View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_high_11 (Length: 432)
Name: NF1243_high_11
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 79 - 424
Target Start/End: Original strand, 52722657 - 52723002
Alignment:
| Q |
79 |
ctcagcttaatgtataatcgaaattacataactaaagtgtgatgttaattaatttaatcttggctatgagaataagattggagcaaattaattttgcagg |
178 |
Q |
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| T |
52722657 |
ctcagcttaatgtataatcgaaattgcataactaaagtgtgatgttaattaatttaatcttggctatgagaataagattggagcaaattaattttgcagg |
52722756 |
T |
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| Q |
179 |
ttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgacacaagtcaaagaattcaaatcattcgtta |
278 |
Q |
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| T |
52722757 |
ttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgacacaagtcgaagaattcaaatcattcgtta |
52722856 |
T |
|
| Q |
279 |
aaatccttccagtatcggcctctaccattgctcttgctatttctttcgctcaagtgtcaaccttctttcttagtcaagccagcatcatgaatagaaaact |
378 |
Q |
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| T |
52722857 |
aaatccttccagtatcggcctctaccattgctcttgctatttctttcgctcaagtgtcaaccttctttcttagtcaagccagcatcatgaatagaaaact |
52722956 |
T |
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| Q |
379 |
aggaaacatgttcgaaatcccaacaggttctgcccctgtctctgct |
424 |
Q |
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| T |
52722957 |
aggaaacaagttcgaaatcccaacaggttctgtccctgtctttgct |
52723002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 30 - 419
Target Start/End: Original strand, 52713588 - 52713975
Alignment:
| Q |
30 |
gttagatggtctaattttcatatttgttgactttgtttagtctgataaactcagcttaatgtataatcgaaattacataactaaagtgtgatgttaatta |
129 |
Q |
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| T |
52713588 |
gttagatgatctagttttcatatttgttgacttt--ttagtgttataaactaagcttattttatgatcgaaatcacataactaa-gcgtgatgttgatta |
52713684 |
T |
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| Q |
130 |
atttaatcttggc-tatgagaataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacag |
228 |
Q |
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| T |
52713685 |
atttaatcttggtatatgagaataagatcggagcaaattaattttgcagattttttgacaaagcagcagttattacagaaaaggacacactcagcaacag |
52713784 |
T |
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| Q |
229 |
atggagtgtatgcacagtgacacaagtcaaagaattcaaatcattcgttaaaatccttccagtatcggcctctaccattgctcttgctatttctttcgct |
328 |
Q |
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| T |
52713785 |
atggagtgtatgcacagtgacacaagtggaagagttcaaatcattcattaaaatccttccagtgtgggcatctaccattgctcttgctatttctttcgct |
52713884 |
T |
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| Q |
329 |
caagtgtcaaccttctttcttagtcaagccagcatcatgaatagaaaactaggaaacatgttcgaaatcccaacaggttctgcccctgtct |
419 |
Q |
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| T |
52713885 |
caaatgtcaaccttctttttaagtcaagccagcatcatgaatagaaaactaggaaacaacttcgaaatcccgacaggttctgtccccgtct |
52713975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 150 - 369
Target Start/End: Original strand, 52699432 - 52699651
Alignment:
| Q |
150 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgac |
249 |
Q |
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| T |
52699432 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgac |
52699531 |
T |
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| Q |
250 |
acaagtcaaagaattcaaatcattcgttaaaatccttccagtatcggcctctaccattgctcttgctatttctttcgctcaagtgtcaaccttctttctt |
349 |
Q |
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| T |
52699532 |
acaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctaccattgctatttctatctctttggctcaaatgtcaacctggtttcta |
52699631 |
T |
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| Q |
350 |
agtcaagccagcatcatgaa |
369 |
Q |
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| T |
52699632 |
agtcaagccaaaatcatgaa |
52699651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 52722276 - 52722331
Alignment:
| Q |
31 |
ttagatggtctaattttcatatttgttgactttgtttagtctgataaactcagctt |
86 |
Q |
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| T |
52722276 |
ttagatggtctaattttcatatttgttgactttgtttagtctgataaactcagctt |
52722331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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