View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1243_high_18 (Length: 379)
Name: NF1243_high_18
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_high_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 35 - 343
Target Start/End: Complemental strand, 4961041 - 4960735
Alignment:
| Q |
35 |
ctgaaatttggagtgaacaacaatggaaatttaaattttagggtttctactacgtttatttgcatgagatcttggagaaaatccaaatttaagttttagg |
134 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4961041 |
ctgaaatttggagcgaacaacaatggaaatttaaattttagggtttcttctacgtttatttgcatgagatcttggagaaaatccaaatttgagttttagg |
4960942 |
T |
|
| Q |
135 |
gtttcttctgcgtttcaaacagtttaactacctatttttgagtttatttatccgagagtcaagttggtgtggtggataagatttgctggatatttaattt |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4960941 |
gtttcttctgcgtttcaaacagtttaactacctatttttgagtttatttatccgagagtcaagttg--gtggtggataagatttgctggatatttaattt |
4960844 |
T |
|
| Q |
235 |
ctaaaggttgcagtgtagcacttagaacaagaaaaaactttggatttcaattgaataaaatgtgttaccccaaaacccttctttcccttaaaaaacacgc |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4960843 |
ctaaaggttgcagtgtagcacttagaacaagaaaaaactttggatttcaattgaataaaatgtgttaccccaaaacccttctttcccttaaaaaacacgt |
4960744 |
T |
|
| Q |
335 |
tgtatcaca |
343 |
Q |
| |
|
||||||||| |
|
|
| T |
4960743 |
tgtatcaca |
4960735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University