 33 - 215
Target Start/End: Original strand, 57939 - 58122
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  57939 tgttataaatattaatagtggatgtccaaatagcaaatgtgttattgggccatactactaggttattgggcttagttcataagctactatattttcttat 58038  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||| |  ||||||| ||| |||||||||||||||||    
T  58039 aaatagagctcatttgtaacattgagatacacacattattgaataagaatattgttcctattatctcttcttctccttctctct 58122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 30714393 - 30714193
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| ||| ||||||||||||||||||||||||| ||||||    
T  30714393 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaattgtgttagtgggccatactactaggttattgggcttaattcata 30714294  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    ||||||||||||| | ||||||||||||||||||||||||||  |||| |||||| |||||||||||||||| |||||||||||| |||||||| |||||    
T  30714293 agctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgctcctattctctcttcttctcattctc 30714196  T
Q  213 tct 215  Q
    |||    
T  30714195 tct 30714193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 30722170 - 30721970
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| ||| ||||||||||||||||||||||||| ||||||    
T  30722170 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaattgtgttagtgggccatactactaggttattgggcttaattcata 30722071  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    ||||||||||||| | ||||||||||||||||||||||||||  |||| |||||| |||||||||||||||| |||||||||||| |||||||| |||||    
T  30722070 agctactctatttccctataaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgctcctattctctcttcttctcattctc 30721973  T
Q  213 tct 215  Q
    |||    
T  30721972 tct 30721970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 30727759 - 30727578
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| ||||||| ||     
T  30727759 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttaattcataagctactatattttcctaa 30727660  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    |||||||||||||||||||||||  |||| |||||| |||||||||||||||| |||||||||||| |||||||| ||||||||    
T  30727659 aaatagagctcatttgtaacatt--gatatacacatcagtgaataagaatactgctcctattctctcttcttctcattctctct 30727578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 37209692 - 37209859
Alignment:
Q  13 gatggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcat 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||||||||||| |||||||||||||||    
T  37209692 gatggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcat 37209790  T
Q  112 aagctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaata 182  Q
     ||||||||||||| | ||||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  37209791 tagctactctatttccctataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 37209859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 21247656 - 21247821
Alignment:
Q  13 gatggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcat 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  21247656 gatggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtggaccatactactaggtt-ttgggcttagttcat 21247754  T
Q  112 aagctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaata 182  Q
    |||||||||||||| | ||||||||||||||||||||||||||  |||||| ||  |||||||||||||||    
T  21247755 aagctactctatttccctataaatagagctcatttgtaacatt--gatacagac--tagtgaataagaata 21247821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 27679803 - 27679662
Alignment:
Q  13 gatggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcat 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||||||||||| |||||||||||||||    
T  27679803 gatggacatccaagggggagtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcat 27679705  T
Q  112 aagctactctattttcttataaatagagctcatttgtaacatt 154  Q
    |||||||||||||| | ||||||||||||| ||||||||||||    
T  27679704 aagctactctatttccctataaatagagctaatttgtaacatt 27679662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 182
Target Start/End: Original strand, 37204233 - 37204382
Alignment:
Q  31 agtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttctt 129  Q
    ||||||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||||| | |    
T  37204233 agtgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggcttagttcattagctactctatttccct 37204331  T
