View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1243_high_20 (Length: 378)
Name: NF1243_high_20
Description: NF1243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1243_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 28 - 349
Target Start/End: Original strand, 42874074 - 42874393
Alignment:
| Q |
28 |
caccacagacctttaactttaatcatatatcatataaagtcaagcataaagttgattttcatttgtattttgttgacaatatatcaaaagtaagctcata |
127 |
Q |
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| T |
42874074 |
caccacaaacctttaactttaatcatatatcatataaagtcaagcataaagttgattttcatttgtattttgttgacaatatatcaaaagtaagctcata |
42874173 |
T |
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| Q |
128 |
gaccactcacaaatacttagttg--aacccacccttacgtggtactcctccatgtatgatgagccagcnnnnnnnnnnnnnnnnnnnnncaattcttcta |
225 |
Q |
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| T |
42874174 |
gaccactcacaaatacttagttgaaaacccacccttacgtggtactcctccatgtatgatgagccagc----tttttgattttttttttcaattcttcta |
42874269 |
T |
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| Q |
226 |
taaatttcaacattgtattgaaaaccttaattagagaatgaatgaacacttttccaaaagtatttgattttcattgaaaatcataaatgattatctatga |
325 |
Q |
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| T |
42874270 |
taaatttcaacattgtattgaaaaccttaattagagaatgaatgaacacttttccaaaagtatttgattttcatttaaaatcataaatgattatctatga |
42874369 |
T |
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| Q |
326 |
agcacatacacaacacgtagatcg |
349 |
Q |
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| T |
42874370 |
agcacatacacaacaggtagatcg |
42874393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 42874443 - 42874496
Alignment:
| Q |
296 |
tcattgaaaatcataaatgattatctatgaagcacatacacaacacgtagatcg |
349 |
Q |
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| T |
42874443 |
tcattgaaaatcataaatgattatctatgaagcacatacacaacacgtagatcg |
42874496 |
T |
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