View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1243_high_15 (Length: 386)

Name: NF1243_high_15
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1243_high_15
NF1243_high_15
[»] chr7 (2 HSPs)
chr7 (42-363)||(2754137-2754456)
chr7 (176-205)||(6969096-6969125)
[»] chr6 (4 HSPs)
chr6 (42-363)||(15357091-15357410)
chr6 (165-262)||(28704564-28704661)
chr6 (42-86)||(8419683-8419727)
chr6 (42-86)||(28705099-28705143)
[»] scaffold0576 (1 HSPs)
scaffold0576 (42-363)||(2080-2399)
[»] chr8 (1 HSPs)
chr8 (42-363)||(3731638-3731957)
[»] chr1 (1 HSPs)
chr1 (42-363)||(20262028-20262348)
[»] chr2 (2 HSPs)
chr2 (42-363)||(28655860-28656179)
chr2 (42-86)||(25815453-25815497)
[»] chr5 (1 HSPs)
chr5 (175-216)||(28735822-28735863)
[»] chr4 (2 HSPs)
chr4 (175-205)||(51238020-51238050)
chr4 (175-216)||(7422171-7422212)
[»] chr3 (2 HSPs)
chr3 (175-208)||(13564514-13564547)
chr3 (175-208)||(27282238-27282271)


Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 42 - 363
Target Start/End: Complemental strand, 2754456 - 2754137
Alignment:
Q  42 agtgtgttggtgctatatagattttggtgagagaattgaattttttagaatgagttgttttcaatttgatgctgtatctatattagagtaatttaatgta 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  2754456 agtgtgttggtgctatatagattttggtgagagaattgaattttttagaatgagttgttttcaatttgatgatgtatgtatattagagtaatttaatgta 2754357  T
Q  142 aatagaattatattannnnnnnngtttataggaaataatttaagaaaatggaagtgattgaatgcaattatatgtttcaatgttgtgtttgcaaggtctg 241  Q
    |||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2754356 aatagaattatattattttttttgtttataggaaataatttaagaaaatggaagtgattgaatgcaattatatgtttcaatgttgtgtttgcaaggtctg 2754257  T
Q  242 ttcttgccttgtgtttacgtgcagttggggtttgtatatgttgaagttctcgccttgtatgtgtatgaatggagatggttcccatgtgtgattgtttgtt 341  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  2754256 ttcttgccttgtgtttacgtgcagttggggtttgtataggttgaagttctcgccttgtatgtgtatgaatggagatggttccca--tgtgattgtttgtt 2754159  T
Q  342 gagtggagtgtcttagcctatg 363  Q
    |||||| |||||||||||||||    
T  2754158 gagtggcgtgtcttagcctatg 2754137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 6969125 - 6969096
Alignment:
Q  176 ataatttaagaaaatggaagtgattgaatg 205  Q
    ||||||||||||||||||||||||||||||    
T  6969125 ataatttaagaaaatggaagtgattgaatg 6969096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 42 - 363
Target Start/End: Original strand, 15357091 - 15357410
Alignment:
Q  42 agtgtgttggtgctatatagattttggtgagagaattgaattttttagaatgagttgttttcaatttgatgctgtatctatattagagtaatttaatgta 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  15357091 agtgtgttggtgctatatagattttggtgagagaattgaattttttagaatgagttgttttcaatttgatgatgtatgtatattagagtaatttaatgta 15357190  T
Q  142 aatagaattatattannnnnnnngtttataggaaataatttaagaaaatggaagtgattgaatgcaattatatgtttcaatgttgtgtttgcaaggtctg 241  Q
    |||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15357191 aatagaattatattattttttttgtttataggaaataatttaagaaaatggaagtgattgaatgcaattatatgtttcaatgttgtgtttgcaaggtctg 15357290  T
Q  242 ttcttgccttgtgtttacgtgcagttggggtttgtatatgttgaagttctcgccttgtatgtgtatgaatggagatggttcccatgtgtgattgtttgtt 341  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  15357291 ttcttgccttgtgtttacgtgcagttggggtttgtataggttgaagttctcgccttgtatgtgtatgaatggagatggttccca--tgtgattgtttgtt 15357388  T
Q  342 gagtggagtgtcttagcctatg 363  Q
    |||||| |||||||||||||||    
T  15357389 gagtggcgtgtcttagcctatg 15357410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 165 - 262
Target Start/End: Complemental strand, 28704661 - 28704564
Alignment:
Q  165 gtttataggaaataatttaagaaaatggaagtgattgaatgcaattatatgtttcaatgttgtgtttgcaaggtctgttcttgccttgtgtttacgtg 262  Q
    |||||||||||||| |||||||||||| ||  || |||||||||||||||||||||| |||||||||||| ||  |||||||||||||||||| ||||    
T  28704661 gtttataggaaatattttaagaaaatgaaatcgaatgaatgcaattatatgtttcaaagttgtgtttgcatggaatgttcttgccttgtgtttgcgtg 28704564  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 8419683 - 8419727
Alignment:
Q  42 agtgtgttggtgctatatagattttggtgagagaattgaattttt 86  Q
    ||||||| |||||||||||| ||||||||||| ||||||| ||||    
T  8419683 agtgtgtcggtgctatatagcttttggtgagataattgaaatttt 8419727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 28705143 - 28705099
Alignment:
Q  42 agtgtgttggtgctatatagattttggtgagagaattgaattttt 86  Q
    |||||||||||||||||||| ||||||| | | ||||||||||||    
T  28705143 agtgtgttggtgctatatagcttttggtcacataattgaattttt 28705099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 42 - 363
Target Start/End: Original strand, 2080 - 2399
Alignment:
Q  42 agtgtgttggtgctatatagattttggtgagagaattgaattttttagaatgagttgttttcaatttgatgctgtatctatattagagtaatttaatgta 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  2080 agtgtgttggtgctatatagattttggtgagagaattgaattttttagaatgagttgttttcaatttgatgatgtatgtatattagagtaatttaatgta 2179  T
Q  142 aatagaattatattannnnnnnngtttataggaaataatttaagaaaatggaagtgattgaatgcaattatatgtttcaatgttgtgtttgcaaggtctg 241  Q
    |||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2180 aatagaattatattattttttttgtttataggaaataatttaagaaaatggaagtgattgaatgcaattatatgtttcaatgttgtgtttgcaaggtctg 2279  T
Q  242 ttcttgccttgtgtttacgtgcagttggggtttgtatatgttgaagttctcgccttgtatgtgtatgaatggagatggttcccatgtgtgattgtttgtt 341  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  2280 ttcttgccttgtgtttacgtgcggttggggtttgtataggttgaagttctcgccttgtatgtgtatgaatggagatggttccca--tgtgattgtttgtt 2377  T
Q  342 gagtggagtgtcttagcctatg 363  Q
    |||||| |||||||||||||||    
T  2378 gagtggcgtgtcttagcctatg 2399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 42 - 363
Target Start/End: Original strand, 3731638 - 3731957
Alignment:
Q  42 agtgtgttggtgctatatagattttggtgagagaattgaattttttagaatgagttgttttcaatttgatgctgtatctatattagagtaatttaatgta 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  3731638 agtgtgttggtgctatatagattttggtgagagaattgaattttttagaatgagttgttttcaatttgatgttgtatgtatattagagtaatttaatgta 3731737  T
Q  142 aatagaattatattannnnnnnngtttataggaaataatttaagaaaatggaagtgattgaatgcaattatatgtttcaatgttgtgtttgcaaggtctg 241  Q
    ||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3731738 aatagaattatatttttttttttgtttataggaaataatttaagaaaatggaagtgattgaatgcaattatatgtttcaatgttgtgtttgcaaggtctg 3731837  T
Q  242 ttcttgccttgtgtttacgtgcagttggggtttgtatatgttgaagttctcgccttgtatgtgtatgaatggagatggttcccatgtgtgattgtttgtt 341  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  3731838 ttcttgccttgtgtttacgtgctgttggggtttgtataggttgaagttctcgccttgtatgtgtatgaatggagatggttccca--tgtgattgtttgtt 3731935  T
Q  342 gagtggagtgtcttagcctatg 363  Q
    |||||| |||||||||||||||    
T  3731936 gagtggcgtgtcttagcctatg 3731957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 42 - 363
Target Start/End: Original strand, 20262028 - 20262348
Alignment:
Q  42 agtgtgttggtgctatatagattttggtgagagaattgaatttttt-agaatgagttgttttcaatttgatgctgtatctatattagagtaatttaatgt 140  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  20262028 agtgtgttggtgctatatagattttggtgagagatttgaatttttttagaatgagttgttttcaatttgatgttgtatgtatattagagtaatttaatgt 20262127  T