Q  130 ataaatagagctcatttgtaacattaagatacacacattagtgaataagaata 182  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  37204332 ataaatagagctcatttgtaacatt--gatacacacatcagtgaataagaata 37204382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 182
Target Start/End: Original strand, 21241172 - 21241317
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | |||    
T  21241172 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtggaccatactactaggtt-ttgggcttagttcataagctactctatttccctat 21241270  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaata 182  Q
    |||||||||||||||||||||||  |||||| ||  |||||||||||||||    
T  21241271 aaatagagctcatttgtaacatt--gatacagac--tagtgaataagaata 21241317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 154
Target Start/End: Complemental strand, 27683565 - 27683444
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||| ||||| || ||||||||||||||||| ||| ||||||||||||||| ||||| |||||||||||| |||||||||| | |||    
T  27683565 tgttataaatattaatattggatgtccaaatagcaaatgtgttagtgggccatactactaggtt-ttgggtttagttcataagttactctatttccctat 27683467  T
Q  132 aaatagagctcatttgtaacatt 154  Q
    |||||||||||||||||||||||    
T  27683466 aaatagagctcatttgtaacatt 27683444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 26196877 - 26197002
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||| |||||||| |||||||||||||||||||||||| | ||||||||||||  |||  ||| |||||||| |||||||||||||||||||||||    
T  26196877 atggacattcaagggggggtgttataaatattaatagtggatgttcaaatagcaaataggtttatgggccatactaataggttattgggcttagttcata 26196976  T
Q  113 agctactctattttcttataaataga 138  Q
    ||||||||||||| | ||||||||||    
T  26196977 agctactctatttccctataaataga 26197002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 215
Target Start/End: Complemental strand, 24042987 - 24042835
Alignment:
Q  58 caaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttataaatagagctcatttgtaacattaag 157  Q
    |||||| ||||||||||| ||| ||||| || ||| ||||||||||||||||||||||||||||||||   |||||||||||||||| |||||||||||     
T  24042987 caaataacaaatgtgttaatgggccataatattagattattgggcttagttcataagctactctatttctctataaatagagctcatatgtaacattaaa 24042888  T
Q  158 atacacacattagtgaataagaatactactcc-tattctctattcttctccttctctct 215  Q
    |||||||      |||||||||||| | |||| | |||||| ||||||| |||||||||    
T  24042887 atacaca------tgaataagaatatttctccttgttctcttttcttcttcttctctct 24042835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 26197089 - 26196996
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattt 125  Q
    ||||||||||||||||||||||| || |||||||||||  |||  | | |||||||| |||||||||||||||||||||||||||  |||||||    
T  26197089 tgttataaatattaatagtggatgtccaaatagcaaataggtttataggccatactaataggttattgggcttagttcataagcttttctattt 26196996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 12756344 - 12756300
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggat 55  Q
    |||||||||||||||||||||||||||| |||||||  |||||||    
T  12756344 gagatggacatccaagggggagtgttatgaatattacaagtggat 12756300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 14006 - 14203
Alignment:
Q  14 atggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcata 112  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||  ||||||||||||||||||| ||||||||||||    
T  14006 atggacatccaagggggagtgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgagccatactactaggttattgagcttagttcata 14105  T
Q  113 agctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctc 212  Q
    ||||||||||||| | ||||||||||||||||||||||||||  || | |||||| |||||||||||||||| |||||||||||| ||||||||||||||    
T  14106 agctactctatttccctataaatagagctcatttgtaacatt--gagagacacatcagtgaataagaatactgctcctattctctcttcttctccttctc 14203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 33 - 206
Target Start/End: Original strand, 9323 - 9496
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9323 tgttataaatattaatagtggatgtccaaatagcaaatgtattattgggccatactactaggttattgggcttagttcataagctactctattttcttat 9422  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctc 206  Q
    |||||||||||||||||||||||  ||||||||||| | |||||||||||| | |||||||||||| ||||||||    
T  9423 aaatagagctcatttgtaacattgggatacacacatca-tgaataagaatatttctcctattctctcttcttctc 9496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 33 - 210
Target Start/End: Original strand, 18738573 - 18738749
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  18738573 tgttataaatattaatagtggatgtccaaatagcaaatgtgttagtgggccatactactaggttattgggcttagttcataagctactctatttacctat 18738672  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttc 210  Q
    |||||||||||||||||||||||  || | |||| | ||| |||||||||||| |||||||| ||| ||||||||||||    
T  18738673 aaatagagctcatttgtaacatt--gagagacacgtcagtaaataagaatactgctcctattttctcttcttctccttc 18738749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 23427462 - 23427627
Alignment:
Q  13 gatggacatccaagggggagtgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcat 111  Q
    ||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  23427462 gatggacatccaagggggagtgttataaatattaatatttgatgtccaaatagcaaatgtgttagtggaccatactactaggtt-ttgggcttagttcat 23427560  T
Q  112 aagctactctattttcttataaatagagctcatttgtaacattaagatacacacattagtgaataagaata 182  Q
    |||||||||||||| | ||||||||||||||||||||||||||  |||||||||  |||| ||||||||||    
T  23427561 aagctactctatttccctataaatagagctcatttgtaacatt--gatacacac--tagttaataagaata 23427627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 33 - 206
Target Start/End: Complemental strand, 33661052 - 33660877
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||||||||| || |||||||||||  |||  ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33661052 tgttataaatattaatagtggatgtccaaatagcaaataggtttatgggccatattactaggttattgggcttagttcataagctactctattttcttat 33660953  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaatactactcc-tattctctattcttctc 206  Q
    |||||||| |||||||||||||| ||||||||||||  ||||||||||||| | |||| |||||||| ||||||||    
T  33660952 aaatagagttcatttgtaacattgagatacacacatcggtgaataagaatatttctccttattctctcttcttctc 33660877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 33 - 182
Target Start/End: Original strand, 23421636 - 23421781
Alignment:
Q  33 tgttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttat 131  Q
    ||||||||||||||||| | ||| || ||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||| |||||||||| | |||    
T  23421636 tgttataaatattaatatttgatgtccaaatagcaaatgtgttagtggactatactactaggtt-ttgggcttagttcataagttactctatttccctat 23421734  T
Q  132 aaatagagctcatttgtaacattaagatacacacattagtgaataagaata 182  Q
    |||||||||||||||||||||||  |||||||||  |||| ||||||||||    
T  23421735 aaatagagctcatttgtaacatt--gatacacac--tagttaataagaata 23421781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 14855914 - 14855989
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccata 85  Q
    |||||||||||||||||||||||||||| |||||||  ||||||| | || ||||||| || ||||||||| ||||    
T  14855914 gagatggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcata 14855989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 19441345 - 19441313
Alignment:
Q  14 atggacatccaagggggagtgttataaatatta 46  Q
    ||||||||||||||||||||||||| |||||||    
T  19441345 atggacatccaagggggagtgttatgaatatta 19441313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 215
Target Start/End: Complemental strand, 6435 - 6256
Alignment:
Q  35 ttataaatattaatagtggatatc-aaatagcaaatgtgttattggaccatactactaggttattgggcttagttcataagctactctattttcttataa 133  Q
    ||||||||||||| ||||||| || |||||||||||   ||  ||| | |||| | |||||||||||||||||||||||||||||||||||| | | |||    
T  6435 ttataaatattaacagtggatgtccaaatagcaaataaatttatgggctatacgaataggttattgggcttagttcataagctactctatttccctgtaa 6336  T
Q  134 atagagctcatttgtaacattaagatacacacattagtgaataagaatactactcctattctctattcttctccttctctct 215  Q
    ||||| |||| |||||||| |  ||   |  ||| |||||||||||||| | |||||||||||| |||||||||||||||||    
T  6335 atagaactcaattgtaacagt--gagtgatgcatcagtgaataagaatattgctcctattctctcttcttctccttctctct 6256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 345853 - 345761
Alignment:
Q  11 gagatggacatccaagggggagtgttataaatattaatagtggatat-caaatagcaaatgtgttattggaccatactactaggttattgggc 102  Q
    |||||||||||||||||||||||||||| |||||||  ||||||| | || ||||||| || ||||||||| |||| |  ||| |||||||||    
T  345853 gagatggacatccaagggggagtgttatgaatattacaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggc 345761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University