Q  141 aaatagaattatattannnnnnnngtttataggaaataatttaagaaaatggaagtgattgaatgcaattatatgtttcaatgttgtgtttgcaaggtct 240  Q
    ||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20262128 aaatagaattatatatatttttttgtttataggaaataatttaagaaaatggaagtgattgaatgcaattatatgtttcaatgttgtggttgcaaggtct 20262227  T
Q  241 gttcttgccttgtgtttacgtgcagttggggtttgtatatgttgaagttctcgccttgtatgtgtatgaatggagatggttcccatgtgtgattgtttgt 340  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||    
T  20262228 gttcttgccttgtgtttacgtgcagttggggtttgtataggttgaagttctcgccttgtatgtgtatgaatggagatggttccca--tgtgattttttgt 20262325  T
Q  341 tgagtggagtgtcttagcctatg 363  Q
    ||||||| |||||||||||||||    
T  20262326 tgagtggcgtgtcttagcctatg 20262348  T

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Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 42 - 363
Target Start/End: Original strand, 28655860 - 28656179
Alignment:
Q  42 agtgtgttggtgctatatagattttggtgagagaattgaatttttt-agaatgagttgttttcaatttgatgctgtatctatattagagtaatttaatgt 140  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  28655860 agtgtgttggtgctatatagattttggtgagagatttgaatttttttagaatgagttgttttcaatttgatgttgtatgtatattagagtaatttaatgt 28655959  T
Q  141 aaatagaattatattannnnnnnngtttataggaaataatttaagaaaatggaagtgattgaatgcaattatatgtttcaatgttgtgtttgcaaggtct 240  Q
    ||||||||||||||          ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  28655960 aaatagaattatatatatttttttgtttataggaaataatttaagaaaatggaagtgattgaatg-aattatatgtttcaatgttgtggttgcaaggtct 28656058  T
Q  241 gttcttgccttgtgtttacgtgcagttggggtttgtatatgttgaagttctcgccttgtatgtgtatgaatggagatggttcccatgtgtgattgtttgt 340  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||    
T  28656059 gttcttgccttgtgtttacgtgcagttggggtttgtataggttgaagttctcgccttgtatgtgtatgaatggagatggttccca--tgtgattttttgt 28656156  T
Q  341 tgagtggagtgtcttagcctatg 363  Q
    |||||||  ||||||||||||||    
T  28656157 tgagtggcatgtcttagcctatg 28656179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 25815453 - 25815497
Alignment:
Q  42 agtgtgttggtgctatatagattttggtgagagaattgaattttt 86  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||    
T  25815453 agtgtgttggtgctatatagcttttgttcagagaattgaattttt 25815497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 28735863 - 28735822
Alignment:
Q  175 aataatttaagaaaatggaagtgattgaatgcaattatatgt 216  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  28735863 aataatttaagaaaatagaagtgattgaatgtaattatatgt 28735822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 205
Target Start/End: Complemental strand, 51238050 - 51238020
Alignment:
Q  175 aataatttaagaaaatggaagtgattgaatg 205  Q
    |||||||||||||||||||||||||||||||    
T  51238050 aataatttaagaaaatggaagtgattgaatg 51238020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 7422171 - 7422212
Alignment:
Q  175 aataatttaagaaaatggaagtgattgaatgcaattatatgt 216  Q
    |||||||| ||||||| |||||||||||||| ||||||||||    
T  7422171 aataatttgagaaaatagaagtgattgaatgtaattatatgt 7422212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 13564514 - 13564547
Alignment:
Q  175 aataatttaagaaaatggaagtgattgaatgcaa 208  Q
    |||||||| |||||||||||||||||||||||||    
T  13564514 aataatttgagaaaatggaagtgattgaatgcaa 13564547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 27282271 - 27282238
Alignment:
Q  175 aataatttaagaaaatggaagtgattgaatgcaa 208  Q
    ||||||||||||||||||| ||||||||||||||    
T  27282271 aataatttaagaaaatggaggtgattgaatgcaa 27282238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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